Mutagenetix > Incidental Mutation

Incidental Mutation 'R6992:Serpina3k'

543924

Institutional Source

Beutler Lab

Gene Symbol

Serpina3k

Ensembl Gene

ENSMUSG00000058207

Gene Name

serine (or cysteine) peptidase inhibitor, clade A, member 3K

Synonyms

Spi-2, alpha-1 antiproteinase, MMSpi2, 1300001I07Rik, RP54, contrapsin, Spi2, MMCM2, D12Rp54

MMRRC Submission

045098-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.061) question?

Stock #

R6992 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

104304745-104311998 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 104307366 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Aspartic acid to Glutamic Acid at position 199 (D199E)

Ref Sequence

ENSEMBL: ENSMUSP00000042095 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000043058] [ENSMUST00000101078]

AlphaFold

no structure available at present

Predicted Effect

probably benign
Transcript: ENSMUST00000043058
AA Change: D199E

PolyPhen 2 Score 0.002 (Sensitivity: 0.99; Specificity: 0.30)

SMART Domains

Protein: ENSMUSP00000042095
Gene: ENSMUSG00000058207
AA Change: D199E

Domain	Start	End	E-Value	Type
signal peptide	1	21	N/A	INTRINSIC
SERPIN	57	417	4.77e-195	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000101078

SMART Domains

Protein: ENSMUSP00000098639
Gene: ENSMUSG00000079012

Domain	Start	End	E-Value	Type
signal peptide	1	20	N/A	INTRINSIC
SERPIN	56	417	3.12e-199	SMART

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.7%
20x: 98.9%

Validation Efficiency

100% (64/64)

Allele List at MGI

Other mutations in this stock

Total: 63 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4921539E11Rik	C	T	4: 103,099,990 (GRCm39)	S171N	possibly damaging	Het
6030468B19Rik	T	G	11: 117,688,594 (GRCm39)	M1R	probably null	Het
A730049H05Rik	T	C	6: 92,804,975 (GRCm39)		probably benign	Het
AC125199.3	G	T	16: 88,608,915 (GRCm39)	H52Q	possibly damaging	Het
Adam34	A	T	8: 44,105,642 (GRCm39)	M1K	probably null	Het
Adgrf5	T	C	17: 43,763,214 (GRCm39)		probably null	Het
Antxr2	T	C	5: 98,108,564 (GRCm39)	T316A	probably benign	Het
Cc2d1a	A	T	8: 84,861,542 (GRCm39)	V714D	probably damaging	Het
Cd96	A	G	16: 45,870,087 (GRCm39)	S461P	possibly damaging	Het
Cdc16	C	A	8: 13,809,188 (GRCm39)	A51E	probably benign	Het
Chd4	T	A	6: 125,091,339 (GRCm39)	D1243E	probably benign	Het
Cntf	A	T	19: 12,742,697 (GRCm39)	I21N	probably damaging	Het
Col11a2	C	T	17: 34,266,118 (GRCm39)	A282V	probably benign	Het
Col14a1	T	A	15: 55,274,958 (GRCm39)		probably null	Het
Cyp2b9	T	C	7: 25,900,564 (GRCm39)	Y401H	probably benign	Het
Dlgap4	A	G	2: 156,590,860 (GRCm39)		probably null	Het
Fancd2	T	C	6: 113,547,979 (GRCm39)		probably null	Het
Fcgbpl1	T	A	7: 27,839,608 (GRCm39)	F474I	probably benign	Het
Frem1	A	G	4: 82,858,599 (GRCm39)	V1622A	possibly damaging	Het
Golm1	ACTTCTTCT	ACTTCT	13: 59,797,390 (GRCm39)		probably benign	Het
Gstm4	A	G	3: 107,951,981 (GRCm39)	M3T	possibly damaging	Het
Hdac10	T	C	15: 89,009,534 (GRCm39)	D466G	probably benign	Het
Hook2	A	G	8: 85,729,185 (GRCm39)	E625G	probably damaging	Het
Hspbp1	G	C	7: 4,667,714 (GRCm39)	P260A	probably benign	Het
Igdcc3	C	A	9: 65,088,853 (GRCm39)	Q411K	probably damaging	Het
Il18rap	G	A	1: 40,581,195 (GRCm39)	E356K	probably benign	Het
Inpp4a	A	T	1: 37,428,772 (GRCm39)	M699L	probably damaging	Het
Klhdc1	A	G	12: 69,300,531 (GRCm39)	H157R	probably damaging	Het
Klhl6	G	T	16: 19,772,337 (GRCm39)	T336N	probably damaging	Het
Marchf7	T	C	2: 60,059,428 (GRCm39)		probably null	Het
Mast4	C	T	13: 102,941,155 (GRCm39)	V301I	probably damaging	Het
Mlh3	T	A	12: 85,282,494 (GRCm39)	N1412Y	probably damaging	Het
Mrps27	A	G	13: 99,541,522 (GRCm39)	M209V	probably benign	Het
Mtor	A	T	4: 148,548,932 (GRCm39)	T572S	probably benign	Het
Neurog1	T	C	13: 56,399,363 (GRCm39)	K128R	probably damaging	Het
Or10g6	T	A	9: 39,933,896 (GRCm39)	L69*	probably null	Het
Or2b4	T	A	17: 38,116,754 (GRCm39)	N239K	probably damaging	Het
Or5b122	A	G	19: 13,562,811 (GRCm39)	I48V	possibly damaging	Het
Pcdhgb1	A	G	18: 37,814,652 (GRCm39)	K381R	probably benign	Het
Pdzd2	T	C	15: 12,457,945 (GRCm39)	D306G	probably damaging	Het
Plekha5	C	T	6: 140,489,634 (GRCm39)	T237I	probably damaging	Het
Plscr1l1	T	C	9: 92,236,725 (GRCm39)	M128T	probably benign	Het
Pole	A	T	5: 110,480,365 (GRCm39)	I103F	probably damaging	Het
Ppfia2	A	T	10: 106,310,715 (GRCm39)	Q74L	possibly damaging	Het
Ppm1d	T	C	11: 85,223,178 (GRCm39)	F261S	probably damaging	Het
Psg21	A	T	7: 18,388,668 (GRCm39)		probably null	Het
Ptprg	T	A	14: 11,962,602 (GRCm38)	F133L	probably damaging	Het
Rom1	G	A	19: 8,906,569 (GRCm39)		probably benign	Het
Rtn3	A	G	19: 7,412,489 (GRCm39)	F762L	probably damaging	Het
Sec23ip	T	C	7: 128,367,164 (GRCm39)	S600P	probably benign	Het
Sema4b	T	A	7: 79,869,900 (GRCm39)	I396N	probably damaging	Het
Slc19a1	A	G	10: 76,885,540 (GRCm39)	D480G	possibly damaging	Het
Slc8b1	G	A	5: 120,665,880 (GRCm39)	V404M	probably damaging	Het
Slco1a4	T	C	6: 141,765,330 (GRCm39)	D304G	probably benign	Het
Smpdl3b	G	T	4: 132,472,452 (GRCm39)	A107D	possibly damaging	Het
Tesk1	A	G	4: 43,447,006 (GRCm39)	T465A	probably benign	Het
Tmem245	A	G	4: 56,937,940 (GRCm39)	F203L	probably benign	Het
Tnip1	T	A	11: 54,809,542 (GRCm39)	I442F	probably benign	Het
Txnip	A	G	3: 96,466,439 (GRCm39)	K127R	possibly damaging	Het
Usp32	A	C	11: 84,922,914 (GRCm39)	L172R	probably damaging	Het
Vmn2r66	A	G	7: 84,654,436 (GRCm39)	S508P	possibly damaging	Het
Vwa5b2	T	A	16: 20,416,952 (GRCm39)	Y550N	probably damaging	Het
Wdr81	G	A	11: 75,342,612 (GRCm39)	A885V	probably benign	Het

Other mutations in Serpina3k

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01331:Serpina3k	APN	12	104,309,369 (GRCm39)	missense	probably benign	0.36
IGL01402:Serpina3k	APN	12	104,306,882 (GRCm39)	missense	probably benign	0.00
IGL01404:Serpina3k	APN	12	104,306,882 (GRCm39)	missense	probably benign	0.00
IGL01958:Serpina3k	APN	12	104,307,316 (GRCm39)	missense	probably damaging	1.00
IGL02031:Serpina3k	APN	12	104,311,525 (GRCm39)	missense	probably benign	0.08
IGL02055:Serpina3k	APN	12	104,307,295 (GRCm39)	nonsense	probably null
IGL02981:Serpina3k	APN	12	104,307,250 (GRCm39)	missense	probably benign	0.02
IGL03269:Serpina3k	APN	12	104,306,780 (GRCm39)	missense	possibly damaging	0.83
R1076:Serpina3k	UTSW	12	104,307,253 (GRCm39)	missense	probably benign	0.00
R2360:Serpina3k	UTSW	12	104,307,166 (GRCm39)	nonsense	probably null
R3816:Serpina3k	UTSW	12	104,307,221 (GRCm39)	missense	probably benign	0.08
R4577:Serpina3k	UTSW	12	104,310,451 (GRCm39)	missense	possibly damaging	0.94
R4656:Serpina3k	UTSW	12	104,311,532 (GRCm39)	missense	probably damaging	1.00
R4732:Serpina3k	UTSW	12	104,307,119 (GRCm39)	missense	probably damaging	1.00
R4733:Serpina3k	UTSW	12	104,307,119 (GRCm39)	missense	probably damaging	1.00
R4916:Serpina3k	UTSW	12	104,309,269 (GRCm39)	missense	probably damaging	1.00
R4999:Serpina3k	UTSW	12	104,307,305 (GRCm39)	missense	probably damaging	1.00
R5053:Serpina3k	UTSW	12	104,309,473 (GRCm39)	critical splice donor site	probably null
R6300:Serpina3k	UTSW	12	104,306,981 (GRCm39)	missense	probably damaging	1.00
R6343:Serpina3k	UTSW	12	104,311,562 (GRCm39)	missense	probably benign
R6851:Serpina3k	UTSW	12	104,311,625 (GRCm39)	missense	probably benign	0.00
R6858:Serpina3k	UTSW	12	104,311,504 (GRCm39)	missense	possibly damaging	0.85
R6872:Serpina3k	UTSW	12	104,310,519 (GRCm39)	missense	probably benign	0.25
R7025:Serpina3k	UTSW	12	104,307,401 (GRCm39)	missense	probably benign	0.01
R7050:Serpina3k	UTSW	12	104,307,403 (GRCm39)	missense	possibly damaging	0.96
R7238:Serpina3k	UTSW	12	104,309,367 (GRCm39)	missense	probably damaging	1.00
R7240:Serpina3k	UTSW	12	104,306,861 (GRCm39)	missense	probably benign	0.05
R7469:Serpina3k	UTSW	12	104,311,594 (GRCm39)	missense	not run
R8837:Serpina3k	UTSW	12	104,309,292 (GRCm39)	missense	probably benign	0.00
R9025:Serpina3k	UTSW	12	104,307,230 (GRCm39)	missense	probably damaging	1.00
R9497:Serpina3k	UTSW	12	104,309,430 (GRCm39)	missense	probably benign	0.01
X0019:Serpina3k	UTSW	12	104,306,834 (GRCm39)	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- GAAAAGGACCTGCAGATCCTGG -3'
(R):5'- TTGAGCATGCACCAGGAAATAC -3'

Sequencing Primer
(F):5'- TGCAGATCCTGGCAGAATTC -3'
(R):5'- GGAAATACAACCATTGTCTAGAGAC -3'

Posted On

2019-05-13