Phenotypic Mutation 'maennelein' (pdf version)
Allelemaennelein
Mutation Type splice site (5 bp from exon)
Chromosome4
Coordinate65,233,033 bp (GRCm39)
Base Change G ⇒ A (forward strand)
Gene Pappa
Gene Name pregnancy-associated plasma protein A
Synonym(s) PAPP-A, PAG1, 8430414N03Rik, IGFBP-4ase
Chromosomal Location 65,042,411-65,275,746 bp (+) (GRCm39)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a secreted metalloproteinase which cleaves insulin-like growth factor binding proteins (IGFBPs). It is thought to be involved in local proliferative processes such as wound healing and bone remodeling. Low plasma level of this protein has been suggested as a biochemical marker for pregnancies with aneuploid fetuses. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous null mutants are smaller than normal with delayed ossification, but are otherwise normal and fertile. [provided by MGI curators]
Accession Number

NCBI RefSeq: NM_021362; MGI:97479

MappedYes 
Amino Acid Change
Institutional SourceBeutler Lab
Gene Model predicted gene model for protein(s): [ENSMUSP00000081545 ]   † probably from a misspliced transcript
AlphaFold Q8R4K8
SMART Domains Protein: ENSMUSP00000081545
Gene: ENSMUSG00000028370

DomainStartEndE-ValueType
signal peptide 1 22 N/A INTRINSIC
low complexity region 24 66 N/A INTRINSIC
low complexity region 69 87 N/A INTRINSIC
LamGL 114 263 1.55e-54 SMART
NL 396 438 4.15e-8 SMART
NL 441 471 6.73e-1 SMART
Pfam:Peptidase_M43 500 657 2.5e-10 PFAM
Blast:FN3 669 929 1e-165 BLAST
CCP 1212 1277 1.39e-9 SMART
CCP 1282 1339 1.08e-6 SMART
CCP 1343 1407 1.64e-6 SMART
CCP 1412 1468 8.06e-6 SMART
NL 1544 1581 3.24e-10 SMART
low complexity region 1584 1591 N/A INTRINSIC
Predicted Effect probably null
Meta Mutation Damage Score 0.9755 question?
Is this an essential gene? Non Essential (E-score: 0.000) question?
Phenotypic Category Unknown
Candidate Explorer Status loading ...
Single pedigree
Linkage Analysis Data
Penetrance  
Alleles Listed at MGI

All Mutations and Alleles(4) : Targeted (4)

Lab Alleles
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01096:Pappa APN 4 65107553 missense probably damaging 1.00
IGL01340:Pappa APN 4 65242109 missense possibly damaging 0.49
IGL01482:Pappa APN 4 65074271 missense probably benign 0.18
IGL01485:Pappa APN 4 65107536 missense probably damaging 0.96
IGL01759:Pappa APN 4 65123395 splice site probably null
IGL01860:Pappa APN 4 65123329 missense possibly damaging 0.50
IGL01990:Pappa APN 4 65074924 splice site probably benign
IGL02089:Pappa APN 4 65074361 missense possibly damaging 0.75
IGL02153:Pappa APN 4 65215674 missense probably damaging 0.96
IGL02184:Pappa APN 4 65258928 missense possibly damaging 0.82
IGL02324:Pappa APN 4 65115045 missense probably damaging 0.99
IGL02542:Pappa APN 4 65094518 missense probably damaging 1.00
IGL02556:Pappa APN 4 65074863 missense possibly damaging 0.56
IGL02698:Pappa APN 4 65099257 missense probably damaging 1.00
IGL02903:Pappa APN 4 65180217 missense probably damaging 1.00
IGL02974:Pappa APN 4 65123172 missense probably damaging 1.00
IGL03107:Pappa APN 4 65122940 missense probably damaging 1.00
IGL03376:Pappa APN 4 65115071 missense probably benign 0.01
caer UTSW 4 65043128 missense probably damaging 0.98
Maennel UTSW 4 65232824 missense probably benign 0.05
mama UTSW 4 65123104 missense possibly damaging 0.94
Revisitation UTSW 4 65212705 missense probably damaging 0.96
Sesquester UTSW 4 65074612 missense possibly damaging 0.66
untersuchen UTSW 4 65215494 missense probably damaging 1.00
IGL02980:Pappa UTSW 4 65226011 missense probably benign 0.25
PIT4498001:Pappa UTSW 4 65234469 missense probably damaging 1.00
R0077:Pappa UTSW 4 65226049 missense probably damaging 1.00
R0390:Pappa UTSW 4 65269850 splice site probably null
R0458:Pappa UTSW 4 65074119 missense probably damaging 1.00
R0883:Pappa UTSW 4 65107552 nonsense probably null
R0946:Pappa UTSW 4 65233029 critical splice donor site probably null
R1228:Pappa UTSW 4 65258926 missense probably damaging 1.00
R1327:Pappa UTSW 4 65269840 splice site probably benign
R1489:Pappa UTSW 4 65099185 missense possibly damaging 0.85
R1619:Pappa UTSW 4 65094466 missense probably damaging 1.00
R1856:Pappa UTSW 4 65258980 missense probably damaging 1.00
R2047:Pappa UTSW 4 65149378 splice site probably benign
R2102:Pappa UTSW 4 65234465 nonsense probably null
R2127:Pappa UTSW 4 65215494 missense probably damaging 1.00
R2143:Pappa UTSW 4 65099186 nonsense probably null
R2144:Pappa UTSW 4 65099186 nonsense probably null
R2166:Pappa UTSW 4 65074682 missense probably damaging 1.00
R2167:Pappa UTSW 4 65074682 missense probably damaging 1.00
R2168:Pappa UTSW 4 65074682 missense probably damaging 1.00
R2178:Pappa UTSW 4 65269924 missense probably benign 0.00
R2504:Pappa UTSW 4 65099126 nonsense probably null
R4043:Pappa UTSW 4 65232824 missense probably benign 0.05
R4289:Pappa UTSW 4 65074100 missense probably benign 0.19
R4415:Pappa UTSW 4 65223532 missense probably benign 0.00
R4529:Pappa UTSW 4 65149419 missense probably benign
R4620:Pappa UTSW 4 65245265 missense probably benign 0.43
R4657:Pappa UTSW 4 65233033 splice site probably null
R4658:Pappa UTSW 4 65233033 splice site probably null
R5074:Pappa UTSW 4 65123365 missense probably benign 0.15
R5200:Pappa UTSW 4 65074076 missense probably damaging 1.00
R5420:Pappa UTSW 4 65254017 critical splice donor site probably null
R5469:Pappa UTSW 4 65123389 missense probably benign 0.01
R5651:Pappa UTSW 4 65074589 missense probably damaging 0.99
R5725:Pappa UTSW 4 65107647 missense probably damaging 1.00
R5941:Pappa UTSW 4 65232830 missense possibly damaging 0.52
R6002:Pappa UTSW 4 65215645 missense probably damaging 0.99
R6252:Pappa UTSW 4 65107649 missense probably benign 0.02
R6303:Pappa UTSW 4 65122891 missense probably damaging 1.00
R6322:Pappa UTSW 4 65232896 missense probably damaging 1.00
R6431:Pappa UTSW 4 65074701 missense probably damaging 1.00
R6462:Pappa UTSW 4 65043128 missense probably damaging 0.98
R6484:Pappa UTSW 4 65232896 missense probably damaging 1.00
R6537:Pappa UTSW 4 65215519 missense probably damaging 0.99
R6578:Pappa UTSW 4 65074374 missense possibly damaging 0.48
R6704:Pappa UTSW 4 65123161 missense probably damaging 1.00
R6789:Pappa UTSW 4 65099278 missense probably damaging 1.00
R7023:Pappa UTSW 4 65269955 missense probably benign 0.00
R7139:Pappa UTSW 4 65107687 missense probably benign 0.30
R7158:Pappa UTSW 4 65123104 missense possibly damaging 0.94
R7165:Pappa UTSW 4 65180110 missense probably damaging 1.00
R7196:Pappa UTSW 4 65242128 splice site probably null
R7410:Pappa UTSW 4 65253956 missense probably damaging 1.00
R7457:Pappa UTSW 4 65107503 missense probably damaging 1.00
R7506:Pappa UTSW 4 65149419 missense probably benign 0.00
R7546:Pappa UTSW 4 65074352 missense possibly damaging 0.48
R7975:Pappa UTSW 4 65212705 missense probably damaging 0.96
R8111:Pappa UTSW 4 65180229 missense probably damaging 0.99
R8260:Pappa UTSW 4 65234419 missense probably damaging 0.99
R8347:Pappa UTSW 4 65245302 missense probably damaging 1.00
R8520:Pappa UTSW 4 65254001 missense probably benign 0.01
R8812:Pappa UTSW 4 65123166 missense possibly damaging 0.94
R8815:Pappa UTSW 4 65099347 missense probably benign 0.00
R9008:Pappa UTSW 4 65074426 missense probably damaging 1.00
R9162:Pappa UTSW 4 65123040 missense probably damaging 1.00
R9170:Pappa UTSW 4 65258962 missense probably damaging 1.00
R9205:Pappa UTSW 4 65074612 missense possibly damaging 0.66
R9336:Pappa UTSW 4 65042918 missense unknown
R9389:Pappa UTSW 4 65099125 missense probably damaging 1.00
R9781:Pappa UTSW 4 65043104 missense possibly damaging 0.89
RF006:Pappa UTSW 4 65242110 missense probably benign 0.00
RF020:Pappa UTSW 4 65123282 missense possibly damaging 0.77
X0058:Pappa UTSW 4 65074469 missense probably damaging 1.00
X0060:Pappa UTSW 4 65043178 missense probably benign 0.00
Z1177:Pappa UTSW 4 65225995 missense probably damaging 1.00
Mode of Inheritance Unknown
Local Stock
Repository
Last Updated 2019-09-04 9:30 PM by Diantha La Vine
Record Created 2019-01-22 2:12 PM by Bruce Beutler
Record Posted 2019-02-27
Phenotypic Description

Figure 1. Maennelein mice exhibited reduced body weights compared to wild-type littermates. Scaled weights are shown. Abbreviations: WT, wild-type; REF, homozygous reference mice; HET, heterozygous variant mice; VAR, homozygous variant mice. Mean (μ) and standard deviation (σ) are indicated.

The maennelein phenotype was identified among G3 mice of the pedigree R4657, some of which showed reduced body weights compared to wild-type littermates (Figure 1).

Nature of Mutation

Figure 2. Linkage mapping of the reduced body weight phenotype using a recessive model of inheritance. Manhattan plot shows -log10 P values (Y-axis) plotted against the chromosome positions of 103 mutations (X-axis) identified in the G1 male of pedigree R4657. Weight data are shown for single locus linkage analysis without consideration of G2 dam identity. Horizontal pink and red lines represent thresholds of P = 0.05, and the threshold for P = 0.05 after applying Bonferroni correction, respectively.

Whole exome HiSeq sequencing of the G1 grandsire identified 103 mutations. The body weight phenotype was linked to a mutation in Pappa:  a G to A transition at base pair 65,314,796 (v38) on chromosome 4, or base pair 190,623 in the GenBank genomic region NC_000070 within the donor splice site of intron 16 (5-base pairs from exon 16 [out of 22 total exons]). Linkage was found with a recessive model of inheritance, wherein four variant homozygotes departed phenotypically from six homozygous reference mice and six heterozygous mice with a P value of 3.983 x 10-8 (Figure 2).  

The effect of the mutation at the cDNA and protein levels has not been examined, but the mutation is predicted to result in the use of a cryptic site in exon 16. The resulting transcript would have a 71-base pair deletion of exon 16, resulting in a frame-shifted protein product beginning after amino acid 1,365 of the protein (which is normally 1,624 amino acids in length) and terminating after the inclusion of 23 aberrant amino acids.

          <--exon 15 exon 16-->                         intron 16-->    exon 17-->
4311 ……GCCCAGCTGAAAG GCAACAAC……AAGCACAAGGTGGGC……CCAAGAA gtaagtgccgcta…… ACGGGCTTT……GGTGACTTGTGA……
1315 ……-A--Q--L--K-- G--N--N-……-K--H--K-------……-------                 -T--G--F-……-G--D--L--*-
                  correct                   deleted                            aberrant
 

The donor splice site of intron 16, which is destroyed by the maennelein mutation, is indicated in blue lettering and the mutated nucleotide is indicated in red.

Illustration of Mutations in
Gene & Protein
Protein Prediction
Figure 3. Domain organization of PAPP-A. The maennelein mutation destroys the donor splice site if intron 16. This image is interactive. Other mutations found in PAPP-A are noted in red. Click on each allele for more information. Abbreviations: SP, signal peptide; LNR: Lin12/Notch repeats; CCP, complement control protein

Pappa encodes pregnancy-associated plasma protein A (PAPP-A; alternatively, IGFBP4 protease or differentially expressed in placenta 1 [DIPLA1]), a member of the pappalysin subfamily of the metzincin protease family along with PAPP-A2 (see the record for Lilliputian) and ulilysin. PAPP-A is initially translated as a 1,624 proprotein; cleavage of the signal peptide and the propeptide (amino acids 23-80) generates the mature 1,544 amino acid peptide (1). PAPP-A has several domains, including a signaling peptide (amino acids 1-22), a laminin G-like domain, three Lin12/Notch repeats (LNRs), a metalloprotease region (amino acids 272-583), and five complement control protein (CCP) domains (alternatively, short consensus repeat [SCR] or Sushi domains; amino acids 1210-1279, 1280-1341, 1342-1409, 1410-1470, and 1473-1553) (Figure 3) (2).

The maennelein mutation within the donor splice site of intron 16 is predicted to result in a 71-base pair deletion of exon 16, resulting in a frame-shifted protein product beginning after amino acid 1,365 of the protein.

Please see the record caer for more information about Pappa.

Putative Mechanism

PAPP-A is a secreted metalloproteinase that cleaves insulin-like growth factor binding protein 2 (IGFBP2), IGFBP4, and IGFBP5. The IGFBPs regulate the IGF-I signaling pathways by binding IGF-I. IGFBP5 also has IGF-I-independent functions. IGFPB5 is able to bind its putative receptor to enter the cytoplasm and subsequently interact with, and regulate, other proteins. IGFBPs are carrier proteins that regulate the bioavailability of insulin-like growth factors (IGFs) by prolonging their-half-life and circulation turnover. IGFs are essential for the regulation of growth and development by influencing the proliferation, differentiation, and apoptosis of osteoblasts (3;4). IGFs bind to two types of receptors, IGF-IR and IGF-IIR, subsequently activating downstream tyrosine kinase pathways. In IGF-I-associated signaling, both the IRS-1/phosphoinositide 3-kinase/serine–threonine kinase pathway and the Ras/mitogen-activated protein kinase/extracellular signal-regulated kinase pathway are activated, which subsequently promote cell proliferation, tissue differentiation, and protection from apoptosis.

Pappa-deficient (Pappa-/-) mice showed reduced body sizes and weights (60 to 70% of wild-type mice) as well as delayed bone ossification (5). The phenotype of the maennelein mice mimics that of the Pappa-/- mice, indicating loss of PAPP-A function. PAPP-A functions as a growth-promoting enzyme through its role in cleaving IGFBPs (and subsequent release of bioactive IGF). IGFBP4 cleavage is required to activate most, if not all, IGF2-mediated growth-promoting activity.

Primers PCR Primer
maennelein_pcr_F: CTGTGTCTTCCAGGCAACAAC
maennelein_pcr_R: CTCAAGGTCTATGGCTATGACC

Sequencing Primer
maennelein_seq_F: CAACAGCTTTCTGACCTGTATGGAAG
maennelein_seq_R: AAGGTCTATGGCTATGACCCTACTG
Genotyping

PCR program

1) 94°C 2:00
2) 94°C 0:30
3) 55°C 0:30
4) 72°C 1:00
5) repeat steps (2-4) 40x
6) 72°C 10:00
7) 4°C hold


The following sequence of 260 nucleotides is amplified (chromosome 4, + strand):


1   ctgtgtcttc caggcaacaa cagctttctg acctgtatgg aagatggact gtggtccttc
61  ccagaggcct tgtgtgagct catgtgcctc gccccacccc cagttcccaa tgcggaccta
121 cagacagccc ggtgtcgaga gaacaagcac aaggtgggct ccttctgcaa gtacaagtgt
181 aaacctggat accacgtgcc tggctcatct cggaagtcca agaagtaagt gccgctaggg
241 tcatagccat agaccttgag 


Primer binding sites are underlined and the sequencing primers are highlighted; the mutated nucleotide is shown in red.

References
Science Writers Anne Murray
Illustrators Diantha La Vine
AuthorsZhao Zhang, Jin Huk Choi, Hexin Shi, Ying Wang, and Bruce Beutler