Incidental Mutation 'R6821:Cmtm1'
ID 540722
Institutional Source Beutler Lab
Gene Symbol Cmtm1
Ensembl Gene ENSMUSG00000110430
Gene Name CKLF-like MARVEL transmembrane domain containing 1
Synonyms CKLFH1, CHLFH1a, Cklfsf1
MMRRC Submission 044933-MU
Accession Numbers
Essential gene? Possibly non essential (E-score: 0.271) question?
Stock # R6821 (G1)
Quality Score 214.458
Status Not validated
Chromosome 8
Chromosomal Location 105020174-105036777 bp(-) (GRCm39)
Type of Mutation frame shift
DNA Base Change (assembly) TCCGGGTACTGAAGGTCCCTGGCTGGCTGGTGTCCCGGGTACTGAAGGTCCCTGGCTGGCTGGTGTCCCGGGTACTGAAGGTCCCTGGCTGGCTGGTGTCCCGGGTACTGAAGGTCCCTGGCTGGCTGGTGTCCCGGGTACTGAAGGTCCCTGG to TCCGGGTACTGAAGGTCCCTGGCTGGCTGGTGTCCCGGGTACTGAAGGTCCCTGGCTGGCTGGTGTCCCGGGTACTGAAGGTCCCTGGCTGGCTGGTGTCCCGGGTACTGAAGGTCCCTGG at 105036334 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000132828 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000159039] [ENSMUST00000160596] [ENSMUST00000162616] [ENSMUST00000164175]
AlphaFold B7ZP21
Predicted Effect probably benign
Transcript: ENSMUST00000159039
SMART Domains Protein: ENSMUSP00000124855
Gene: ENSMUSG00000110430

DomainStartEndE-ValueType
low complexity region 7 27 N/A INTRINSIC
internal_repeat_1 33 70 7.45e-12 PROSPERO
internal_repeat_2 34 74 9.92e-7 PROSPERO
internal_repeat_1 66 103 7.45e-12 PROSPERO
internal_repeat_2 122 162 9.92e-7 PROSPERO
transmembrane domain 190 212 N/A INTRINSIC
transmembrane domain 227 246 N/A INTRINSIC
transmembrane domain 253 275 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000160596
SMART Domains Protein: ENSMUSP00000124656
Gene: ENSMUSG00000110430

DomainStartEndE-ValueType
low complexity region 7 27 N/A INTRINSIC
internal_repeat_1 33 70 1.42e-11 PROSPERO
internal_repeat_2 34 74 1.79e-6 PROSPERO
internal_repeat_1 66 103 1.42e-11 PROSPERO
internal_repeat_2 122 162 1.79e-6 PROSPERO
transmembrane domain 262 284 N/A INTRINSIC
transmembrane domain 289 311 N/A INTRINSIC
transmembrane domain 315 334 N/A INTRINSIC
transmembrane domain 341 363 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000162616
SMART Domains Protein: ENSMUSP00000124800
Gene: ENSMUSG00000031876

DomainStartEndE-ValueType
low complexity region 7 27 N/A INTRINSIC
internal_repeat_1 33 70 1.42e-11 PROSPERO
internal_repeat_2 34 74 1.79e-6 PROSPERO
internal_repeat_1 66 103 1.42e-11 PROSPERO
internal_repeat_2 122 162 1.79e-6 PROSPERO
transmembrane domain 262 284 N/A INTRINSIC
transmembrane domain 289 311 N/A INTRINSIC
transmembrane domain 315 334 N/A INTRINSIC
transmembrane domain 341 363 N/A INTRINSIC
Predicted Effect probably null
Transcript: ENSMUST00000164175
SMART Domains Protein: ENSMUSP00000132828
Gene: ENSMUSG00000110430

DomainStartEndE-ValueType
low complexity region 7 27 N/A INTRINSIC
internal_repeat_1 34 71 1.23e-5 PROSPERO
internal_repeat_1 100 137 1.23e-5 PROSPERO
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.6%
  • 20x: 98.7%
Validation Efficiency 97% (63/65)
Allele List at MGI
Other mutations in this stock
Total: 64 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Acsl5 T C 19: 55,277,268 (GRCm39) I417T probably benign Het
Adamts12 A C 15: 11,152,134 (GRCm39) K208T probably benign Het
Adamts8 T A 9: 30,867,922 (GRCm39) L582Q probably benign Het
Aim2 C G 1: 173,291,546 (GRCm39) T317R probably damaging Het
Ano9 A T 7: 140,687,169 (GRCm39) F357I possibly damaging Het
Aox3 T C 1: 58,189,547 (GRCm39) V416A probably benign Het
Arhgap21 A C 2: 20,853,659 (GRCm39) F1901C probably benign Het
Atp8b2 A T 3: 89,855,480 (GRCm39) F506I probably damaging Het
Atp9b A T 18: 80,890,463 (GRCm39) L292H probably damaging Het
C2cd5 A G 6: 142,963,712 (GRCm39) V891A probably damaging Het
Ccnt2 T C 1: 127,731,072 (GRCm39) S650P probably damaging Het
Cdhr3 T A 12: 33,085,044 (GRCm39) N791Y probably damaging Het
D630003M21Rik A C 2: 158,046,694 (GRCm39) L761R probably damaging Het
Draxin G T 4: 148,200,148 (GRCm39) Q101K possibly damaging Het
Dtx3l A T 16: 35,753,430 (GRCm39) L392Q probably damaging Het
Eif3d A G 15: 77,845,855 (GRCm39) S389P possibly damaging Het
Enpp5 G A 17: 44,396,155 (GRCm39) G356S probably damaging Het
Epha4 T C 1: 77,359,582 (GRCm39) N757S possibly damaging Het
Fam228b T C 12: 4,813,083 (GRCm39) I96V probably benign Het
Gars1 A G 6: 55,056,323 (GRCm39) E728G probably benign Het
Gldn T C 9: 54,246,054 (GRCm39) M535T probably benign Het
Gm47985 A G 1: 151,058,787 (GRCm39) T143A possibly damaging Het
Gpr6 T C 10: 40,947,004 (GRCm39) T193A probably benign Het
Grik5 C T 7: 24,745,780 (GRCm39) R431Q possibly damaging Het
Hecw1 T A 13: 14,438,719 (GRCm39) Y1315F probably damaging Het
Hs3st2 A G 7: 121,099,745 (GRCm39) D197G possibly damaging Het
Igsf9 T C 1: 172,312,060 (GRCm39) I2T probably benign Het
Ints9 A G 14: 65,274,907 (GRCm39) E621G probably benign Het
Itm2b G A 14: 73,603,907 (GRCm39) P47S probably benign Het
Map10 A G 8: 126,397,138 (GRCm39) K177R probably benign Het
Mdh2 T C 5: 135,818,525 (GRCm39) F260S possibly damaging Het
Mtmr11 A G 3: 96,077,723 (GRCm39) T573A probably benign Het
Mycbp2 A T 14: 103,376,845 (GRCm39) I3812N probably damaging Het
Myo15a A G 11: 60,415,301 (GRCm39) N3403S probably damaging Het
Nvl G A 1: 180,954,535 (GRCm39) Q343* probably null Het
Ocstamp A T 2: 165,239,842 (GRCm39) S115T probably benign Het
Or51ai2 A T 7: 103,586,793 (GRCm39) I69F probably benign Het
Otoa G A 7: 120,692,070 (GRCm39) probably null Het
Pcdhb20 A T 18: 37,639,175 (GRCm39) N567I probably damaging Het
Pgm5 A T 19: 24,839,011 (GRCm39) V48E possibly damaging Het
Phlpp1 T A 1: 106,314,174 (GRCm39) S1182R probably damaging Het
Pik3r4 T A 9: 105,527,805 (GRCm39) L386Q probably damaging Het
Pop1 A G 15: 34,508,785 (GRCm39) K287E possibly damaging Het
Pramel23 A T 4: 143,425,874 (GRCm39) L23* probably null Het
Rad54b A G 4: 11,612,777 (GRCm39) D803G probably damaging Het
Rbm26 G A 14: 105,354,400 (GRCm39) probably benign Het
Rspry1 C T 8: 95,362,059 (GRCm39) Q113* probably null Het
Siah2 T A 3: 58,599,191 (GRCm39) S16C probably benign Het
Sirpa C A 2: 129,472,017 (GRCm39) D481E probably damaging Het
Slc38a7 A C 8: 96,571,548 (GRCm39) D227E probably benign Het
Smc5 A G 19: 23,220,151 (GRCm39) V438A probably benign Het
Spast A G 17: 74,658,957 (GRCm39) E108G probably benign Het
Speg A G 1: 75,394,547 (GRCm39) E1752G possibly damaging Het
Tanc2 T G 11: 105,777,316 (GRCm39) probably null Het
Tgfbi T C 13: 56,773,950 (GRCm39) I243T possibly damaging Het
Tlr12 T C 4: 128,510,685 (GRCm39) S522G possibly damaging Het
Trav14-3 A G 14: 54,000,929 (GRCm39) I47V probably benign Het
Tsc22d4 T C 5: 137,760,906 (GRCm39) V109A possibly damaging Het
Ttl G A 2: 128,910,835 (GRCm39) R73H probably damaging Het
Usp34 C T 11: 23,317,491 (GRCm39) T850I possibly damaging Het
Vdac3 T C 8: 23,070,491 (GRCm39) Y140C probably damaging Het
Vmn2r120 T C 17: 57,843,659 (GRCm39) R62G probably benign Het
Vmn2r17 T A 5: 109,577,331 (GRCm39) Y461N probably damaging Het
Wt1 T A 2: 105,002,612 (GRCm39) F493I probably damaging Het
Other mutations in Cmtm1
AlleleSourceChrCoordTypePredicted EffectPPH Score
Senilicus UTSW 8 105,035,927 (GRCm39) missense possibly damaging 0.90
G1citation:Cmtm1 UTSW 8 105,036,334 (GRCm39) frame shift probably null
R2900:Cmtm1 UTSW 8 105,036,176 (GRCm39) missense possibly damaging 0.95
R4132:Cmtm1 UTSW 8 105,036,102 (GRCm39) small deletion probably benign
R4615:Cmtm1 UTSW 8 105,036,102 (GRCm39) small deletion probably benign
R4723:Cmtm1 UTSW 8 105,020,307 (GRCm39) missense probably damaging 0.96
R5277:Cmtm1 UTSW 8 105,036,102 (GRCm39) small deletion probably benign
R5347:Cmtm1 UTSW 8 105,036,102 (GRCm39) small deletion probably benign
R5364:Cmtm1 UTSW 8 105,036,102 (GRCm39) small deletion probably benign
R5394:Cmtm1 UTSW 8 105,036,102 (GRCm39) small deletion probably benign
R5403:Cmtm1 UTSW 8 105,036,102 (GRCm39) small deletion probably benign
R5611:Cmtm1 UTSW 8 105,036,102 (GRCm39) small deletion probably benign
R5715:Cmtm1 UTSW 8 105,036,102 (GRCm39) small deletion probably benign
R5731:Cmtm1 UTSW 8 105,036,102 (GRCm39) small deletion probably benign
R5773:Cmtm1 UTSW 8 105,031,808 (GRCm39) missense probably damaging 1.00
R6017:Cmtm1 UTSW 8 105,037,583 (GRCm39) unclassified probably benign
R6207:Cmtm1 UTSW 8 105,036,102 (GRCm39) small deletion probably benign
R6313:Cmtm1 UTSW 8 105,031,795 (GRCm39) missense possibly damaging 0.81
R6528:Cmtm1 UTSW 8 105,035,927 (GRCm39) missense possibly damaging 0.90
R6817:Cmtm1 UTSW 8 105,036,102 (GRCm39) small deletion probably benign
R6822:Cmtm1 UTSW 8 105,036,334 (GRCm39) frame shift probably null
R7028:Cmtm1 UTSW 8 105,036,102 (GRCm39) small deletion probably benign
R7128:Cmtm1 UTSW 8 105,036,102 (GRCm39) small deletion probably benign
R7132:Cmtm1 UTSW 8 105,036,102 (GRCm39) small deletion probably benign
R7816:Cmtm1 UTSW 8 105,036,102 (GRCm39) small deletion probably benign
R7819:Cmtm1 UTSW 8 105,036,334 (GRCm39) frame shift probably null
R7841:Cmtm1 UTSW 8 105,036,108 (GRCm39) missense possibly damaging 0.55
R7963:Cmtm1 UTSW 8 105,036,102 (GRCm39) small deletion probably benign
R7988:Cmtm1 UTSW 8 105,036,774 (GRCm39) unclassified probably benign
R8130:Cmtm1 UTSW 8 105,036,088 (GRCm39) missense unknown
R8152:Cmtm1 UTSW 8 105,036,573 (GRCm39) missense possibly damaging 0.83
R8439:Cmtm1 UTSW 8 105,036,102 (GRCm39) small deletion probably benign
R8459:Cmtm1 UTSW 8 105,036,143 (GRCm39) missense possibly damaging 0.95
R8683:Cmtm1 UTSW 8 105,036,102 (GRCm39) small deletion probably benign
R8843:Cmtm1 UTSW 8 105,036,334 (GRCm39) frame shift probably null
R8860:Cmtm1 UTSW 8 105,036,334 (GRCm39) frame shift probably null
R8871:Cmtm1 UTSW 8 105,036,334 (GRCm39) frame shift probably null
R9093:Cmtm1 UTSW 8 105,036,334 (GRCm39) frame shift probably null
R9098:Cmtm1 UTSW 8 105,036,334 (GRCm39) frame shift probably null
R9528:Cmtm1 UTSW 8 105,036,102 (GRCm39) small deletion probably benign
RF041:Cmtm1 UTSW 8 105,036,102 (GRCm39) small deletion probably benign
Predicted Primers PCR Primer
(F):5'- TGTGGCACGTACTGAAGGTC -3'
(R):5'- CGCTTAACTTTACGACCTCGAG -3'

Sequencing Primer
(F):5'- ACGTACTGAAGGTCGCTGACTG -3'
(R):5'- ACCTTCGGATTCACAGGCGTATG -3'
Posted On 2018-11-16