Incidental Mutation 'R7286:Nat10'
ID 565980
Institutional Source Beutler Lab
Gene Symbol Nat10
Ensembl Gene ENSMUSG00000027185
Gene Name N-acetyltransferase 10
Synonyms
MMRRC Submission 045394-MU
Accession Numbers
Essential gene? Essential (E-score: 1.000) question?
Stock # R7286 (G1)
Quality Score 225.009
Status Not validated
Chromosome 2
Chromosomal Location 103551601-103591615 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 103584514 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Lysine to Glutamic Acid at position 88 (K88E)
Ref Sequence ENSEMBL: ENSMUSP00000028608 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000028608] [ENSMUST00000140895] [ENSMUST00000148798]
AlphaFold Q8K224
Predicted Effect probably benign
Transcript: ENSMUST00000028608
AA Change: K88E

PolyPhen 2 Score 0.022 (Sensitivity: 0.95; Specificity: 0.81)
SMART Domains Protein: ENSMUSP00000028608
Gene: ENSMUSG00000027185
AA Change: K88E

DomainStartEndE-ValueType
Pfam:DUF1726 107 201 6.9e-39 PFAM
low complexity region 226 242 N/A INTRINSIC
Pfam:Helicase_RecD 281 488 1.3e-68 PFAM
Pfam:GNAT_acetyltr_2 528 753 7e-103 PFAM
Pfam:tRNA_bind_2 771 892 3.6e-46 PFAM
low complexity region 999 1024 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000140895
AA Change: K88E

PolyPhen 2 Score 0.022 (Sensitivity: 0.95; Specificity: 0.81)
SMART Domains Protein: ENSMUSP00000115072
Gene: ENSMUSG00000027185
AA Change: K88E

DomainStartEndE-ValueType
Pfam:DUF1726 107 186 1.2e-39 PFAM
Predicted Effect probably benign
Transcript: ENSMUST00000148798
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.6%
  • 20x: 98.6%
Validation Efficiency
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is an RNA cytidine acetyltransferase involved in histone acetylation, tRNA acetylation, the biosynthesis of 18S rRNA, and the enhancement of nuclear architecture and chromatin organization. [provided by RefSeq, Oct 2016]
Allele List at MGI
Other mutations in this stock
Total: 93 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4930550C14Rik A T 9: 53,334,317 (GRCm39) M187L possibly damaging Het
9930012K11Rik T C 14: 70,394,686 (GRCm39) E156G possibly damaging Het
Acad9 C T 3: 36,130,139 (GRCm39) A194V probably damaging Het
Agps T A 2: 75,683,128 (GRCm39) V151E probably benign Het
Ak9 A T 10: 41,283,367 (GRCm39) I1273L Het
Akr1c19 T A 13: 4,296,818 (GRCm39) L288Q probably damaging Het
Carmil1 T G 13: 24,197,377 (GRCm39) D1353A probably damaging Het
Ccz1 T A 5: 143,949,897 (GRCm39) I43F probably damaging Het
Cep70 G A 9: 99,157,638 (GRCm39) C179Y probably damaging Het
Comt A T 16: 18,229,440 (GRCm39) L196H probably damaging Het
Cspg5 A T 9: 110,076,023 (GRCm39) D253V probably damaging Het
Dars2 A G 1: 160,874,378 (GRCm39) V437A possibly damaging Het
Dcaf5 A G 12: 80,395,164 (GRCm39) I335T probably damaging Het
Ddn T C 15: 98,703,906 (GRCm39) K462R possibly damaging Het
Dscaml1 T C 9: 45,654,044 (GRCm39) probably null Het
Eef1ece2 T C 16: 20,451,341 (GRCm39) S325P probably benign Het
Ethe1 A G 7: 24,307,377 (GRCm39) Y197C probably damaging Het
Evc A T 5: 37,479,527 (GRCm39) L269* probably null Het
Fam161a T C 11: 22,970,001 (GRCm39) S60P possibly damaging Het
Fam20b A G 1: 156,509,012 (GRCm39) V400A probably benign Het
Fam53b T A 7: 132,361,390 (GRCm39) S213C possibly damaging Het
Flot2 A G 11: 77,945,612 (GRCm39) I45V probably benign Het
Gemin4 A C 11: 76,103,579 (GRCm39) L394R probably damaging Het
Glis2 T G 16: 4,429,182 (GRCm39) S128R possibly damaging Het
Gm3696 A G 14: 18,435,009 (GRCm39) Y92H probably damaging Het
Gpbp1l1 T C 4: 116,447,442 (GRCm39) V374A probably benign Het
Grm1 T C 10: 10,565,440 (GRCm39) N956S probably benign Het
Hbb-bh1 T C 7: 103,492,238 (GRCm39) E27G probably damaging Het
Hmcn1 A T 1: 150,458,088 (GRCm39) C5233S probably damaging Het
Hmgcr C T 13: 96,803,105 (GRCm39) C30Y probably damaging Het
Hoxb6 A G 11: 96,183,651 (GRCm39) probably benign Het
Igf2 T C 7: 142,209,555 (GRCm39) Q35R possibly damaging Het
Ighv1-4 C T 12: 114,450,941 (GRCm39) V56I probably benign Het
Kif13a C T 13: 46,905,931 (GRCm39) V671M possibly damaging Het
Lmtk2 C T 5: 144,111,178 (GRCm39) Q633* probably null Het
Mesd T C 7: 83,544,957 (GRCm39) Y136H probably damaging Het
Mga T A 2: 119,795,269 (GRCm39) S2984R possibly damaging Het
Mkrn3 T C 7: 62,068,675 (GRCm39) N372S probably benign Het
Mtpap A G 18: 4,387,068 (GRCm39) I373V probably benign Het
Mycbp2 G A 14: 103,358,027 (GRCm39) T4589M probably damaging Het
Myh2 A G 11: 67,079,195 (GRCm39) Q921R probably benign Het
Myom1 A G 17: 71,352,544 (GRCm39) D324G possibly damaging Het
Ncapd3 A G 9: 26,981,254 (GRCm39) R915G probably damaging Het
Nek4 T C 14: 30,679,249 (GRCm39) Y190H probably damaging Het
Nfasc A C 1: 132,529,790 (GRCm39) Y797D probably damaging Het
Ngp A G 9: 110,249,978 (GRCm39) D92G probably benign Het
Nos2 A C 11: 78,820,680 (GRCm39) H95P probably damaging Het
Nr3c1 ACGTC ACGTCGTC 18: 39,619,513 (GRCm39) probably benign Het
Or10ag59 C T 2: 87,405,863 (GRCm39) T145I probably benign Het
Or5bw2 C A 7: 6,573,715 (GRCm39) H242N probably damaging Het
Or5p73 T C 7: 108,064,642 (GRCm39) I37T possibly damaging Het
Or5t18 A T 2: 86,636,967 (GRCm39) H125Q possibly damaging Het
Otogl T A 10: 107,606,471 (GRCm39) D2154V probably benign Het
Pdss1 T A 2: 22,825,653 (GRCm39) probably null Het
Pex5 A T 6: 124,375,022 (GRCm39) L609* probably null Het
Pglyrp4 C A 3: 90,640,281 (GRCm39) A177D probably damaging Het
Phactr4 A G 4: 132,104,489 (GRCm39) probably null Het
Phf8-ps T C 17: 33,284,501 (GRCm39) D767G probably benign Het
Pik3cd G C 4: 149,744,171 (GRCm39) N193K probably benign Het
Prr36 TACCTCTTC T 8: 4,265,163 (GRCm39) probably benign Het
Prss38 A T 11: 59,266,384 (GRCm39) W25R probably benign Het
Prss8 T A 7: 127,526,056 (GRCm39) Q189L probably damaging Het
Psd T A 19: 46,303,240 (GRCm39) D713V probably damaging Het
Rad51ap2 C T 12: 11,507,692 (GRCm39) T538I probably benign Het
Rarres1 T C 3: 67,422,517 (GRCm39) T78A probably benign Het
Rbl2 G T 8: 91,828,922 (GRCm39) G651* probably null Het
Rev3l A T 10: 39,699,601 (GRCm39) Q1366L probably damaging Het
Rundc1 T C 11: 101,320,413 (GRCm39) S215P probably benign Het
Sanbr A T 11: 23,572,479 (GRCm39) C130S probably benign Het
Scarf2 G A 16: 17,620,837 (GRCm39) W168* probably null Het
Sh2d7 A G 9: 54,448,186 (GRCm39) D69G possibly damaging Het
Slc26a4 A T 12: 31,579,527 (GRCm39) Y578* probably null Het
Slc2a9 A T 5: 38,610,538 (GRCm39) L87Q probably damaging Het
Slc39a10 A T 1: 46,849,230 (GRCm39) H795Q probably damaging Het
Spata13 C T 14: 60,993,871 (GRCm39) R1108W probably damaging Het
Sqle T C 15: 59,187,901 (GRCm39) S70P probably benign Het
Syncrip A T 9: 88,346,716 (GRCm39) F263I probably damaging Het
Synj2 T C 17: 6,088,220 (GRCm39) S1424P possibly damaging Het
Tax1bp3 A T 11: 73,071,941 (GRCm39) T89S possibly damaging Het
Tcaim G A 9: 122,648,092 (GRCm39) probably null Het
Tcp10c T C 17: 13,582,438 (GRCm39) I240T possibly damaging Het
Ttll8 G T 15: 88,801,442 (GRCm39) N415K probably benign Het
Tut7 T C 13: 59,969,463 (GRCm39) E144G probably benign Het
Ugcg T C 4: 59,217,111 (GRCm39) S212P possibly damaging Het
Vmn2r32 T C 7: 7,482,807 (GRCm39) K56E probably benign Het
Vmn2r55 T C 7: 12,386,000 (GRCm39) E660G probably damaging Het
Vmn2r7 T C 3: 64,598,301 (GRCm39) N752S probably benign Het
Vps54 T A 11: 21,225,005 (GRCm39) M167K probably benign Het
Vwa2 A C 19: 56,897,791 (GRCm39) M699L probably benign Het
Wdr59 A G 8: 112,192,494 (GRCm39) V689A Het
Whamm T G 7: 81,235,995 (GRCm39) N399K probably damaging Het
Zfp760 A G 17: 21,941,760 (GRCm39) K312E probably benign Het
Zkscan3 C A 13: 21,578,983 (GRCm39) V171L probably benign Het
Other mutations in Nat10
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00570:Nat10 APN 2 103,556,109 (GRCm39) critical splice acceptor site probably null
IGL01062:Nat10 APN 2 103,573,393 (GRCm39) missense probably damaging 1.00
IGL01524:Nat10 APN 2 103,588,102 (GRCm39) missense probably damaging 1.00
IGL02553:Nat10 APN 2 103,583,013 (GRCm39) missense probably damaging 1.00
IGL03040:Nat10 APN 2 103,587,610 (GRCm39) splice site probably benign
diana UTSW 2 103,556,052 (GRCm39) missense probably benign 0.00
Trimmer UTSW 2 103,584,495 (GRCm39) missense probably null 1.00
R0106:Nat10 UTSW 2 103,587,550 (GRCm39) missense probably damaging 1.00
R0106:Nat10 UTSW 2 103,587,550 (GRCm39) missense probably damaging 1.00
R0268:Nat10 UTSW 2 103,558,262 (GRCm39) splice site probably benign
R0422:Nat10 UTSW 2 103,557,074 (GRCm39) nonsense probably null
R0423:Nat10 UTSW 2 103,578,572 (GRCm39) missense probably damaging 0.98
R0788:Nat10 UTSW 2 103,573,460 (GRCm39) missense probably damaging 1.00
R0946:Nat10 UTSW 2 103,561,719 (GRCm39) missense probably damaging 0.99
R1353:Nat10 UTSW 2 103,584,418 (GRCm39) missense possibly damaging 0.95
R2141:Nat10 UTSW 2 103,561,648 (GRCm39) splice site probably null
R2142:Nat10 UTSW 2 103,561,648 (GRCm39) splice site probably null
R2192:Nat10 UTSW 2 103,556,522 (GRCm39) missense probably benign 0.00
R3904:Nat10 UTSW 2 103,556,592 (GRCm39) splice site probably benign
R4183:Nat10 UTSW 2 103,570,158 (GRCm39) missense probably damaging 1.00
R4496:Nat10 UTSW 2 103,588,084 (GRCm39) missense probably damaging 1.00
R4578:Nat10 UTSW 2 103,584,417 (GRCm39) missense probably damaging 1.00
R4589:Nat10 UTSW 2 103,584,415 (GRCm39) missense probably damaging 1.00
R4639:Nat10 UTSW 2 103,565,234 (GRCm39) missense probably benign 0.00
R4679:Nat10 UTSW 2 103,562,515 (GRCm39) missense probably damaging 1.00
R4711:Nat10 UTSW 2 103,578,612 (GRCm39) nonsense probably null
R5089:Nat10 UTSW 2 103,587,488 (GRCm39) unclassified probably benign
R5103:Nat10 UTSW 2 103,587,605 (GRCm39) missense probably damaging 0.97
R5108:Nat10 UTSW 2 103,562,548 (GRCm39) missense probably damaging 0.97
R5134:Nat10 UTSW 2 103,573,638 (GRCm39) missense probably benign 0.29
R5823:Nat10 UTSW 2 103,560,612 (GRCm39) missense probably damaging 1.00
R5893:Nat10 UTSW 2 103,552,184 (GRCm39) unclassified probably benign
R6135:Nat10 UTSW 2 103,573,661 (GRCm39) missense probably damaging 1.00
R6455:Nat10 UTSW 2 103,570,231 (GRCm39) missense possibly damaging 0.69
R6592:Nat10 UTSW 2 103,584,495 (GRCm39) missense probably null 1.00
R6956:Nat10 UTSW 2 103,564,757 (GRCm39) missense probably benign 0.01
R7036:Nat10 UTSW 2 103,584,453 (GRCm39) missense probably benign 0.00
R7063:Nat10 UTSW 2 103,578,422 (GRCm39) missense probably benign 0.01
R7172:Nat10 UTSW 2 103,563,314 (GRCm39) missense probably damaging 1.00
R7226:Nat10 UTSW 2 103,557,098 (GRCm39) missense probably benign 0.01
R7448:Nat10 UTSW 2 103,578,390 (GRCm39) missense probably damaging 0.99
R7470:Nat10 UTSW 2 103,565,226 (GRCm39) missense probably benign 0.00
R7639:Nat10 UTSW 2 103,573,435 (GRCm39) missense probably damaging 1.00
R7640:Nat10 UTSW 2 103,573,435 (GRCm39) missense probably damaging 1.00
R7641:Nat10 UTSW 2 103,573,435 (GRCm39) missense probably damaging 1.00
R7642:Nat10 UTSW 2 103,557,131 (GRCm39) missense possibly damaging 0.94
R7766:Nat10 UTSW 2 103,556,052 (GRCm39) missense probably benign 0.00
R7787:Nat10 UTSW 2 103,552,208 (GRCm39) missense unknown
R7910:Nat10 UTSW 2 103,555,490 (GRCm39) missense probably benign 0.26
R8506:Nat10 UTSW 2 103,562,582 (GRCm39) missense probably benign 0.12
R8774:Nat10 UTSW 2 103,561,752 (GRCm39) missense probably damaging 0.99
R8774-TAIL:Nat10 UTSW 2 103,561,752 (GRCm39) missense probably damaging 0.99
R8922:Nat10 UTSW 2 103,582,938 (GRCm39) missense probably damaging 1.00
R9283:Nat10 UTSW 2 103,556,092 (GRCm39) nonsense probably null
R9344:Nat10 UTSW 2 103,573,460 (GRCm39) missense probably damaging 1.00
R9516:Nat10 UTSW 2 103,563,364 (GRCm39) missense probably damaging 1.00
R9647:Nat10 UTSW 2 103,578,538 (GRCm39) missense probably benign
R9696:Nat10 UTSW 2 103,556,040 (GRCm39) missense possibly damaging 0.67
X0024:Nat10 UTSW 2 103,558,226 (GRCm39) missense possibly damaging 0.49
Predicted Primers PCR Primer
(F):5'- TGCTTCCAAGTGTCTGCTG -3'
(R):5'- AGACTCAGGTTGCCATGCTG -3'

Sequencing Primer
(F):5'- AAGTGTCTGCTGCCCTCACTG -3'
(R):5'- CTTTCCTTAGTCCTTAAAGGGAAGG -3'
Posted On 2019-06-26