Incidental Mutation 'R0840:Pisd'
ID |
77102 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Pisd
|
Ensembl Gene |
ENSMUSG00000023452 |
Gene Name |
phosphatidylserine decarboxylase |
Synonyms |
9030221M09Rik |
MMRRC Submission |
039019-MU
|
Accession Numbers |
|
Essential gene? |
Essential
(E-score: 1.000)
|
Stock # |
R0840 (G1)
|
Quality Score |
225 |
Status
|
Validated
|
Chromosome |
5 |
Chromosomal Location |
32893645-32942990 bp(-) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
A to G
at 32894656 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Isoleucine to Threonine
at position 380
(I380T)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000051438
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000061895]
[ENSMUST00000071829]
[ENSMUST00000120591]
[ENSMUST00000135248]
[ENSMUST00000144673]
[ENSMUST00000142957]
[ENSMUST00000202283]
[ENSMUST00000197787]
[ENSMUST00000200390]
|
AlphaFold |
Q8BSF4 |
Predicted Effect |
probably damaging
Transcript: ENSMUST00000061895
AA Change: I380T
PolyPhen 2
Score 0.997 (Sensitivity: 0.41; Specificity: 0.98)
|
SMART Domains |
Protein: ENSMUSP00000051438 Gene: ENSMUSG00000023452 AA Change: I380T
Domain | Start | End | E-Value | Type |
Pfam:PS_Dcarbxylase
|
162 |
405 |
1.1e-71 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000071829
|
SMART Domains |
Protein: ENSMUSP00000071732 Gene: ENSMUSG00000023452
Domain | Start | End | E-Value | Type |
Pfam:PS_Dcarbxylase
|
131 |
260 |
3.9e-35 |
PFAM |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000119864
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000120591
AA Change: I349T
PolyPhen 2
Score 0.992 (Sensitivity: 0.70; Specificity: 0.97)
|
SMART Domains |
Protein: ENSMUSP00000112573 Gene: ENSMUSG00000023452 AA Change: I349T
Domain | Start | End | E-Value | Type |
Pfam:PS_Dcarbxylase
|
131 |
374 |
1.1e-75 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000135248
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000138360
|
Predicted Effect |
probably damaging
Transcript: ENSMUST00000144673
AA Change: I550T
PolyPhen 2
Score 0.994 (Sensitivity: 0.69; Specificity: 0.97)
|
SMART Domains |
Protein: ENSMUSP00000124923 Gene: ENSMUSG00000093574 AA Change: I550T
Domain | Start | End | E-Value | Type |
Pfam:Tantalus
|
158 |
193 |
1.2e-15 |
PFAM |
Pfam:PS_Dcarbxylase
|
332 |
575 |
2.1e-71 |
PFAM |
|
Predicted Effect |
unknown
Transcript: ENSMUST00000142779
AA Change: I332T
|
SMART Domains |
Protein: ENSMUSP00000122705 Gene: ENSMUSG00000023452 AA Change: I332T
Domain | Start | End | E-Value | Type |
Pfam:PS_Dcarbxylase
|
153 |
270 |
1.7e-33 |
PFAM |
Pfam:PS_Dcarbxylase
|
268 |
358 |
2.1e-19 |
PFAM |
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000202641
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000196545
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000201314
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000202224
|
Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000201980
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000142957
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000202283
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000197787
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000200390
|
Meta Mutation Damage Score |
0.6197 |
Coding Region Coverage |
- 1x: 99.3%
- 3x: 98.7%
- 10x: 97.1%
- 20x: 94.1%
|
Validation Efficiency |
100% (51/51) |
MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene catalyzes the conversion of phosphatidylserine to phosphatidylethanolamine in the inner mitochondrial membrane. The encoded protein is active in phospholipid metabolism and interorganelle trafficking of phosphatidylserine. [provided by RefSeq, May 2016] PHENOTYPE: Mice homozygous for a null mutation in this gene display embryogenesis defects such as abnormal trophoblast development, abnormal extraembronic tissue morphology and abnormal mitochondrial morphology. [provided by MGI curators]
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 50 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
2700049A03Rik |
C |
G |
12: 71,205,657 (GRCm39) |
Q434E |
probably benign |
Het |
A930011G23Rik |
T |
C |
5: 99,382,547 (GRCm39) |
T234A |
probably benign |
Het |
Acot5 |
G |
A |
12: 84,122,614 (GRCm39) |
W399* |
probably null |
Het |
Adra1a |
A |
G |
14: 66,965,159 (GRCm39) |
E383G |
possibly damaging |
Het |
Ahnak |
T |
A |
19: 8,982,427 (GRCm39) |
I1237N |
probably damaging |
Het |
Bsg |
A |
G |
10: 79,545,519 (GRCm39) |
T28A |
probably damaging |
Het |
Cacna1i |
A |
T |
15: 80,243,150 (GRCm39) |
I436F |
possibly damaging |
Het |
Cd109 |
T |
C |
9: 78,571,612 (GRCm39) |
I417T |
probably benign |
Het |
Cep295 |
A |
T |
9: 15,245,611 (GRCm39) |
D948E |
probably benign |
Het |
Cfap92 |
G |
T |
6: 87,657,260 (GRCm39) |
|
noncoding transcript |
Het |
Clcn3 |
C |
A |
8: 61,382,188 (GRCm39) |
V467F |
probably benign |
Het |
Cntnap3 |
T |
C |
13: 64,935,724 (GRCm39) |
S380G |
possibly damaging |
Het |
Dab1 |
C |
T |
4: 104,588,948 (GRCm39) |
A524V |
probably benign |
Het |
Dll4 |
T |
A |
2: 119,156,966 (GRCm39) |
N79K |
probably benign |
Het |
Ep300 |
A |
T |
15: 81,529,134 (GRCm39) |
N1558I |
unknown |
Het |
Fblim1 |
A |
G |
4: 141,308,320 (GRCm39) |
F330L |
possibly damaging |
Het |
Fbxo46 |
T |
A |
7: 18,871,073 (GRCm39) |
M564K |
possibly damaging |
Het |
Fnip1 |
T |
A |
11: 54,384,007 (GRCm39) |
|
probably benign |
Het |
Foxl2 |
A |
T |
9: 98,837,984 (GRCm39) |
K91* |
probably null |
Het |
Gapvd1 |
C |
A |
2: 34,619,125 (GRCm39) |
V83F |
probably benign |
Het |
Guk1 |
G |
A |
11: 59,075,921 (GRCm39) |
R146C |
probably damaging |
Het |
Irf8 |
G |
A |
8: 121,480,220 (GRCm39) |
G153S |
probably benign |
Het |
Kcnu1 |
T |
A |
8: 26,403,712 (GRCm39) |
M1K |
probably null |
Het |
Krt32 |
G |
A |
11: 99,972,068 (GRCm39) |
P427S |
probably benign |
Het |
Lrp12 |
A |
G |
15: 39,739,554 (GRCm39) |
S529P |
probably damaging |
Het |
Mettl22 |
T |
C |
16: 8,300,021 (GRCm39) |
V134A |
probably damaging |
Het |
Morc2b |
G |
T |
17: 33,355,086 (GRCm39) |
H895Q |
probably benign |
Het |
Nrros |
T |
C |
16: 31,962,241 (GRCm39) |
D556G |
probably damaging |
Het |
Nrxn3 |
A |
G |
12: 90,298,567 (GRCm39) |
S1367G |
possibly damaging |
Het |
Or10al7 |
A |
G |
17: 38,366,463 (GRCm39) |
F7S |
probably benign |
Het |
Or56b1b |
A |
T |
7: 108,164,823 (GRCm39) |
S60T |
probably benign |
Het |
Pcnx3 |
T |
A |
19: 5,735,729 (GRCm39) |
|
probably null |
Het |
Pgap2 |
A |
T |
7: 101,886,655 (GRCm39) |
M226L |
probably damaging |
Het |
Pik3c2g |
A |
G |
6: 139,841,798 (GRCm39) |
I616M |
probably damaging |
Het |
Pkhd1 |
T |
C |
1: 20,420,745 (GRCm39) |
I2454V |
probably damaging |
Het |
Plpp2 |
A |
G |
10: 79,363,378 (GRCm39) |
I151T |
probably benign |
Het |
Polr3a |
G |
A |
14: 24,502,268 (GRCm39) |
T1295I |
possibly damaging |
Het |
Pot1a |
T |
C |
6: 25,748,283 (GRCm39) |
|
probably benign |
Het |
Prpf39 |
T |
G |
12: 65,094,980 (GRCm39) |
N219K |
probably benign |
Het |
Rnf17 |
T |
A |
14: 56,712,904 (GRCm39) |
N790K |
probably damaging |
Het |
Slit3 |
C |
T |
11: 35,514,263 (GRCm39) |
|
probably benign |
Het |
Stx1a |
T |
A |
5: 135,070,088 (GRCm39) |
|
probably benign |
Het |
Tenm3 |
C |
A |
8: 48,788,777 (GRCm39) |
V690F |
probably damaging |
Het |
Tmcc3 |
A |
G |
10: 94,414,633 (GRCm39) |
I143V |
probably benign |
Het |
Tmem41b |
G |
A |
7: 109,580,256 (GRCm39) |
S36F |
probably damaging |
Het |
Trim5 |
A |
T |
7: 103,914,978 (GRCm39) |
W364R |
probably damaging |
Het |
Ttn |
T |
C |
2: 76,617,155 (GRCm39) |
Y16403C |
probably damaging |
Het |
Vps8 |
T |
C |
16: 21,275,071 (GRCm39) |
S210P |
probably damaging |
Het |
Zbtb3 |
T |
A |
19: 8,780,821 (GRCm39) |
S145T |
possibly damaging |
Het |
Zfp882 |
T |
A |
8: 72,668,530 (GRCm39) |
C452* |
probably null |
Het |
|
Other mutations in Pisd |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL00539:Pisd
|
APN |
5 |
32,895,756 (GRCm39) |
missense |
probably benign |
0.02 |
IGL00540:Pisd
|
APN |
5 |
32,895,756 (GRCm39) |
missense |
probably benign |
0.02 |
IGL00577:Pisd
|
APN |
5 |
32,895,756 (GRCm39) |
missense |
probably benign |
0.02 |
IGL00580:Pisd
|
APN |
5 |
32,895,756 (GRCm39) |
missense |
probably benign |
0.02 |
IGL00590:Pisd
|
APN |
5 |
32,895,756 (GRCm39) |
missense |
probably benign |
0.02 |
IGL00990:Pisd
|
APN |
5 |
32,896,702 (GRCm39) |
missense |
probably benign |
0.24 |
IGL01899:Pisd
|
APN |
5 |
32,896,476 (GRCm39) |
splice site |
probably null |
|
IGL01908:Pisd
|
APN |
5 |
32,896,476 (GRCm39) |
splice site |
probably null |
|
IGL01928:Pisd
|
APN |
5 |
32,896,476 (GRCm39) |
splice site |
probably null |
|
IGL01931:Pisd
|
APN |
5 |
32,896,476 (GRCm39) |
splice site |
probably null |
|
IGL01935:Pisd
|
APN |
5 |
32,896,476 (GRCm39) |
splice site |
probably null |
|
IGL01948:Pisd
|
APN |
5 |
32,896,476 (GRCm39) |
splice site |
probably null |
|
IGL01952:Pisd
|
APN |
5 |
32,896,476 (GRCm39) |
splice site |
probably null |
|
IGL02195:Pisd
|
APN |
5 |
32,894,659 (GRCm39) |
missense |
probably damaging |
1.00 |
shandong
|
UTSW |
5 |
32,922,140 (GRCm39) |
missense |
possibly damaging |
0.94 |
R0674:Pisd
|
UTSW |
5 |
32,931,781 (GRCm39) |
missense |
probably benign |
0.00 |
R1976:Pisd
|
UTSW |
5 |
32,896,209 (GRCm39) |
missense |
probably damaging |
1.00 |
R1986:Pisd
|
UTSW |
5 |
32,894,672 (GRCm39) |
missense |
probably damaging |
1.00 |
R2044:Pisd
|
UTSW |
5 |
32,922,140 (GRCm39) |
missense |
possibly damaging |
0.94 |
R5705:Pisd
|
UTSW |
5 |
32,894,707 (GRCm39) |
missense |
probably benign |
0.14 |
R5756:Pisd
|
UTSW |
5 |
32,895,842 (GRCm39) |
missense |
probably damaging |
1.00 |
R6249:Pisd
|
UTSW |
5 |
32,896,188 (GRCm39) |
missense |
probably damaging |
1.00 |
R6389:Pisd
|
UTSW |
5 |
32,922,191 (GRCm39) |
missense |
probably damaging |
1.00 |
R6913:Pisd
|
UTSW |
5 |
32,894,773 (GRCm39) |
missense |
probably damaging |
1.00 |
R7143:Pisd
|
UTSW |
5 |
32,895,846 (GRCm39) |
missense |
possibly damaging |
0.73 |
R7571:Pisd
|
UTSW |
5 |
32,894,681 (GRCm39) |
missense |
probably damaging |
1.00 |
R7626:Pisd
|
UTSW |
5 |
32,898,032 (GRCm39) |
missense |
probably benign |
0.04 |
R8903:Pisd
|
UTSW |
5 |
32,895,755 (GRCm39) |
missense |
probably benign |
0.18 |
R9310:Pisd
|
UTSW |
5 |
32,894,784 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
Predicted Primers |
PCR Primer
(F):5'- TTTGGGGTCAAATCACACCCACC -3'
(R):5'- GCGCTAACCTTTCAGCATTTATGTCTG -3'
Sequencing Primer
(F):5'- TCTAGGTCCTGTCCTGAGAGAC -3'
(R):5'- GCCTTGTCAAAGTCACAGC -3'
|
Posted On |
2013-10-16 |