Mutagenetix > Incidental Mutation

Incidental Mutation 'R6092:Far2'

485983

Institutional Source

Beutler Lab

Gene Symbol

Far2

Ensembl Gene

ENSMUSG00000030303

Gene Name

fatty acyl CoA reductase 2

Synonyms

Mlstd1

MMRRC Submission

044249-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R6092 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

147948914-148084256 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 148076581 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Phenylalanine to Leucine at position 475 (F475L)

Ref Sequence

ENSEMBL: ENSMUSP00000107234 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000032443] [ENSMUST00000111607] [ENSMUST00000136008]

AlphaFold

Q7TNT2

Predicted Effect

probably benign
Transcript: ENSMUST00000032443
AA Change: F475L

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)

SMART Domains

Protein: ENSMUSP00000032443
Gene: ENSMUSG00000030303
AA Change: F475L

Domain	Start	End	E-Value	Type
Pfam:Polysacc_synt_2	13	160	5.3e-8	PFAM
Pfam:Epimerase	13	242	7.5e-9	PFAM
Pfam:3Beta_HSD	14	167	3.4e-7	PFAM
Pfam:NAD_binding_4	15	285	3.3e-76	PFAM
Pfam:Sterile	356	448	4.3e-35	PFAM
transmembrane domain	465	484	N/A	INTRINSIC
transmembrane domain	491	510	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000111607
AA Change: F475L

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)

SMART Domains

Protein: ENSMUSP00000107234
Gene: ENSMUSG00000030303
AA Change: F475L

Domain	Start	End	E-Value	Type
Pfam:Polysacc_synt_2	13	159	2.9e-8	PFAM
Pfam:Epimerase	13	241	3.2e-10	PFAM
Pfam:3Beta_HSD	14	167	4.2e-7	PFAM
Pfam:NAD_binding_4	15	285	3.2e-73	PFAM
Pfam:Sterile	355	448	1.2e-29	PFAM
transmembrane domain	466	483	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000136008

SMART Domains

Protein: ENSMUSP00000120456
Gene: ENSMUSG00000030304

Domain	Start	End	E-Value	Type
Pfam:ERGIC_N	13	101	1.6e-26	PFAM
Pfam:COPIIcoated_ERV	157	333	4.8e-51	PFAM

Meta Mutation Damage Score

0.0611

Coding Region Coverage

1x: 99.9%
3x: 99.6%
10x: 98.0%
20x: 94.1%

Validation Efficiency

98% (61/62)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene belongs to the short chain dehydrogenase/reductase superfamily. It encodes a reductase enzyme involved in the first step of wax biosynthesis wherein fatty acids are converted to fatty alcohols. The encoded peroxisomal protein utilizes saturated fatty acids of 16 or 18 carbons as preferred substrates. Alternatively spliced transcript variants have been observed for this gene. Related pseudogenes have been identified on chromosomes 2, 14 and 22. [provided by RefSeq, Nov 2012]

Allele List at MGI

Other mutations in this stock

Total: 64 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1110002E22Rik	C	T	3: 137,774,701 (GRCm39)	P1297S	probably benign	Het
4930486L24Rik	C	T	13: 61,001,461 (GRCm39)	V89M	probably benign	Het
Abhd16a	T	C	17: 35,317,786 (GRCm39)		probably null	Het
Abtb1	A	C	6: 88,815,433 (GRCm39)	C264G	probably benign	Het
Ank3	G	A	10: 69,838,395 (GRCm39)	R1566K	possibly damaging	Het
Arid1a	C	T	4: 133,421,163 (GRCm39)	G881R	unknown	Het
Asb8	A	G	15: 98,034,123 (GRCm39)	V144A	possibly damaging	Het
Atm	A	C	9: 53,435,714 (GRCm39)	C199G	probably damaging	Het
Atxn1	C	A	13: 45,720,288 (GRCm39)	V536L	probably benign	Het
Baz1a	C	T	12: 54,955,868 (GRCm39)	V1074M	possibly damaging	Het
BC034090	T	A	1: 155,100,659 (GRCm39)	D535V	probably damaging	Het
Casp8ap2	C	A	4: 32,639,380 (GRCm39)	H145N	probably damaging	Het
Ccdc24	T	A	4: 117,729,645 (GRCm39)	K25*	probably null	Het
Ccdc91	A	G	6: 147,437,114 (GRCm39)	N100S	possibly damaging	Het
Cdh20	A	T	1: 110,026,036 (GRCm39)	Y424F	probably benign	Het
Clasp1	T	C	1: 118,438,028 (GRCm39)	S612P	probably damaging	Het
Cxcl14	T	C	13: 56,443,646 (GRCm39)	M55V	possibly damaging	Het
Dnah11	T	C	12: 117,892,191 (GRCm39)	T3661A	probably benign	Het
Dnah14	T	A	1: 181,449,398 (GRCm39)	D574E	probably benign	Het
Dnah6	C	T	6: 73,091,680 (GRCm39)	V2204M	possibly damaging	Het
Ercc4	A	T	16: 12,943,125 (GRCm39)	H178L	probably benign	Het
Ggt7	A	G	2: 155,359,959 (GRCm39)		probably null	Het
Gm4131	T	A	14: 62,718,364 (GRCm39)	T81S	possibly damaging	Het
Gprc6a	A	G	10: 51,491,173 (GRCm39)	S788P	probably damaging	Het
Hmgxb3	C	A	18: 61,270,672 (GRCm39)	G884V	possibly damaging	Het
Homer1	T	A	13: 93,502,945 (GRCm39)		probably benign	Het
Iars1	T	C	13: 49,861,897 (GRCm39)	S483P	probably damaging	Het
Kansl1l	C	G	1: 66,812,643 (GRCm39)	E457Q	probably damaging	Het
Krtap4-9	G	A	11: 99,676,481 (GRCm39)		probably benign	Het
Lepr	C	A	4: 101,649,220 (GRCm39)	P874T	probably damaging	Het
Mad2l2	T	A	4: 148,228,067 (GRCm39)	F100L	probably damaging	Het
Mavs	A	T	2: 131,087,518 (GRCm39)	R339*	probably null	Het
Mettl1	G	A	10: 126,877,843 (GRCm39)		probably benign	Het
Mfsd8	A	G	3: 40,774,031 (GRCm39)	V493A	possibly damaging	Het
Mtmr9	C	T	14: 63,779,901 (GRCm39)	V63M	possibly damaging	Het
Mto1	T	C	9: 78,368,131 (GRCm39)	I425T	possibly damaging	Het
Or2av9	A	T	11: 58,380,900 (GRCm39)	M227K	probably damaging	Het
Or5g29	A	G	2: 85,420,950 (GRCm39)	Y22C	probably benign	Het
Or8b36	ATTGCTGTTT	ATTGCTGTTTGCTGTTT	9: 37,937,836 (GRCm39)		probably null	Het
Pclo	C	T	5: 14,727,937 (GRCm39)		probably benign	Het
Phf2	T	C	13: 48,969,533 (GRCm39)	D608G	unknown	Het
Plch2	T	C	4: 155,068,829 (GRCm39)	T1266A	probably benign	Het
Prdm12	A	G	2: 31,533,889 (GRCm39)	N169D	probably damaging	Het
Rimbp3	A	G	16: 17,030,134 (GRCm39)	Y1186C	probably damaging	Het
Serpinb3d	T	C	1: 107,006,989 (GRCm39)	M240V	probably damaging	Het
Slc25a38	C	T	9: 119,945,658 (GRCm39)	R74C	probably damaging	Het
Slc25a39	A	T	11: 102,295,719 (GRCm39)	Y109*	probably null	Het
Slc26a8	T	C	17: 28,867,129 (GRCm39)	N564S	probably damaging	Het
Spag4	G	A	2: 155,907,696 (GRCm39)		probably benign	Het
Stx1b	A	G	7: 127,407,035 (GRCm39)	M74T	possibly damaging	Het
Tbc1d1	A	G	5: 64,507,242 (GRCm39)	D1153G	probably benign	Het
Tert	T	C	13: 73,776,700 (GRCm39)	F484L	probably benign	Het
Tet1	A	G	10: 62,649,494 (GRCm39)	V72A	probably benign	Het
Tnfrsf13c	T	C	15: 82,107,355 (GRCm39)	T147A	probably damaging	Het
Trpa1	A	T	1: 14,959,710 (GRCm39)	Y659N	probably damaging	Het
Trpm2	A	G	10: 77,761,516 (GRCm39)	F1045L	probably benign	Het
Ttc13	T	C	8: 125,405,772 (GRCm39)	H529R	probably benign	Het
Ttn	T	C	2: 76,545,614 (GRCm39)	T32570A	probably damaging	Het
Uba7	A	G	9: 107,860,359 (GRCm39)	T892A	possibly damaging	Het
Uty	A	T	Y: 1,174,836 (GRCm39)	M195K	probably benign	Het
Zfp109	A	G	7: 23,928,978 (GRCm39)	S152P	possibly damaging	Het
Zfp532	T	C	18: 65,777,281 (GRCm39)	V846A	probably damaging	Het
Zfp658	A	T	7: 43,223,951 (GRCm39)	H742L	possibly damaging	Het
Zfp831	C	A	2: 174,547,299 (GRCm39)	P1494Q	probably damaging	Het

Other mutations in Far2

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01131:Far2	APN	6	148,052,096 (GRCm39)	missense	possibly damaging	0.89
IGL01650:Far2	APN	6	148,074,985 (GRCm39)	missense	possibly damaging	0.92
IGL01899:Far2	APN	6	148,047,527 (GRCm39)	missense	probably benign	0.19
IGL02524:Far2	APN	6	148,052,156 (GRCm39)	missense	probably damaging	1.00
IGL02756:Far2	APN	6	148,058,889 (GRCm39)	missense	probably damaging	1.00
Galway	UTSW	6	148,058,980 (GRCm39)	missense	probably damaging	0.99
PIT4531001:Far2	UTSW	6	148,076,629 (GRCm39)	missense	possibly damaging	0.95
R0319:Far2	UTSW	6	148,058,968 (GRCm39)	missense	probably damaging	0.96
R0654:Far2	UTSW	6	148,076,639 (GRCm39)	missense	possibly damaging	0.64
R1321:Far2	UTSW	6	148,075,034 (GRCm39)	splice site	probably benign
R1610:Far2	UTSW	6	148,058,956 (GRCm39)	missense	possibly damaging	0.71
R2039:Far2	UTSW	6	148,067,075 (GRCm39)	missense	probably benign
R2471:Far2	UTSW	6	148,040,192 (GRCm39)	missense	probably damaging	1.00
R3874:Far2	UTSW	6	148,052,089 (GRCm39)	missense	probably benign	0.00
R3875:Far2	UTSW	6	148,052,089 (GRCm39)	missense	probably benign	0.00
R3974:Far2	UTSW	6	148,052,252 (GRCm39)	missense	probably damaging	0.96
R4490:Far2	UTSW	6	148,074,907 (GRCm39)	missense	possibly damaging	0.88
R4491:Far2	UTSW	6	148,074,907 (GRCm39)	missense	possibly damaging	0.88
R5034:Far2	UTSW	6	148,074,939 (GRCm39)	missense	probably benign	0.43
R5421:Far2	UTSW	6	148,047,690 (GRCm39)	splice site	probably null
R5673:Far2	UTSW	6	148,047,602 (GRCm39)	missense	possibly damaging	0.86
R6294:Far2	UTSW	6	148,058,980 (GRCm39)	missense	probably damaging	0.99
R6325:Far2	UTSW	6	148,058,995 (GRCm39)	missense	probably benign	0.30
R6783:Far2	UTSW	6	148,052,273 (GRCm39)	splice site	probably null
R7380:Far2	UTSW	6	148,082,493 (GRCm39)	missense	unknown
R7403:Far2	UTSW	6	148,060,475 (GRCm39)	missense	possibly damaging	0.93
R7484:Far2	UTSW	6	148,075,411 (GRCm39)	missense	probably damaging	1.00
R8276:Far2	UTSW	6	148,075,399 (GRCm39)	missense	probably benign	0.00
R8709:Far2	UTSW	6	148,067,133 (GRCm39)	missense	probably benign	0.00
R8774:Far2	UTSW	6	148,047,629 (GRCm39)	missense	probably benign	0.01
R8774-TAIL:Far2	UTSW	6	148,047,629 (GRCm39)	missense	probably benign	0.01
R9177:Far2	UTSW	6	148,060,418 (GRCm39)	missense	probably benign	0.00
R9268:Far2	UTSW	6	148,060,418 (GRCm39)	missense	probably benign	0.00
R9504:Far2	UTSW	6	148,059,453 (GRCm39)	missense	probably damaging	0.99
R9583:Far2	UTSW	6	148,059,434 (GRCm39)	missense	probably damaging	0.99
R9760:Far2	UTSW	6	148,060,448 (GRCm39)	missense	probably damaging	1.00
X0053:Far2	UTSW	6	148,067,138 (GRCm39)	missense	probably benign	0.00
Z1088:Far2	UTSW	6	148,040,156 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TGTGCATGCCATAGTGCCTG -3'
(R):5'- CTTAGAGGTATCTGAGGTTCCAG -3'

Sequencing Primer
(F):5'- CCATAGTGCCTGTGGAGTCAAATTC -3'
(R):5'- CCAGATGATGGGCTGGTATAATG -3'

Posted On

2017-08-16