Phenotypic Mutation 'maennelein' (pdf version)
Allele | maennelein |
Mutation Type |
splice site
(5 bp from exon)
|
Chromosome | 4 |
Coordinate | 65,233,033 bp (GRCm39) |
Base Change | G ⇒ A (forward strand) |
Gene |
Pappa
|
Gene Name | pregnancy-associated plasma protein A |
Synonym(s) | PAPP-A, PAG1, 8430414N03Rik, IGFBP-4ase |
Chromosomal Location |
65,042,411-65,275,746 bp (+) (GRCm39)
|
MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a secreted metalloproteinase which cleaves insulin-like growth factor binding proteins (IGFBPs). It is thought to be involved in local proliferative processes such as wound healing and bone remodeling. Low plasma level of this protein has been suggested as a biochemical marker for pregnancies with aneuploid fetuses. [provided by RefSeq, Jul 2008] PHENOTYPE: Homozygous null mutants are smaller than normal with delayed ossification, but are otherwise normal and fertile. [provided by MGI curators]
|
Accession Number | NCBI RefSeq: NM_021362; MGI:97479
|
Mapped | Yes |
Amino Acid Change |
|
Institutional Source | Beutler Lab |
Gene Model |
predicted gene model for protein(s):
[ENSMUSP00000081545 †]
† probably from a misspliced transcript
|
AlphaFold |
Q8R4K8 |
SMART Domains |
Protein: ENSMUSP00000081545 Gene: ENSMUSG00000028370
Domain | Start | End | E-Value | Type |
signal peptide
|
1 |
22 |
N/A |
INTRINSIC |
low complexity region
|
24 |
66 |
N/A |
INTRINSIC |
low complexity region
|
69 |
87 |
N/A |
INTRINSIC |
LamGL
|
114 |
263 |
1.55e-54 |
SMART |
NL
|
396 |
438 |
4.15e-8 |
SMART |
NL
|
441 |
471 |
6.73e-1 |
SMART |
Pfam:Peptidase_M43
|
500 |
657 |
2.5e-10 |
PFAM |
Blast:FN3
|
669 |
929 |
1e-165 |
BLAST |
CCP
|
1212 |
1277 |
1.39e-9 |
SMART |
CCP
|
1282 |
1339 |
1.08e-6 |
SMART |
CCP
|
1343 |
1407 |
1.64e-6 |
SMART |
CCP
|
1412 |
1468 |
8.06e-6 |
SMART |
NL
|
1544 |
1581 |
3.24e-10 |
SMART |
low complexity region
|
1584 |
1591 |
N/A |
INTRINSIC |
|
Predicted Effect |
probably null
|
Meta Mutation Damage Score |
0.9755 |
Is this an essential gene? |
Non Essential (E-score: 0.000) |
Phenotypic Category |
Unknown |
Candidate Explorer Status |
loading ... |
Single pedigree Linkage Analysis Data
|
|
Penetrance | |
Alleles Listed at MGI | All Mutations and Alleles(4) : Targeted (4)
|
Lab Alleles |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL01096:Pappa
|
APN |
4 |
65107553 |
missense |
probably damaging |
1.00 |
IGL01340:Pappa
|
APN |
4 |
65242109 |
missense |
possibly damaging |
0.49 |
IGL01482:Pappa
|
APN |
4 |
65074271 |
missense |
probably benign |
0.18 |
IGL01485:Pappa
|
APN |
4 |
65107536 |
missense |
probably damaging |
0.96 |
IGL01759:Pappa
|
APN |
4 |
65123395 |
splice site |
probably null |
|
IGL01860:Pappa
|
APN |
4 |
65123329 |
missense |
possibly damaging |
0.50 |
IGL01990:Pappa
|
APN |
4 |
65074924 |
splice site |
probably benign |
|
IGL02089:Pappa
|
APN |
4 |
65074361 |
missense |
possibly damaging |
0.75 |
IGL02153:Pappa
|
APN |
4 |
65215674 |
missense |
probably damaging |
0.96 |
IGL02184:Pappa
|
APN |
4 |
65258928 |
missense |
possibly damaging |
0.82 |
IGL02324:Pappa
|
APN |
4 |
65115045 |
missense |
probably damaging |
0.99 |
IGL02542:Pappa
|
APN |
4 |
65094518 |
missense |
probably damaging |
1.00 |
IGL02556:Pappa
|
APN |
4 |
65074863 |
missense |
possibly damaging |
0.56 |
IGL02698:Pappa
|
APN |
4 |
65099257 |
missense |
probably damaging |
1.00 |
IGL02903:Pappa
|
APN |
4 |
65180217 |
missense |
probably damaging |
1.00 |
IGL02974:Pappa
|
APN |
4 |
65123172 |
missense |
probably damaging |
1.00 |
IGL03107:Pappa
|
APN |
4 |
65122940 |
missense |
probably damaging |
1.00 |
IGL03376:Pappa
|
APN |
4 |
65115071 |
missense |
probably benign |
0.01 |
caer
|
UTSW |
4 |
65043128 |
missense |
probably damaging |
0.98 |
Maennel
|
UTSW |
4 |
65232824 |
missense |
probably benign |
0.05 |
mama
|
UTSW |
4 |
65123104 |
missense |
possibly damaging |
0.94 |
Revisitation
|
UTSW |
4 |
65212705 |
missense |
probably damaging |
0.96 |
Sesquester
|
UTSW |
4 |
65074612 |
missense |
possibly damaging |
0.66 |
untersuchen
|
UTSW |
4 |
65215494 |
missense |
probably damaging |
1.00 |
IGL02980:Pappa
|
UTSW |
4 |
65226011 |
missense |
probably benign |
0.25 |
PIT4498001:Pappa
|
UTSW |
4 |
65234469 |
missense |
probably damaging |
1.00 |
R0077:Pappa
|
UTSW |
4 |
65226049 |
missense |
probably damaging |
1.00 |
R0390:Pappa
|
UTSW |
4 |
65269850 |
splice site |
probably null |
|
R0458:Pappa
|
UTSW |
4 |
65074119 |
missense |
probably damaging |
1.00 |
R0883:Pappa
|
UTSW |
4 |
65107552 |
nonsense |
probably null |
|
R0946:Pappa
|
UTSW |
4 |
65233029 |
critical splice donor site |
probably null |
|
R1228:Pappa
|
UTSW |
4 |
65258926 |
missense |
probably damaging |
1.00 |
R1327:Pappa
|
UTSW |
4 |
65269840 |
splice site |
probably benign |
|
R1489:Pappa
|
UTSW |
4 |
65099185 |
missense |
possibly damaging |
0.85 |
R1619:Pappa
|
UTSW |
4 |
65094466 |
missense |
probably damaging |
1.00 |
R1856:Pappa
|
UTSW |
4 |
65258980 |
missense |
probably damaging |
1.00 |
R2047:Pappa
|
UTSW |
4 |
65149378 |
splice site |
probably benign |
|
R2102:Pappa
|
UTSW |
4 |
65234465 |
nonsense |
probably null |
|
R2127:Pappa
|
UTSW |
4 |
65215494 |
missense |
probably damaging |
1.00 |
R2143:Pappa
|
UTSW |
4 |
65099186 |
nonsense |
probably null |
|
R2144:Pappa
|
UTSW |
4 |
65099186 |
nonsense |
probably null |
|
R2166:Pappa
|
UTSW |
4 |
65074682 |
missense |
probably damaging |
1.00 |
R2167:Pappa
|
UTSW |
4 |
65074682 |
missense |
probably damaging |
1.00 |
R2168:Pappa
|
UTSW |
4 |
65074682 |
missense |
probably damaging |
1.00 |
R2178:Pappa
|
UTSW |
4 |
65269924 |
missense |
probably benign |
0.00 |
R2504:Pappa
|
UTSW |
4 |
65099126 |
nonsense |
probably null |
|
R4043:Pappa
|
UTSW |
4 |
65232824 |
missense |
probably benign |
0.05 |
R4289:Pappa
|
UTSW |
4 |
65074100 |
missense |
probably benign |
0.19 |
R4415:Pappa
|
UTSW |
4 |
65223532 |
missense |
probably benign |
0.00 |
R4529:Pappa
|
UTSW |
4 |
65149419 |
missense |
probably benign |
|
R4620:Pappa
|
UTSW |
4 |
65245265 |
missense |
probably benign |
0.43 |
R4657:Pappa
|
UTSW |
4 |
65233033 |
splice site |
probably null |
|
R4658:Pappa
|
UTSW |
4 |
65233033 |
splice site |
probably null |
|
R5074:Pappa
|
UTSW |
4 |
65123365 |
missense |
probably benign |
0.15 |
R5200:Pappa
|
UTSW |
4 |
65074076 |
missense |
probably damaging |
1.00 |
R5420:Pappa
|
UTSW |
4 |
65254017 |
critical splice donor site |
probably null |
|
R5469:Pappa
|
UTSW |
4 |
65123389 |
missense |
probably benign |
0.01 |
R5651:Pappa
|
UTSW |
4 |
65074589 |
missense |
probably damaging |
0.99 |
R5725:Pappa
|
UTSW |
4 |
65107647 |
missense |
probably damaging |
1.00 |
R5941:Pappa
|
UTSW |
4 |
65232830 |
missense |
possibly damaging |
0.52 |
R6002:Pappa
|
UTSW |
4 |
65215645 |
missense |
probably damaging |
0.99 |
R6252:Pappa
|
UTSW |
4 |
65107649 |
missense |
probably benign |
0.02 |
R6303:Pappa
|
UTSW |
4 |
65122891 |
missense |
probably damaging |
1.00 |
R6322:Pappa
|
UTSW |
4 |
65232896 |
missense |
probably damaging |
1.00 |
R6431:Pappa
|
UTSW |
4 |
65074701 |
missense |
probably damaging |
1.00 |
R6462:Pappa
|
UTSW |
4 |
65043128 |
missense |
probably damaging |
0.98 |
R6484:Pappa
|
UTSW |
4 |
65232896 |
missense |
probably damaging |
1.00 |
R6537:Pappa
|
UTSW |
4 |
65215519 |
missense |
probably damaging |
0.99 |
R6578:Pappa
|
UTSW |
4 |
65074374 |
missense |
possibly damaging |
0.48 |
R6704:Pappa
|
UTSW |
4 |
65123161 |
missense |
probably damaging |
1.00 |
R6789:Pappa
|
UTSW |
4 |
65099278 |
missense |
probably damaging |
1.00 |
R7023:Pappa
|
UTSW |
4 |
65269955 |
missense |
probably benign |
0.00 |
R7139:Pappa
|
UTSW |
4 |
65107687 |
missense |
probably benign |
0.30 |
R7158:Pappa
|
UTSW |
4 |
65123104 |
missense |
possibly damaging |
0.94 |
R7165:Pappa
|
UTSW |
4 |
65180110 |
missense |
probably damaging |
1.00 |
R7196:Pappa
|
UTSW |
4 |
65242128 |
splice site |
probably null |
|
R7410:Pappa
|
UTSW |
4 |
65253956 |
missense |
probably damaging |
1.00 |
R7457:Pappa
|
UTSW |
4 |
65107503 |
missense |
probably damaging |
1.00 |
R7506:Pappa
|
UTSW |
4 |
65149419 |
missense |
probably benign |
0.00 |
R7546:Pappa
|
UTSW |
4 |
65074352 |
missense |
possibly damaging |
0.48 |
R7975:Pappa
|
UTSW |
4 |
65212705 |
missense |
probably damaging |
0.96 |
R8111:Pappa
|
UTSW |
4 |
65180229 |
missense |
probably damaging |
0.99 |
R8260:Pappa
|
UTSW |
4 |
65234419 |
missense |
probably damaging |
0.99 |
R8347:Pappa
|
UTSW |
4 |
65245302 |
missense |
probably damaging |
1.00 |
R8520:Pappa
|
UTSW |
4 |
65254001 |
missense |
probably benign |
0.01 |
R8812:Pappa
|
UTSW |
4 |
65123166 |
missense |
possibly damaging |
0.94 |
R8815:Pappa
|
UTSW |
4 |
65099347 |
missense |
probably benign |
0.00 |
R9008:Pappa
|
UTSW |
4 |
65074426 |
missense |
probably damaging |
1.00 |
R9162:Pappa
|
UTSW |
4 |
65123040 |
missense |
probably damaging |
1.00 |
R9170:Pappa
|
UTSW |
4 |
65258962 |
missense |
probably damaging |
1.00 |
R9205:Pappa
|
UTSW |
4 |
65074612 |
missense |
possibly damaging |
0.66 |
R9336:Pappa
|
UTSW |
4 |
65042918 |
missense |
unknown |
|
R9389:Pappa
|
UTSW |
4 |
65099125 |
missense |
probably damaging |
1.00 |
R9781:Pappa
|
UTSW |
4 |
65043104 |
missense |
possibly damaging |
0.89 |
RF006:Pappa
|
UTSW |
4 |
65242110 |
missense |
probably benign |
0.00 |
RF020:Pappa
|
UTSW |
4 |
65123282 |
missense |
possibly damaging |
0.77 |
X0058:Pappa
|
UTSW |
4 |
65074469 |
missense |
probably damaging |
1.00 |
X0060:Pappa
|
UTSW |
4 |
65043178 |
missense |
probably benign |
0.00 |
Z1177:Pappa
|
UTSW |
4 |
65225995 |
missense |
probably damaging |
1.00 |
|
Mode of Inheritance |
Unknown |
Local Stock | |
Repository | |
Last Updated |
2019-09-04 9:30 PM
by Diantha La Vine
|
Record Created |
2019-01-22 2:12 PM
by Bruce Beutler
|
Record Posted |
2019-02-27 |
Phenotypic Description |
The maennelein phenotype was identified among G3 mice of the pedigree R4657, some of which showed reduced body weights compared to wild-type littermates (Figure 1).
|
Nature of Mutation |
Whole exome HiSeq sequencing of the G1 grandsire identified 103 mutations. The body weight phenotype was linked to a mutation in Pappa: a G to A transition at base pair 65,314,796 (v38) on chromosome 4, or base pair 190,623 in the GenBank genomic region NC_000070 within the donor splice site of intron 16 (5-base pairs from exon 16 [out of 22 total exons]). Linkage was found with a recessive model of inheritance, wherein four variant homozygotes departed phenotypically from six homozygous reference mice and six heterozygous mice with a P value of 3.983 x 10-8 (Figure 2). The effect of the mutation at the cDNA and protein levels has not been examined, but the mutation is predicted to result in the use of a cryptic site in exon 16. The resulting transcript would have a 71-base pair deletion of exon 16, resulting in a frame-shifted protein product beginning after amino acid 1,365 of the protein (which is normally 1,624 amino acids in length) and terminating after the inclusion of 23 aberrant amino acids.
<--exon 15 exon 16--> intron 16--> exon 17-->
4311 ……GCCCAGCTGAAAG GCAACAAC……AAGCACAAGGTGGGC……CCAAGAA gtaagtgccgcta…… ACGGGCTTT……GGTGACTTGTGA……
1315 ……-A--Q--L--K-- G--N--N-……-K--H--K-------……------- -T--G--F-……-G--D--L--*-
correct deleted aberrant
|
The donor splice site of intron 16, which is destroyed by the maennelein mutation, is indicated in blue lettering and the mutated nucleotide is indicated in red.
|
Illustration of Mutations in
Gene & Protein |
|
---|
Protein Prediction |
Pappa encodes pregnancy-associated plasma protein A (PAPP-A; alternatively, IGFBP4 protease or differentially expressed in placenta 1 [DIPLA1]), a member of the pappalysin subfamily of the metzincin protease family along with PAPP-A2 (see the record for Lilliputian) and ulilysin. PAPP-A is initially translated as a 1,624 proprotein; cleavage of the signal peptide and the propeptide (amino acids 23-80) generates the mature 1,544 amino acid peptide (1). PAPP-A has several domains, including a signaling peptide (amino acids 1-22), a laminin G-like domain, three Lin12/Notch repeats (LNRs), a metalloprotease region (amino acids 272-583), and five complement control protein (CCP) domains (alternatively, short consensus repeat [SCR] or Sushi domains; amino acids 1210-1279, 1280-1341, 1342-1409, 1410-1470, and 1473-1553) (Figure 3) (2). The maennelein mutation within the donor splice site of intron 16 is predicted to result in a 71-base pair deletion of exon 16, resulting in a frame-shifted protein product beginning after amino acid 1,365 of the protein. Please see the record caer for more information about Pappa.
|
Putative Mechanism | PAPP-A is a secreted metalloproteinase that cleaves insulin-like growth factor binding protein 2 (IGFBP2), IGFBP4, and IGFBP5. The IGFBPs regulate the IGF-I signaling pathways by binding IGF-I. IGFBP5 also has IGF-I-independent functions. IGFPB5 is able to bind its putative receptor to enter the cytoplasm and subsequently interact with, and regulate, other proteins. IGFBPs are carrier proteins that regulate the bioavailability of insulin-like growth factors (IGFs) by prolonging their-half-life and circulation turnover. IGFs are essential for the regulation of growth and development by influencing the proliferation, differentiation, and apoptosis of osteoblasts (3;4). IGFs bind to two types of receptors, IGF-IR and IGF-IIR, subsequently activating downstream tyrosine kinase pathways. In IGF-I-associated signaling, both the IRS-1/phosphoinositide 3-kinase/serine–threonine kinase pathway and the Ras/mitogen-activated protein kinase/extracellular signal-regulated kinase pathway are activated, which subsequently promote cell proliferation, tissue differentiation, and protection from apoptosis. Pappa-deficient (Pappa-/-) mice showed reduced body sizes and weights (60 to 70% of wild-type mice) as well as delayed bone ossification (5). The phenotype of the maennelein mice mimics that of the Pappa-/- mice, indicating loss of PAPP-A function. PAPP-A functions as a growth-promoting enzyme through its role in cleaving IGFBPs (and subsequent release of bioactive IGF). IGFBP4 cleavage is required to activate most, if not all, IGF2-mediated growth-promoting activity.
|
Primers |
PCR Primer
maennelein_pcr_F: CTGTGTCTTCCAGGCAACAAC
maennelein_pcr_R: CTCAAGGTCTATGGCTATGACC
Sequencing Primer
maennelein_seq_F: CAACAGCTTTCTGACCTGTATGGAAG
maennelein_seq_R: AAGGTCTATGGCTATGACCCTACTG
|
Genotyping | PCR program 1) 94°C 2:00 2) 94°C 0:30 3) 55°C 0:30 4) 72°C 1:00 5) repeat steps (2-4) 40x 6) 72°C 10:00 7) 4°C hold
The following sequence of 260 nucleotides is amplified (chromosome 4, + strand):
1 ctgtgtcttc caggcaacaa cagctttctg acctgtatgg aagatggact gtggtccttc 61 ccagaggcct tgtgtgagct catgtgcctc gccccacccc cagttcccaa tgcggaccta 121 cagacagccc ggtgtcgaga gaacaagcac aaggtgggct ccttctgcaa gtacaagtgt 181 aaacctggat accacgtgcc tggctcatct cggaagtcca agaagtaagt gccgctaggg 241 tcatagccat agaccttgag
Primer binding sites are underlined and the sequencing primers are highlighted; the mutated nucleotide is shown in red. |
References | 1. Haaning, J., Oxvig, C., Overgaard, M. T., Ebbesen, P., Kristensen, T., and Sottrup-Jensen, L. (1996) Complete cDNA Sequence of the Preproform of Human Pregnancy-Associated Plasma Protein-A. Evidence for Expression in the Brain and Induction by cAMP. Eur J Biochem. 237, 159-163.
2. Kristensen, T., Oxvig, C., Sand, O., Moller, N. P., and Sottrup-Jensen, L. (1994) Amino Acid Sequence of Human Pregnancy-Associated Plasma Protein-A Derived from Cloned cDNA. Biochemistry. 33, 1592-1598.
4. Mohan, S., Richman, C., Guo, R., Amaar, Y., Donahue, L. R., Wergedal, J., and Baylink, D. J. (2003) Insulin-Like Growth Factor Regulates Peak Bone Mineral Density in Mice by both Growth Hormone-Dependent and -Independent Mechanisms. Endocrinology. 144, 929-936.
5. Conover, C. A., Bale, L. K., Overgaard, M. T., Johnstone, E. W., Laursen, U. H., Fuchtbauer, E. M., Oxvig, C., and van Deursen, J. (2004) Metalloproteinase Pregnancy-Associated Plasma Protein A is a Critical Growth Regulatory Factor during Fetal Development. Development. 131, 1187-1194.
|
Science Writers | Anne Murray |
Illustrators | Diantha La Vine |
Authors | Zhao Zhang, Jin Huk Choi, Hexin Shi, Ying Wang, and Bruce Beutler |