Incidental Mutation 'R6852:Or5m9'
ID 535000
Institutional Source Beutler Lab
Gene Symbol Or5m9
Ensembl Gene ENSMUSG00000102091
Gene Name olfactory receptor family 5 subfamily M member 9
Synonyms Olfr1533-ps1, MOR245-14P, MOR227-8P, Olfr1034, GA_x6K02T2Q125-47521463-47522395, MOR227-8P
MMRRC Submission 045023-MU
Accession Numbers
Essential gene? Possibly non essential (E-score: 0.390) question?
Stock # R6852 (G1)
Quality Score 225.009
Status Not validated
Chromosome 2
Chromosomal Location 85876788-85877810 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to T at 85876948 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Isoleucine to Phenylalanine at position 41 (I41F)
Ref Sequence ENSEMBL: ENSMUSP00000150150 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000213496] [ENSMUST00000213865] [ENSMUST00000214546] [ENSMUST00000215682] [ENSMUST00000218397]
AlphaFold A0A1L1ST14
Predicted Effect probably benign
Transcript: ENSMUST00000213496
AA Change: I41F

PolyPhen 2 Score 0.282 (Sensitivity: 0.91; Specificity: 0.88)
Predicted Effect probably benign
Transcript: ENSMUST00000213865
Predicted Effect probably benign
Transcript: ENSMUST00000214546
Predicted Effect probably benign
Transcript: ENSMUST00000215682
Predicted Effect probably benign
Transcript: ENSMUST00000218397
Coding Region Coverage
  • 1x: 100.0%
  • 3x: 99.9%
  • 10x: 99.6%
  • 20x: 98.7%
Validation Efficiency
MGI Phenotype FUNCTION: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
Allele List at MGI
Other mutations in this stock
Total: 72 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
1110002E22Rik C T 3: 137,770,930 (GRCm39) Q40* probably null Het
1700034E13Rik T C 18: 52,796,705 (GRCm39) V81A probably damaging Het
A630089N07Rik A G 16: 97,866,855 (GRCm39) I369T probably benign Het
Aatk T A 11: 119,901,294 (GRCm39) Q977L probably benign Het
Abca4 A T 3: 121,928,844 (GRCm39) Q144H probably damaging Het
Ampd3 T C 7: 110,401,753 (GRCm39) F416L probably benign Het
Anks1b A G 10: 90,096,516 (GRCm39) E425G probably damaging Het
Atm A G 9: 53,393,730 (GRCm39) S1737P possibly damaging Het
Bsph1 T A 7: 13,204,255 (GRCm39) probably null Het
Cabyr C T 18: 12,887,154 (GRCm39) P262S probably benign Het
Cdc14a G A 3: 116,122,325 (GRCm39) P214L possibly damaging Het
Cep128 C A 12: 91,333,116 (GRCm39) probably null Het
Cfh T A 1: 140,075,487 (GRCm39) R250S probably damaging Het
Ddx39a T C 8: 84,449,646 (GRCm39) I417T probably benign Het
Dgka T A 10: 128,558,408 (GRCm39) K548M probably damaging Het
Efr3a G A 15: 65,701,679 (GRCm39) V198I probably benign Het
Elapor1 T C 3: 108,389,654 (GRCm39) E203G probably damaging Het
Epg5 C T 18: 78,056,106 (GRCm39) T1760I probably damaging Het
Fat1 T C 8: 45,488,635 (GRCm39) V3472A possibly damaging Het
Fbxo48 T A 11: 16,903,402 (GRCm39) N9K probably benign Het
Fcgbpl1 T A 7: 27,846,560 (GRCm39) I1084N probably damaging Het
Fer1l6 A T 15: 58,466,727 (GRCm39) H833L probably damaging Het
Foxn1 G T 11: 78,251,786 (GRCm39) Q482K probably benign Het
Fstl5 A G 3: 76,615,162 (GRCm39) D741G probably damaging Het
Gmip C T 8: 70,270,641 (GRCm39) Q55* probably null Het
H2-T5 T C 17: 36,478,965 (GRCm39) N95D possibly damaging Het
Hapln2 G A 3: 87,929,958 (GRCm39) T306M possibly damaging Het
Kat6a T A 8: 23,428,676 (GRCm39) S1344T probably benign Het
Kctd1 C T 18: 15,119,401 (GRCm39) D705N possibly damaging Het
Lhx9 ACC ACCC 1: 138,769,544 (GRCm39) probably null Het
Micall2 G T 5: 139,701,548 (GRCm39) A482D possibly damaging Het
Mindy3 T A 2: 12,424,063 (GRCm39) M1L possibly damaging Het
Mtdh A G 15: 34,136,867 (GRCm39) E352G probably damaging Het
Muc5ac G A 7: 141,370,644 (GRCm39) V3219I probably benign Het
Myh4 A G 11: 67,143,794 (GRCm39) probably null Het
Ncor1 A G 11: 62,234,071 (GRCm39) I377T probably damaging Het
Oog4 C A 4: 143,165,679 (GRCm39) C156F possibly damaging Het
Pcyt1a T C 16: 32,288,938 (GRCm39) S260P probably damaging Het
Phf3 A T 1: 30,843,711 (GRCm39) F1749L probably damaging Het
Prickle2 T C 6: 92,353,525 (GRCm39) D647G probably benign Het
Raver2 T C 4: 100,990,787 (GRCm39) S387P probably benign Het
Relch T C 1: 105,681,320 (GRCm39) L1184P probably damaging Het
Rgs19 A G 2: 181,330,941 (GRCm39) S231P possibly damaging Het
Rpl8 G T 15: 76,790,149 (GRCm39) R198L probably benign Het
Sacs T A 14: 61,416,737 (GRCm39) S77T possibly damaging Het
Samd14 G A 11: 94,912,280 (GRCm39) G219D probably damaging Het
Sec16a C T 2: 26,331,431 (GRCm39) V195M probably damaging Het
Sesn2 C T 4: 132,221,113 (GRCm39) V453I possibly damaging Het
Slc46a3 A T 5: 147,822,970 (GRCm39) C291S probably damaging Het
Smarcal1 A G 1: 72,630,332 (GRCm39) T129A possibly damaging Het
Sorl1 T A 9: 41,935,694 (GRCm39) R1041W possibly damaging Het
Sptlc3 T C 2: 139,408,506 (GRCm39) I207T probably benign Het
Srgap3 T C 6: 112,793,622 (GRCm39) D118G probably damaging Het
Tas2r117 T A 6: 132,779,892 (GRCm39) V10D probably benign Het
Tbcd A G 11: 121,500,206 (GRCm39) K1111E probably benign Het
Tor1aip1 A T 1: 155,911,566 (GRCm39) L139Q probably damaging Het
Trbv23 T C 6: 41,193,181 (GRCm39) V23A probably damaging Het
Ttll3 AAGTA AAGTATAGTA 6: 113,376,120 (GRCm39) probably null Het
Ttll3 GGCAAAG GGCAAAGCAAAG 6: 113,376,116 (GRCm39) probably null Het
Ttll3 CAAAGTAA CAAAGTAAAGTAA 6: 113,376,118 (GRCm39) probably null Het
Vmn1r42 T G 6: 89,821,769 (GRCm39) T267P possibly damaging Het
Vmn2r53 C A 7: 12,340,441 (GRCm39) V11F probably damaging Het
Vmn2r67 T C 7: 84,801,361 (GRCm39) M192V probably damaging Het
Vmn2r78 T C 7: 86,603,811 (GRCm39) V663A probably damaging Het
Zdhhc1 C T 8: 106,203,704 (GRCm39) G156S possibly damaging Het
Zfp318 AGAAG AGAAGAGGAAG 17: 46,723,464 (GRCm39) probably benign Het
Zfp318 GAAGAA GAAGAAAAAGAA 17: 46,723,459 (GRCm39) probably benign Het
Zfp318 AAGAAG AAGAAGTAGAAG 17: 46,723,460 (GRCm39) probably benign Het
Zfp560 A G 9: 20,259,339 (GRCm39) C508R probably damaging Het
Zfp654 G A 16: 64,606,961 (GRCm39) L414F probably damaging Het
Zfp872 A T 9: 22,111,355 (GRCm39) Y278F probably damaging Het
Zscan20 T C 4: 128,483,515 (GRCm39) S385G probably damaging Het
Other mutations in Or5m9
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01015:Or5m9 APN 2 85,876,996 (GRCm39) missense possibly damaging 0.55
IGL01066:Or5m9 APN 2 85,877,602 (GRCm39) missense probably damaging 0.97
IGL01326:Or5m9 APN 2 85,877,627 (GRCm39) missense probably damaging 0.96
IGL02862:Or5m9 APN 2 85,877,648 (GRCm39) missense probably benign 0.07
ANU74:Or5m9 UTSW 2 85,877,655 (GRCm39) nonsense probably null
PIT4651001:Or5m9 UTSW 2 85,876,862 (GRCm39) missense probably damaging 1.00
R0415:Or5m9 UTSW 2 85,877,399 (GRCm39) missense probably benign 0.00
R0492:Or5m9 UTSW 2 85,877,278 (GRCm39) missense possibly damaging 0.81
R0492:Or5m9 UTSW 2 85,876,931 (GRCm39) missense probably benign 0.00
R0517:Or5m9 UTSW 2 85,877,548 (GRCm39) missense probably damaging 0.99
R0519:Or5m9 UTSW 2 85,877,411 (GRCm39) missense probably benign
R0619:Or5m9 UTSW 2 85,877,655 (GRCm39) nonsense probably null
R1015:Or5m9 UTSW 2 85,877,426 (GRCm39) missense possibly damaging 0.49
R1592:Or5m9 UTSW 2 85,877,333 (GRCm39) missense probably benign 0.00
R1598:Or5m9 UTSW 2 85,877,657 (GRCm39) missense probably damaging 0.99
R2062:Or5m9 UTSW 2 85,877,299 (GRCm39) missense probably damaging 1.00
R4690:Or5m9 UTSW 2 85,877,242 (GRCm39) missense probably damaging 1.00
R5757:Or5m9 UTSW 2 85,876,910 (GRCm39) missense possibly damaging 0.93
R5991:Or5m9 UTSW 2 85,877,254 (GRCm39) missense probably benign 0.05
R6037:Or5m9 UTSW 2 85,876,928 (GRCm39) missense probably benign 0.00
R6037:Or5m9 UTSW 2 85,876,928 (GRCm39) missense probably benign 0.00
R6760:Or5m9 UTSW 2 85,877,358 (GRCm39) nonsense probably null
R9686:Or5m9 UTSW 2 85,877,335 (GRCm39) missense probably benign
S24628:Or5m9 UTSW 2 85,877,399 (GRCm39) missense probably benign 0.00
Predicted Primers PCR Primer
(F):5'- TGTGGCATGATCAAACACACC -3'
(R):5'- TAGCACTGTACCAAGCATCC -3'

Sequencing Primer
(F):5'- TGGCATGATCAAACACACCATTCTAC -3'
(R):5'- TACCAAGCATCCAACATAAGAAATTG -3'
Posted On 2018-09-12