Mutagenetix > Incidental Mutation

Incidental Mutation 'R7145:Tmf1'

553708

Institutional Source

Beutler Lab

Gene Symbol

Tmf1

Ensembl Gene

ENSMUSG00000030059

Gene Name

TATA element modulatory factor 1

Synonyms

LOC232286, 7030402D04Rik

MMRRC Submission

045223-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.218) question?

Stock #

R7145 (G1)

Quality Score

225.009

Status

Not validated

Chromosome

Chromosomal Location

97129958-97156083 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 97153079 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glutamic Acid at position 331 (D331E)

Ref Sequence

ENSEMBL: ENSMUSP00000093325 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000095664] [ENSMUST00000124173]

AlphaFold

B9EKI3

Predicted Effect

probably damaging
Transcript: ENSMUST00000095664
AA Change: D331E

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000093325
Gene: ENSMUSG00000030059
AA Change: D331E

Domain	Start	End	E-Value	Type
low complexity region	111	122	N/A	INTRINSIC
low complexity region	131	142	N/A	INTRINSIC
low complexity region	194	211	N/A	INTRINSIC
low complexity region	235	253	N/A	INTRINSIC
low complexity region	261	276	N/A	INTRINSIC
low complexity region	367	381	N/A	INTRINSIC
low complexity region	410	426	N/A	INTRINSIC
coiled coil region	443	536	N/A	INTRINSIC
Pfam:TMF_DNA_bd	540	613	5e-24	PFAM
low complexity region	697	715	N/A	INTRINSIC
low complexity region	719	732	N/A	INTRINSIC
low complexity region	803	821	N/A	INTRINSIC
coiled coil region	823	894	N/A	INTRINSIC
low complexity region	923	937	N/A	INTRINSIC
Pfam:TMF_TATA_bd	972	1085	1.5e-35	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000124173
AA Change: D331E

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000120093
Gene: ENSMUSG00000030059
AA Change: D331E

Domain	Start	End	E-Value	Type
low complexity region	111	122	N/A	INTRINSIC
low complexity region	131	142	N/A	INTRINSIC
low complexity region	194	211	N/A	INTRINSIC
low complexity region	235	253	N/A	INTRINSIC
low complexity region	261	276	N/A	INTRINSIC
low complexity region	367	381	N/A	INTRINSIC
low complexity region	410	426	N/A	INTRINSIC
coiled coil region	443	536	N/A	INTRINSIC
Pfam:TMF_DNA_bd	540	613	1.4e-24	PFAM
low complexity region	697	715	N/A	INTRINSIC
low complexity region	719	732	N/A	INTRINSIC

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 99.2%

Validation Efficiency

MGI Phenotype

PHENOTYPE: Mice homozygous for a knock-out allele exhibit male infertility associated with decreased testis weight, globozoospermia, absent acrosome, asthenozoospermia, and abnormal sperm midpiece morphology. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 71 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1110002E22Rik	T	C	3: 137,775,820 (GRCm39)	Y1670H	probably damaging	Het
Abca12	T	C	1: 71,346,212 (GRCm39)	K886R	possibly damaging	Het
Adcy3	G	A	12: 4,250,992 (GRCm39)	E584K	probably benign	Het
Ano3	A	T	2: 110,693,205 (GRCm39)	V131D	probably benign	Het
Arhgdig	C	T	17: 26,418,337 (GRCm39)	W215*	probably null	Het
Cad	G	T	5: 31,224,956 (GRCm39)	W953L	possibly damaging	Het
Calhm2	T	C	19: 47,124,080 (GRCm39)	Y88C	probably benign	Het
Cdk5rap2	A	T	4: 70,156,468 (GRCm39)	D1681E	probably benign	Het
Cenpl	T	A	1: 160,910,482 (GRCm39)	L143H	possibly damaging	Het
Cherp	T	C	8: 73,222,230 (GRCm39)	K270E		Het
Cmss1	A	G	16: 57,131,718 (GRCm39)	I136T	probably benign	Het
Col23a1	T	C	11: 51,456,050 (GRCm39)		probably null	Het
Crnn	C	A	3: 93,055,689 (GRCm39)	D158E	probably damaging	Het
Dnmt3a	A	T	12: 3,922,844 (GRCm39)	Q149L	probably benign	Het
Dst	T	A	1: 34,228,963 (GRCm39)	N2185K	probably benign	Het
Eif1ad18	G	T	12: 88,050,597 (GRCm39)	C44F	probably benign	Het
Elp2	T	A	18: 24,737,126 (GRCm39)	N25K	probably benign	Het
Ephb4	A	T	5: 137,370,308 (GRCm39)	D845V	probably damaging	Het
Esyt3	T	C	9: 99,201,627 (GRCm39)	T561A	probably damaging	Het
F3	G	T	3: 121,525,235 (GRCm39)	V159L	probably damaging	Het
Fam81a	A	T	9: 70,017,560 (GRCm39)	D128E	probably damaging	Het
Flot1	T	G	17: 36,135,835 (GRCm39)	H155Q	probably benign	Het
Fut9	T	A	4: 25,620,507 (GRCm39)	K102N	probably damaging	Het
Gm6309	T	C	5: 146,107,100 (GRCm39)	Q82R	possibly damaging	Het
H13	A	G	2: 152,522,992 (GRCm39)	N102D	probably damaging	Het
Lamc2	C	G	1: 153,006,518 (GRCm39)	A878P	possibly damaging	Het
Lepr	C	T	4: 101,609,394 (GRCm39)	T327I	probably benign	Het
Lrp2	A	G	2: 69,285,152 (GRCm39)		probably null	Het
Ly86	A	G	13: 37,560,986 (GRCm39)	K116E	probably damaging	Het
Mapk8ip2	T	A	15: 89,343,201 (GRCm39)	F648I	possibly damaging	Het
Muc16	G	A	9: 18,566,876 (GRCm39)	T1881I	unknown	Het
Myh13	T	G	11: 67,245,566 (GRCm39)	S1069A	probably benign	Het
Myh4	T	A	11: 67,151,054 (GRCm39)	I1903N	possibly damaging	Het
Myo18b	A	T	5: 112,965,545 (GRCm39)	L1341*	probably null	Het
Naa25	G	T	5: 121,555,552 (GRCm39)		probably null	Het
Nbeal1	G	C	1: 60,276,310 (GRCm39)	V684L	probably benign	Het
Ncapg	C	T	5: 45,827,372 (GRCm39)	A3V	possibly damaging	Het
Ncln	T	C	10: 81,324,086 (GRCm39)	H481R	probably benign	Het
Nek4	C	A	14: 30,704,305 (GRCm39)	Q607K	probably damaging	Het
Neo1	T	C	9: 58,796,462 (GRCm39)	Y1182C	probably damaging	Het
Npnt	T	C	3: 132,615,692 (GRCm39)	N165S	probably benign	Het
Or2l5	C	G	16: 19,333,649 (GRCm39)	V246L	probably damaging	Het
Or4p22	C	T	2: 88,317,721 (GRCm39)	S215L	probably damaging	Het
Or8b8	A	G	9: 37,808,859 (GRCm39)	H53R	probably benign	Het
Or8k30	T	C	2: 86,338,872 (GRCm39)	L23P	probably damaging	Het
Otulin	T	C	15: 27,608,856 (GRCm39)	Y229C	probably damaging	Het
Palld	A	T	8: 61,985,051 (GRCm39)	D1071E	unknown	Het
Pcdhb20	T	C	18: 37,638,142 (GRCm39)	S223P	probably damaging	Het
Pcdhga6	T	A	18: 37,840,781 (GRCm39)	I167N	probably damaging	Het
Pcdhgb4	A	G	18: 37,854,843 (GRCm39)	N413D	probably benign	Het
Pcdhgb8	T	A	18: 37,896,050 (GRCm39)	Y373*	probably null	Het
Plxna2	G	T	1: 194,331,830 (GRCm39)	V419L	probably benign	Het
Rpgrip1l	A	T	8: 91,959,434 (GRCm39)		probably null	Het
Rsrc2	A	G	5: 123,877,630 (GRCm39)		probably benign	Het
Scaper	C	T	9: 55,819,395 (GRCm39)	D107N	unknown	Het
Scgb2b3	T	A	7: 31,059,573 (GRCm39)	Y67F	probably benign	Het
Scn5a	G	A	9: 119,315,437 (GRCm39)	T1757I	probably damaging	Het
Sgo2b	G	A	8: 64,381,218 (GRCm39)	P538L	probably damaging	Het
Slc9a3	A	G	13: 74,298,797 (GRCm39)	K72R	probably damaging	Het
Smchd1	T	A	17: 71,685,202 (GRCm39)	T1409S	probably benign	Het
Stab1	A	T	14: 30,867,030 (GRCm39)		probably null	Het
Sult2b1	T	C	7: 45,383,056 (GRCm39)	E242G	probably damaging	Het
Tcaf1	A	T	6: 42,663,687 (GRCm39)	H64Q	probably damaging	Het
Tle6	T	C	10: 81,435,910 (GRCm39)	T2A	possibly damaging	Het
Tmem115	T	C	9: 107,412,285 (GRCm39)	V203A	probably benign	Het
Tmem45b	G	A	9: 31,340,337 (GRCm39)	T108I	probably damaging	Het
Txndc9	T	C	1: 38,029,377 (GRCm39)	Y157C	probably damaging	Het
Vmn2r111	T	C	17: 22,778,032 (GRCm39)	N549S	possibly damaging	Het
Vmn2r27	C	A	6: 124,168,711 (GRCm39)	R806S	probably benign	Het
Vmn2r59	G	A	7: 41,695,188 (GRCm39)	A408V	probably damaging	Het
Ythdc1	T	C	5: 86,964,467 (GRCm39)	V92A	probably benign	Het

Other mutations in Tmf1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00661:Tmf1	APN	6	97,153,455 (GRCm39)	missense	probably benign	0.00
IGL00846:Tmf1	APN	6	97,150,277 (GRCm39)	missense	possibly damaging	0.88
IGL01575:Tmf1	APN	6	97,152,897 (GRCm39)	missense	probably damaging	1.00
IGL01922:Tmf1	APN	6	97,153,891 (GRCm39)	missense	probably benign	0.00
IGL02550:Tmf1	APN	6	97,135,522 (GRCm39)	missense	probably benign	0.28
IGL02675:Tmf1	APN	6	97,141,003 (GRCm39)	splice site	probably benign
IGL02985:Tmf1	APN	6	97,153,770 (GRCm39)	missense	probably damaging	1.00
IGL03324:Tmf1	APN	6	97,140,614 (GRCm39)	missense	probably damaging	0.99
caddy	UTSW	6	97,138,408 (GRCm39)	nonsense	probably null
R0028:Tmf1	UTSW	6	97,135,059 (GRCm39)	missense	probably damaging	1.00
R0153:Tmf1	UTSW	6	97,147,345 (GRCm39)	missense	probably damaging	0.97
R0325:Tmf1	UTSW	6	97,153,465 (GRCm39)	missense	possibly damaging	0.51
R0420:Tmf1	UTSW	6	97,153,102 (GRCm39)	missense	probably damaging	1.00
R0730:Tmf1	UTSW	6	97,153,453 (GRCm39)	missense	probably benign
R0825:Tmf1	UTSW	6	97,152,956 (GRCm39)	missense	probably benign
R0827:Tmf1	UTSW	6	97,135,011 (GRCm39)	nonsense	probably null
R0839:Tmf1	UTSW	6	97,153,284 (GRCm39)	missense	probably damaging	1.00
R1078:Tmf1	UTSW	6	97,150,261 (GRCm39)	missense	probably damaging	1.00
R1905:Tmf1	UTSW	6	97,138,440 (GRCm39)	missense	possibly damaging	0.53
R2274:Tmf1	UTSW	6	97,140,547 (GRCm39)	missense	probably damaging	1.00
R3701:Tmf1	UTSW	6	97,149,292 (GRCm39)	missense	possibly damaging	0.51
R3953:Tmf1	UTSW	6	97,153,167 (GRCm39)	missense	probably damaging	0.99
R3955:Tmf1	UTSW	6	97,153,167 (GRCm39)	missense	probably damaging	0.99
R4398:Tmf1	UTSW	6	97,155,857 (GRCm39)	missense	probably damaging	0.99
R4416:Tmf1	UTSW	6	97,155,949 (GRCm39)	missense	probably damaging	1.00
R4497:Tmf1	UTSW	6	97,149,293 (GRCm39)	missense	probably benign	0.00
R4592:Tmf1	UTSW	6	97,150,361 (GRCm39)	missense	probably benign	0.00
R4669:Tmf1	UTSW	6	97,147,388 (GRCm39)	missense	probably benign	0.00
R5214:Tmf1	UTSW	6	97,144,253 (GRCm39)	missense	possibly damaging	0.81
R5352:Tmf1	UTSW	6	97,153,770 (GRCm39)	missense	probably damaging	1.00
R5530:Tmf1	UTSW	6	97,135,048 (GRCm39)	missense	probably damaging	1.00
R5815:Tmf1	UTSW	6	97,150,364 (GRCm39)	missense	probably benign	0.28
R6806:Tmf1	UTSW	6	97,138,408 (GRCm39)	nonsense	probably null
R6837:Tmf1	UTSW	6	97,153,542 (GRCm39)	missense	possibly damaging	0.76
R6853:Tmf1	UTSW	6	97,145,810 (GRCm39)	missense	probably damaging	0.99
R6887:Tmf1	UTSW	6	97,153,799 (GRCm39)	missense	probably damaging	1.00
R7058:Tmf1	UTSW	6	97,133,911 (GRCm39)	missense	probably damaging	1.00
R7340:Tmf1	UTSW	6	97,145,061 (GRCm39)	missense	possibly damaging	0.81
R7573:Tmf1	UTSW	6	97,135,455 (GRCm39)	missense	probably benign	0.14
R7809:Tmf1	UTSW	6	97,138,420 (GRCm39)	missense	probably damaging	0.99
R7833:Tmf1	UTSW	6	97,138,372 (GRCm39)	missense	probably benign	0.06
R8728:Tmf1	UTSW	6	97,133,821 (GRCm39)	missense	probably damaging	1.00
R9004:Tmf1	UTSW	6	97,152,738 (GRCm39)	missense	probably benign	0.14
R9425:Tmf1	UTSW	6	97,149,293 (GRCm39)	missense	probably benign	0.00
R9436:Tmf1	UTSW	6	97,153,617 (GRCm39)	missense	probably benign	0.05
R9454:Tmf1	UTSW	6	97,155,866 (GRCm39)	missense	probably benign	0.00
R9458:Tmf1	UTSW	6	97,153,382 (GRCm39)	missense	probably benign	0.00
R9490:Tmf1	UTSW	6	97,137,227 (GRCm39)	missense	probably benign	0.00
R9544:Tmf1	UTSW	6	97,147,293 (GRCm39)	missense	possibly damaging	0.92
R9558:Tmf1	UTSW	6	97,147,293 (GRCm39)	missense	possibly damaging	0.92
R9560:Tmf1	UTSW	6	97,147,293 (GRCm39)	missense	possibly damaging	0.92
R9595:Tmf1	UTSW	6	97,135,457 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- CAGTTCACTGGAGTAGCACTTCG -3'
(R):5'- AGTTCGAGGCAAGAGACTTCG -3'

Sequencing Primer
(F):5'- GAGTAGCACTTCGGCCACTTTC -3'
(R):5'- GGATGCAAAGTCGAGTCTTCACC -3'

Posted On

2019-05-15