Mutagenetix > Incidental Mutation

Incidental Mutation 'R6860:Lmo3'

535435

Institutional Source

Beutler Lab

Gene Symbol

Lmo3

Ensembl Gene

ENSMUSG00000030226

Gene Name

LIM domain only 3

Synonyms

Rbtn-3, Rbtn3

MMRRC Submission

045025-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.749) question?

Stock #

R6860 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

138339916-138558966 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

C to A at 138393566 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Arginine to Leucine at position 18 (R18L)

Ref Sequence

ENSEMBL: ENSMUSP00000124722 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000160050] [ENSMUST00000161450] [ENSMUST00000162185] [ENSMUST00000162772] [ENSMUST00000162932] [ENSMUST00000163024] [ENSMUST00000163065] [ENSMUST00000203435]

AlphaFold

Q8BZL8

Predicted Effect

possibly damaging
Transcript: ENSMUST00000160050
AA Change: R18L

PolyPhen 2 Score 0.829 (Sensitivity: 0.84; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000124722
Gene: ENSMUSG00000030226
AA Change: R18L

Domain	Start	End	E-Value	Type
LIM	12	59	7.82e-4	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000161450
AA Change: R18L

PolyPhen 2 Score 0.006 (Sensitivity: 0.97; Specificity: 0.75)

SMART Domains

Protein: ENSMUSP00000124862
Gene: ENSMUSG00000030226
AA Change: R18L

Domain	Start	End	E-Value	Type
LIM	12	66	8.69e-15	SMART
LIM	76	130	3.12e-16	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000162185
AA Change: R18L

PolyPhen 2 Score 0.006 (Sensitivity: 0.97; Specificity: 0.75)

SMART Domains

Protein: ENSMUSP00000124105
Gene: ENSMUSG00000030226
AA Change: R18L

Domain	Start	End	E-Value	Type
LIM	12	66	8.69e-15	SMART
LIM	76	108	6.02e-2	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000162772
AA Change: R18L

PolyPhen 2 Score 0.006 (Sensitivity: 0.97; Specificity: 0.75)

SMART Domains

Protein: ENSMUSP00000125335
Gene: ENSMUSG00000030226
AA Change: R18L

Domain	Start	End	E-Value	Type
LIM	12	66	8.69e-15	SMART
LIM	76	130	3.12e-16	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000162932
AA Change: R18L

PolyPhen 2 Score 0.006 (Sensitivity: 0.97; Specificity: 0.75)

SMART Domains

Protein: ENSMUSP00000124514
Gene: ENSMUSG00000030226
AA Change: R18L

Domain	Start	End	E-Value	Type
LIM	12	66	8.69e-15	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000163024
AA Change: R18L

PolyPhen 2 Score 0.006 (Sensitivity: 0.97; Specificity: 0.75)

SMART Domains

Protein: ENSMUSP00000125589
Gene: ENSMUSG00000030226
AA Change: R18L

Domain	Start	End	E-Value	Type
LIM	12	66	8.69e-15	SMART
LIM	76	130	3.12e-16	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000163065
AA Change: R29L

PolyPhen 2 Score 0.014 (Sensitivity: 0.96; Specificity: 0.79)

SMART Domains

Protein: ENSMUSP00000124762
Gene: ENSMUSG00000030226
AA Change: R29L

Domain	Start	End	E-Value	Type
LIM	23	77	8.69e-15	SMART
LIM	87	141	3.12e-16	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000203435
AA Change: R18L

PolyPhen 2 Score 0.006 (Sensitivity: 0.97; Specificity: 0.75)

SMART Domains

Protein: ENSMUSP00000145048
Gene: ENSMUSG00000030226
AA Change: R18L

Domain	Start	End	E-Value	Type
LIM	12	66	8.69e-15	SMART
LIM	76	130	3.12e-16	SMART

Coding Region Coverage

1x: 100.0%
3x: 99.9%
10x: 99.5%
20x: 98.3%

Validation Efficiency

100% (86/86)

MGI Phenotype

PHENOTYPE: Homozygous mutant mice show no overt phenotype. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 89 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4933427D14Rik	T	C	11: 72,080,412 (GRCm39)	E418G	probably damaging	Het
9930012K11Rik	C	A	14: 70,395,071 (GRCm39)	V28L	possibly damaging	Het
Abtb2	C	T	2: 103,539,770 (GRCm39)	R712*	probably null	Het
Acvr1c	C	T	2: 58,177,717 (GRCm39)	G171S	probably damaging	Het
Ahctf1	G	T	1: 179,580,853 (GRCm39)	A1783E	probably benign	Het
Anapc4	A	T	5: 53,006,170 (GRCm39)	Q149L	probably damaging	Het
Ankrd27	T	C	7: 35,327,952 (GRCm39)	V824A	possibly damaging	Het
Ankrd31	G	C	13: 96,968,094 (GRCm39)	C577S	probably benign	Het
Apol7c	T	C	15: 77,410,274 (GRCm39)	N224S	probably benign	Het
Arl14	A	T	3: 69,130,029 (GRCm39)	T59S	probably benign	Het
Astn1	T	A	1: 158,440,042 (GRCm39)	I870K	probably damaging	Het
B4galt1	A	T	4: 40,807,796 (GRCm39)	V335E	probably benign	Het
C2cd3	C	T	7: 100,039,448 (GRCm39)	P216S	probably benign	Het
Cchcr1	C	A	17: 35,840,015 (GRCm39)	N711K	possibly damaging	Het
Chd2	A	G	7: 73,147,558 (GRCm39)	F467L	possibly damaging	Het
Cntn6	A	T	6: 104,838,907 (GRCm39)	E987V	possibly damaging	Het
Col11a2	T	A	17: 34,272,572 (GRCm39)	L286H	probably damaging	Het
Cwc22	C	T	2: 77,759,792 (GRCm39)	R85Q	possibly damaging	Het
Cyp7a1	A	C	4: 6,272,587 (GRCm39)	F209V	probably damaging	Het
Dmtn	T	C	14: 70,852,322 (GRCm39)	T189A	possibly damaging	Het
Dnhd1	C	G	7: 105,327,473 (GRCm39)	N777K	probably benign	Het
Dusp16	A	T	6: 134,702,842 (GRCm39)	C216*	probably null	Het
Fan1	T	A	7: 64,022,234 (GRCm39)	N340Y	probably damaging	Het
Fbn1	T	C	2: 125,170,078 (GRCm39)	N1993S	probably damaging	Het
Fbxw22	A	G	9: 109,213,030 (GRCm39)	S306P	probably benign	Het
Ferd3l	T	C	12: 33,978,651 (GRCm39)	S55P	probably benign	Het
Fpr-rs3	A	G	17: 20,844,560 (GRCm39)	S194P	possibly damaging	Het
Gm19965	G	A	1: 116,748,609 (GRCm39)	D97N	probably benign	Het
Gtpbp2	A	G	17: 46,478,914 (GRCm39)		probably benign	Het
H3c7	G	T	13: 23,728,760 (GRCm39)	V36L	probably benign	Het
Hcn3	A	C	3: 89,067,152 (GRCm39)	I72S	possibly damaging	Het
Hk3	T	A	13: 55,162,278 (GRCm39)	N109Y	probably damaging	Het
Iqub	T	C	6: 24,505,737 (GRCm39)	E57G	possibly damaging	Het
Kcnk3	T	A	5: 30,779,397 (GRCm39)	M149K	possibly damaging	Het
Kcp	C	T	6: 29,505,719 (GRCm39)	G51D	probably benign	Het
Kif26a	C	A	12: 112,113,263 (GRCm39)	A53D	probably damaging	Het
Lifr	T	A	15: 7,202,418 (GRCm39)	I353K	probably benign	Het
Llph	A	T	10: 120,067,189 (GRCm39)	N102I	probably damaging	Het
Lrrc46	T	C	11: 96,926,371 (GRCm39)	E175G	probably benign	Het
Ltk	A	T	2: 119,585,075 (GRCm39)	C128*	probably null	Het
Map1b	T	C	13: 99,571,275 (GRCm39)	E482G	probably damaging	Het
Mapk8ip2	T	C	15: 89,344,655 (GRCm39)	V740A	probably damaging	Het
Miga2	T	C	2: 30,261,175 (GRCm39)	W157R	probably benign	Het
Mlip	A	G	9: 77,009,675 (GRCm39)	*837Q	probably null	Het
Mroh2a	G	T	1: 88,182,657 (GRCm39)	R1195L	possibly damaging	Het
Myl1	T	C	1: 66,984,217 (GRCm39)		probably benign	Het
Or1l4	T	C	2: 37,092,189 (GRCm39)	L312P	possibly damaging	Het
Or2a5	T	C	6: 42,873,750 (GRCm39)	Y122H	probably benign	Het
Or51ab3	A	G	7: 103,201,075 (GRCm39)	I28V	probably benign	Het
P3h3	A	T	6: 124,834,331 (GRCm39)	V107D	probably benign	Het
Papolb	A	T	5: 142,514,651 (GRCm39)	S331T	possibly damaging	Het
Pars2	T	G	4: 106,511,700 (GRCm39)	V494G	probably benign	Het
Pcdhb3	C	A	18: 37,434,763 (GRCm39)	T243K	probably benign	Het
Pde9a	T	A	17: 31,689,698 (GRCm39)	M415K	probably damaging	Het
Ppp1r9b	G	A	11: 94,882,974 (GRCm39)	A201T	probably benign	Het
Prl	A	G	13: 27,248,942 (GRCm39)	N197S	possibly damaging	Het
Prl2c1	T	A	13: 28,035,724 (GRCm39)	M32K	probably benign	Het
Prrt4	T	C	6: 29,170,737 (GRCm39)	S572G	possibly damaging	Het
Psd	T	A	19: 46,310,858 (GRCm39)	D397V	probably damaging	Het
Psme2b	A	T	11: 48,836,307 (GRCm39)	Y213*	probably null	Het
Ptcd3	T	A	6: 71,874,094 (GRCm39)		probably null	Het
Ptprk	T	G	10: 28,210,480 (GRCm39)	F167L	probably damaging	Het
Rfx7	T	C	9: 72,524,226 (GRCm39)	V472A	probably damaging	Het
Sanbr	A	G	11: 23,575,100 (GRCm39)	L58P	probably damaging	Het
Scnn1g	T	C	7: 121,339,576 (GRCm39)	L125S	probably damaging	Het
Sec16a	T	C	2: 26,320,124 (GRCm39)	Y1438C	probably damaging	Het
Serinc3	C	T	2: 163,476,366 (GRCm39)	S155N	probably benign	Het
Slc3a2	A	T	19: 8,690,996 (GRCm39)	V78E	probably damaging	Het
Slc44a4	T	A	17: 35,140,044 (GRCm39)	L23Q	probably damaging	Het
Slco5a1	C	T	1: 12,951,420 (GRCm39)		probably benign	Het
Slit1	A	G	19: 41,605,154 (GRCm39)	M899T	probably benign	Het
Sorl1	A	G	9: 41,933,688 (GRCm39)	I1094T	probably benign	Het
Spag9	T	A	11: 93,972,196 (GRCm39)	L258Q	probably benign	Het
Strip1	T	C	3: 107,526,252 (GRCm39)	E488G	possibly damaging	Het
Stx18	G	A	5: 38,262,235 (GRCm39)	D30N	possibly damaging	Het
Sync	T	C	4: 129,181,583 (GRCm39)		probably null	Het
Syncrip	A	G	9: 88,358,849 (GRCm39)	V220A	probably damaging	Het
Tagln2	T	C	1: 172,333,476 (GRCm39)	I110T	probably benign	Het
Taok1	T	C	11: 77,432,627 (GRCm39)	T729A	probably benign	Het
Tgfbrap1	C	T	1: 43,106,759 (GRCm39)	V75I	possibly damaging	Het
Tnfrsf21	A	G	17: 43,327,957 (GRCm39)	T24A	probably benign	Het
Tnxb	T	A	17: 34,932,131 (GRCm39)	D2221E	probably damaging	Het
Triml1	A	G	8: 43,583,603 (GRCm39)	S333P	probably damaging	Het
Trp53bp1	C	A	2: 121,029,594 (GRCm39)	R1862L	probably damaging	Het
Tsc22d1	T	G	14: 76,655,732 (GRCm39)	I737S	possibly damaging	Het
U2af2	A	T	7: 5,082,273 (GRCm39)	K462N	possibly damaging	Het
Ubap2	A	C	4: 41,233,631 (GRCm39)	N86K	probably damaging	Het
Uso1	A	G	5: 92,343,207 (GRCm39)	K764E	probably benign	Het
Vmn1r192	T	A	13: 22,372,122 (GRCm39)	M33L	probably benign	Het

Other mutations in Lmo3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01768:Lmo3	APN	6	138,393,495 (GRCm39)	missense	probably damaging	1.00
IGL03196:Lmo3	APN	6	138,342,993 (GRCm39)	missense	probably benign	0.05
R0319:Lmo3	UTSW	6	138,354,309 (GRCm39)	missense	probably damaging	1.00
R2119:Lmo3	UTSW	6	138,393,492 (GRCm39)	missense	probably damaging	1.00
R7318:Lmo3	UTSW	6	138,398,363 (GRCm39)	intron	probably benign
R7443:Lmo3	UTSW	6	138,354,220 (GRCm39)	missense	probably damaging	1.00
R7483:Lmo3	UTSW	6	138,393,500 (GRCm39)	missense	probably damaging	1.00
R9367:Lmo3	UTSW	6	138,342,958 (GRCm39)	nonsense	probably null
R9500:Lmo3	UTSW	6	138,393,621 (GRCm39)	missense
X0027:Lmo3	UTSW	6	138,393,482 (GRCm39)	missense	probably damaging	1.00
Z1177:Lmo3	UTSW	6	138,393,498 (GRCm39)	missense	probably benign	0.10
Z1177:Lmo3	UTSW	6	138,393,494 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- GGAAGGGCCAATTCCTACCTCA -3'
(R):5'- CATAGCTCGATTATAGTACATCCATCA -3'

Sequencing Primer
(F):5'- GGGCCAATTCCTACCTCAGATAGTC -3'
(R):5'- AAGAAGGAAGGAAGGAAGGATAG -3'

Posted On

2018-09-12