Mutagenetix > Incidental Mutation

Incidental Mutation 'R6860:Ppp1r9b'

535457

Institutional Source

Beutler Lab

Gene Symbol

Ppp1r9b

Ensembl Gene

ENSMUSG00000038976

Gene Name

protein phosphatase 1, regulatory subunit 9B

Synonyms

neurabin II, Spn, SPL, spinophilin

MMRRC Submission

045025-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R6860 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

94882038-94897724 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

G to A at 94882974 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Alanine to Threonine at position 201 (A201T)

Ref Sequence

ENSEMBL: ENSMUSP00000041732 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000038696] [ENSMUST00000107748]

AlphaFold

Q6R891

Predicted Effect

probably benign
Transcript: ENSMUST00000038696
AA Change: A201T

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)

SMART Domains

Protein: ENSMUSP00000041732
Gene: ENSMUSG00000038976
AA Change: A201T

Domain	Start	End	E-Value	Type
low complexity region	64	83	N/A	INTRINSIC
low complexity region	126	142	N/A	INTRINSIC
low complexity region	226	237	N/A	INTRINSIC
low complexity region	253	260	N/A	INTRINSIC
low complexity region	281	317	N/A	INTRINSIC
low complexity region	332	361	N/A	INTRINSIC
low complexity region	399	430	N/A	INTRINSIC
Blast:PDZ	431	458	4e-10	BLAST
PDZ	504	584	7.03e-19	SMART
low complexity region	600	612	N/A	INTRINSIC
Blast:PDZ	731	768	2e-10	BLAST

Predicted Effect

probably benign
Transcript: ENSMUST00000107748

SMART Domains

Protein: ENSMUSP00000103377
Gene: ENSMUSG00000038976

Domain	Start	End	E-Value	Type
PDZ	80	160	7.03e-19	SMART
low complexity region	176	188	N/A	INTRINSIC
Blast:PDZ	307	344	4e-10	BLAST

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000151771

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.5%
20x: 98.3%

Validation Efficiency

100% (86/86)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a scaffold protein that functions as a regulatory subunit of protein phosphatase 1a. Expression of this gene is particularly high in dendritic spines, suggesting that the encoded protein may play a role in receiving signals from the central nervous system. The encoded protein has putative tumor suppressor function and decreased expression has been observed in tumors. [provided by RefSeq, Feb 2014]
PHENOTYPE: Homozygotes for a targeted null mutation exhibit abnormal glutamatergic synaptic transmission, reduced long-term depression, resistance to kainate-induced seizures, impaired taste aversion learning, and increased dendritic spine density. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 89 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4933427D14Rik	T	C	11: 72,080,412 (GRCm39)	E418G	probably damaging	Het
9930012K11Rik	C	A	14: 70,395,071 (GRCm39)	V28L	possibly damaging	Het
Abtb2	C	T	2: 103,539,770 (GRCm39)	R712*	probably null	Het
Acvr1c	C	T	2: 58,177,717 (GRCm39)	G171S	probably damaging	Het
Ahctf1	G	T	1: 179,580,853 (GRCm39)	A1783E	probably benign	Het
Anapc4	A	T	5: 53,006,170 (GRCm39)	Q149L	probably damaging	Het
Ankrd27	T	C	7: 35,327,952 (GRCm39)	V824A	possibly damaging	Het
Ankrd31	G	C	13: 96,968,094 (GRCm39)	C577S	probably benign	Het
Apol7c	T	C	15: 77,410,274 (GRCm39)	N224S	probably benign	Het
Arl14	A	T	3: 69,130,029 (GRCm39)	T59S	probably benign	Het
Astn1	T	A	1: 158,440,042 (GRCm39)	I870K	probably damaging	Het
B4galt1	A	T	4: 40,807,796 (GRCm39)	V335E	probably benign	Het
C2cd3	C	T	7: 100,039,448 (GRCm39)	P216S	probably benign	Het
Cchcr1	C	A	17: 35,840,015 (GRCm39)	N711K	possibly damaging	Het
Chd2	A	G	7: 73,147,558 (GRCm39)	F467L	possibly damaging	Het
Cntn6	A	T	6: 104,838,907 (GRCm39)	E987V	possibly damaging	Het
Col11a2	T	A	17: 34,272,572 (GRCm39)	L286H	probably damaging	Het
Cwc22	C	T	2: 77,759,792 (GRCm39)	R85Q	possibly damaging	Het
Cyp7a1	A	C	4: 6,272,587 (GRCm39)	F209V	probably damaging	Het
Dmtn	T	C	14: 70,852,322 (GRCm39)	T189A	possibly damaging	Het
Dnhd1	C	G	7: 105,327,473 (GRCm39)	N777K	probably benign	Het
Dusp16	A	T	6: 134,702,842 (GRCm39)	C216*	probably null	Het
Fan1	T	A	7: 64,022,234 (GRCm39)	N340Y	probably damaging	Het
Fbn1	T	C	2: 125,170,078 (GRCm39)	N1993S	probably damaging	Het
Fbxw22	A	G	9: 109,213,030 (GRCm39)	S306P	probably benign	Het
Ferd3l	T	C	12: 33,978,651 (GRCm39)	S55P	probably benign	Het
Fpr-rs3	A	G	17: 20,844,560 (GRCm39)	S194P	possibly damaging	Het
Gm19965	G	A	1: 116,748,609 (GRCm39)	D97N	probably benign	Het
Gtpbp2	A	G	17: 46,478,914 (GRCm39)		probably benign	Het
H3c7	G	T	13: 23,728,760 (GRCm39)	V36L	probably benign	Het
Hcn3	A	C	3: 89,067,152 (GRCm39)	I72S	possibly damaging	Het
Hk3	T	A	13: 55,162,278 (GRCm39)	N109Y	probably damaging	Het
Iqub	T	C	6: 24,505,737 (GRCm39)	E57G	possibly damaging	Het
Kcnk3	T	A	5: 30,779,397 (GRCm39)	M149K	possibly damaging	Het
Kcp	C	T	6: 29,505,719 (GRCm39)	G51D	probably benign	Het
Kif26a	C	A	12: 112,113,263 (GRCm39)	A53D	probably damaging	Het
Lifr	T	A	15: 7,202,418 (GRCm39)	I353K	probably benign	Het
Llph	A	T	10: 120,067,189 (GRCm39)	N102I	probably damaging	Het
Lmo3	C	A	6: 138,393,566 (GRCm39)	R18L	possibly damaging	Het
Lrrc46	T	C	11: 96,926,371 (GRCm39)	E175G	probably benign	Het
Ltk	A	T	2: 119,585,075 (GRCm39)	C128*	probably null	Het
Map1b	T	C	13: 99,571,275 (GRCm39)	E482G	probably damaging	Het
Mapk8ip2	T	C	15: 89,344,655 (GRCm39)	V740A	probably damaging	Het
Miga2	T	C	2: 30,261,175 (GRCm39)	W157R	probably benign	Het
Mlip	A	G	9: 77,009,675 (GRCm39)	*837Q	probably null	Het
Mroh2a	G	T	1: 88,182,657 (GRCm39)	R1195L	possibly damaging	Het
Myl1	T	C	1: 66,984,217 (GRCm39)		probably benign	Het
Or1l4	T	C	2: 37,092,189 (GRCm39)	L312P	possibly damaging	Het
Or2a5	T	C	6: 42,873,750 (GRCm39)	Y122H	probably benign	Het
Or51ab3	A	G	7: 103,201,075 (GRCm39)	I28V	probably benign	Het
P3h3	A	T	6: 124,834,331 (GRCm39)	V107D	probably benign	Het
Papolb	A	T	5: 142,514,651 (GRCm39)	S331T	possibly damaging	Het
Pars2	T	G	4: 106,511,700 (GRCm39)	V494G	probably benign	Het
Pcdhb3	C	A	18: 37,434,763 (GRCm39)	T243K	probably benign	Het
Pde9a	T	A	17: 31,689,698 (GRCm39)	M415K	probably damaging	Het
Prl	A	G	13: 27,248,942 (GRCm39)	N197S	possibly damaging	Het
Prl2c1	T	A	13: 28,035,724 (GRCm39)	M32K	probably benign	Het
Prrt4	T	C	6: 29,170,737 (GRCm39)	S572G	possibly damaging	Het
Psd	T	A	19: 46,310,858 (GRCm39)	D397V	probably damaging	Het
Psme2b	A	T	11: 48,836,307 (GRCm39)	Y213*	probably null	Het
Ptcd3	T	A	6: 71,874,094 (GRCm39)		probably null	Het
Ptprk	T	G	10: 28,210,480 (GRCm39)	F167L	probably damaging	Het
Rfx7	T	C	9: 72,524,226 (GRCm39)	V472A	probably damaging	Het
Sanbr	A	G	11: 23,575,100 (GRCm39)	L58P	probably damaging	Het
Scnn1g	T	C	7: 121,339,576 (GRCm39)	L125S	probably damaging	Het
Sec16a	T	C	2: 26,320,124 (GRCm39)	Y1438C	probably damaging	Het
Serinc3	C	T	2: 163,476,366 (GRCm39)	S155N	probably benign	Het
Slc3a2	A	T	19: 8,690,996 (GRCm39)	V78E	probably damaging	Het
Slc44a4	T	A	17: 35,140,044 (GRCm39)	L23Q	probably damaging	Het
Slco5a1	C	T	1: 12,951,420 (GRCm39)		probably benign	Het
Slit1	A	G	19: 41,605,154 (GRCm39)	M899T	probably benign	Het
Sorl1	A	G	9: 41,933,688 (GRCm39)	I1094T	probably benign	Het
Spag9	T	A	11: 93,972,196 (GRCm39)	L258Q	probably benign	Het
Strip1	T	C	3: 107,526,252 (GRCm39)	E488G	possibly damaging	Het
Stx18	G	A	5: 38,262,235 (GRCm39)	D30N	possibly damaging	Het
Sync	T	C	4: 129,181,583 (GRCm39)		probably null	Het
Syncrip	A	G	9: 88,358,849 (GRCm39)	V220A	probably damaging	Het
Tagln2	T	C	1: 172,333,476 (GRCm39)	I110T	probably benign	Het
Taok1	T	C	11: 77,432,627 (GRCm39)	T729A	probably benign	Het
Tgfbrap1	C	T	1: 43,106,759 (GRCm39)	V75I	possibly damaging	Het
Tnfrsf21	A	G	17: 43,327,957 (GRCm39)	T24A	probably benign	Het
Tnxb	T	A	17: 34,932,131 (GRCm39)	D2221E	probably damaging	Het
Triml1	A	G	8: 43,583,603 (GRCm39)	S333P	probably damaging	Het
Trp53bp1	C	A	2: 121,029,594 (GRCm39)	R1862L	probably damaging	Het
Tsc22d1	T	G	14: 76,655,732 (GRCm39)	I737S	possibly damaging	Het
U2af2	A	T	7: 5,082,273 (GRCm39)	K462N	possibly damaging	Het
Ubap2	A	C	4: 41,233,631 (GRCm39)	N86K	probably damaging	Het
Uso1	A	G	5: 92,343,207 (GRCm39)	K764E	probably benign	Het
Vmn1r192	T	A	13: 22,372,122 (GRCm39)	M33L	probably benign	Het

Other mutations in Ppp1r9b

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01714:Ppp1r9b	APN	11	94,896,180 (GRCm39)	missense	probably damaging	0.96
IGL02261:Ppp1r9b	APN	11	94,892,936 (GRCm39)	missense	probably damaging	1.00
R0068:Ppp1r9b	UTSW	11	94,892,046 (GRCm39)	missense	probably damaging	1.00
R0719:Ppp1r9b	UTSW	11	94,892,661 (GRCm39)	splice site	probably null
R1185:Ppp1r9b	UTSW	11	94,892,812 (GRCm39)	missense	possibly damaging	0.95
R1185:Ppp1r9b	UTSW	11	94,892,812 (GRCm39)	missense	possibly damaging	0.95
R1185:Ppp1r9b	UTSW	11	94,892,812 (GRCm39)	missense	possibly damaging	0.95
R1385:Ppp1r9b	UTSW	11	94,883,037 (GRCm39)	missense	probably benign	0.06
R1639:Ppp1r9b	UTSW	11	94,887,436 (GRCm39)	missense	probably damaging	1.00
R1642:Ppp1r9b	UTSW	11	94,892,150 (GRCm39)	synonymous	silent
R2000:Ppp1r9b	UTSW	11	94,887,446 (GRCm39)	missense	probably damaging	1.00
R2162:Ppp1r9b	UTSW	11	94,888,877 (GRCm39)	missense	probably damaging	1.00
R2332:Ppp1r9b	UTSW	11	94,887,435 (GRCm39)	missense	probably damaging	0.96
R3815:Ppp1r9b	UTSW	11	94,883,359 (GRCm39)	missense	probably damaging	1.00
R4426:Ppp1r9b	UTSW	11	94,892,150 (GRCm39)	missense	possibly damaging	0.93
R4427:Ppp1r9b	UTSW	11	94,892,150 (GRCm39)	missense	possibly damaging	0.93
R5121:Ppp1r9b	UTSW	11	94,887,479 (GRCm39)	missense	probably damaging	0.99
R5205:Ppp1r9b	UTSW	11	94,892,124 (GRCm39)	missense	probably benign	0.11
R5348:Ppp1r9b	UTSW	11	94,887,438 (GRCm39)	nonsense	probably null
R5397:Ppp1r9b	UTSW	11	94,892,936 (GRCm39)	missense	probably damaging	1.00
R5399:Ppp1r9b	UTSW	11	94,882,974 (GRCm39)	missense	probably benign
R6188:Ppp1r9b	UTSW	11	94,882,662 (GRCm39)	missense	probably damaging	0.99
R7308:Ppp1r9b	UTSW	11	94,895,397 (GRCm39)	missense	possibly damaging	0.86
R7357:Ppp1r9b	UTSW	11	94,895,424 (GRCm39)	missense	probably benign	0.00
R7479:Ppp1r9b	UTSW	11	94,882,858 (GRCm39)	missense	possibly damaging	0.85
R7587:Ppp1r9b	UTSW	11	94,892,766 (GRCm39)	missense	possibly damaging	0.65
R7651:Ppp1r9b	UTSW	11	94,892,768 (GRCm39)	missense	probably benign	0.03
R7871:Ppp1r9b	UTSW	11	94,892,735 (GRCm39)	missense	probably damaging	1.00
R8692:Ppp1r9b	UTSW	11	94,891,077 (GRCm39)	missense	probably damaging	1.00
R8964:Ppp1r9b	UTSW	11	94,882,705 (GRCm39)	missense	probably damaging	0.99
R9009:Ppp1r9b	UTSW	11	94,887,467 (GRCm39)	missense	probably benign	0.15
R9059:Ppp1r9b	UTSW	11	94,883,254 (GRCm39)	missense	probably benign	0.28

Predicted Primers

PCR Primer
(F):5'- GAGAACGTAGACCACAGTGC -3'
(R):5'- TTCTCCAAGGCTGCATGGAC -3'

Sequencing Primer
(F):5'- TGAGCCGCTTCGACTCCAAG -3'
(R):5'- ACCGGCTTGATCTTGCG -3'

Posted On

2018-09-12