Mutagenetix > Incidental Mutation

Incidental Mutation 'R6280:Agpat3'

507914

Institutional Source

Beutler Lab

Gene Symbol

Agpat3

Ensembl Gene

ENSMUSG00000001211

Gene Name

1-acylglycerol-3-phosphate O-acyltransferase 3

Synonyms

D10Jhu12e, LPAAT3

MMRRC Submission

044450-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.160) question?

Stock #

R6280 (G1)

Quality Score

225.009

Status

Validated

Chromosome

Chromosomal Location

78105012-78188323 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 78120872 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Phenylalanine to Serine at position 102 (F102S)

Ref Sequence

ENSEMBL: ENSMUSP00000132954 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000001240] [ENSMUST00000105387] [ENSMUST00000105388] [ENSMUST00000105389] [ENSMUST00000105390] [ENSMUST00000138035] [ENSMUST00000139282] [ENSMUST00000150828] [ENSMUST00000166360] [ENSMUST00000219932] [ENSMUST00000146899]

AlphaFold

Q9D517

Predicted Effect

probably damaging
Transcript: ENSMUST00000001240
AA Change: F102S

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000001240
Gene: ENSMUSG00000001211
AA Change: F102S

Domain	Start	End	E-Value	Type
transmembrane domain	15	37	N/A	INTRINSIC
PlsC	90	212	3.14e-21	SMART
transmembrane domain	308	330	N/A	INTRINSIC
transmembrane domain	335	357	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000105387
AA Change: F102S

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000101026
Gene: ENSMUSG00000001211
AA Change: F102S

Domain	Start	End	E-Value	Type
transmembrane domain	15	37	N/A	INTRINSIC
PlsC	90	212	3.14e-21	SMART
transmembrane domain	308	330	N/A	INTRINSIC
transmembrane domain	335	357	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000105388
AA Change: F102S

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000101027
Gene: ENSMUSG00000001211
AA Change: F102S

Domain	Start	End	E-Value	Type
transmembrane domain	15	37	N/A	INTRINSIC
PlsC	90	212	3.14e-21	SMART
transmembrane domain	308	330	N/A	INTRINSIC
transmembrane domain	335	357	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000105389
AA Change: F102S

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000101028
Gene: ENSMUSG00000001211
AA Change: F102S

Domain	Start	End	E-Value	Type
transmembrane domain	15	37	N/A	INTRINSIC
PlsC	90	212	3.14e-21	SMART
transmembrane domain	308	330	N/A	INTRINSIC
transmembrane domain	335	357	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000105390
AA Change: F102S

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000101029
Gene: ENSMUSG00000001211
AA Change: F102S

Domain	Start	End	E-Value	Type
transmembrane domain	15	37	N/A	INTRINSIC
PlsC	90	212	3.14e-21	SMART
transmembrane domain	308	330	N/A	INTRINSIC
transmembrane domain	335	357	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000138035

SMART Domains

Protein: ENSMUSP00000121052
Gene: ENSMUSG00000001211

Domain	Start	End	E-Value	Type
transmembrane domain	15	37	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000139282
AA Change: F102S

PolyPhen 2 Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)

SMART Domains

Protein: ENSMUSP00000119713
Gene: ENSMUSG00000001211
AA Change: F102S

Domain	Start	End	E-Value	Type
transmembrane domain	15	37	N/A	INTRINSIC
Pfam:Acyltransferase	72	144	3.1e-7	PFAM

Predicted Effect

probably damaging
Transcript: ENSMUST00000150828
AA Change: F102S

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000114885
Gene: ENSMUSG00000001211
AA Change: F102S

Domain	Start	End	E-Value	Type
transmembrane domain	15	37	N/A	INTRINSIC
Blast:PlsC	90	129	5e-20	BLAST

Predicted Effect

probably damaging
Transcript: ENSMUST00000166360
AA Change: F102S

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000132954
Gene: ENSMUSG00000001211
AA Change: F102S

Domain	Start	End	E-Value	Type
transmembrane domain	15	37	N/A	INTRINSIC
PlsC	90	212	3.14e-21	SMART
Pfam:Acyltransf_C	241	314	2.1e-29	PFAM
transmembrane domain	335	357	N/A	INTRINSIC

Predicted Effect

unknown
Transcript: ENSMUST00000219932
AA Change: S83P

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000219907

Predicted Effect

probably benign
Transcript: ENSMUST00000146899

SMART Domains

Protein: ENSMUSP00000114657
Gene: ENSMUSG00000001211

Domain	Start	End	E-Value	Type
transmembrane domain	15	37	N/A	INTRINSIC

Coding Region Coverage

1x: 99.9%
3x: 99.7%
10x: 98.5%
20x: 95.9%

Validation Efficiency

100% (75/75)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene is an acyltransferase that converts lysophosphatidic acid into phosphatidic acid, which is the second step in the de novo phospholipid biosynthetic pathway. The encoded protein may be an integral membrane protein. Two transcript variants encoding the same protein have been found for this gene. [provided by RefSeq, Jul 2008]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit male infertility with oligozoospermia, teratozoospermia. [provided by MGI curators]

Allele List at MGI

All alleles(14) : Targeted(2) Gene trapped(12)

Other mutations in this stock

Total: 76 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Abca12	C	T	1: 71,311,619 (GRCm39)	D1930N	probably benign	Het
Adam8	A	G	7: 139,564,720 (GRCm39)	L667S	probably damaging	Het
Adcy4	A	T	14: 56,016,500 (GRCm39)	I317N	probably damaging	Het
Apbb2	A	T	5: 66,522,325 (GRCm39)	W443R	probably damaging	Het
BC049715	T	A	6: 136,817,229 (GRCm39)	Y156*	probably null	Het
Bpifc	C	T	10: 85,813,576 (GRCm39)	V323I	probably benign	Het
Camp	T	G	9: 109,676,577 (GRCm39)	I149L	probably benign	Het
Cfap20dc	T	G	14: 8,473,414 (GRCm38)		probably null	Het
Cibar2	A	G	8: 120,898,858 (GRCm39)	I94T	possibly damaging	Het
Cnih1	A	G	14: 47,025,634 (GRCm39)		probably null	Het
Col18a1	A	T	10: 76,948,323 (GRCm39)		probably benign	Het
Dsg4	A	T	18: 20,599,724 (GRCm39)	D780V	probably damaging	Het
Dync1i1	G	A	6: 5,972,084 (GRCm39)	V442I	probably benign	Het
Fam83g	G	T	11: 61,594,008 (GRCm39)	S514I	probably benign	Het
Fbxo7	A	G	10: 85,864,969 (GRCm39)	N93D	probably benign	Het
Fgf20	G	T	8: 40,734,153 (GRCm39)	S76*	probably null	Het
Foxi1	A	G	11: 34,157,972 (GRCm39)	F18L	probably damaging	Het
Fxr1	G	A	3: 34,100,401 (GRCm39)		probably benign	Het
Gon4l	T	A	3: 88,798,195 (GRCm39)	L800H	probably damaging	Het
Gpn3	T	A	5: 122,512,022 (GRCm39)	S33T	probably benign	Het
Gria4	T	C	9: 4,456,072 (GRCm39)	M743V	probably damaging	Het
Hira	A	G	16: 18,729,457 (GRCm39)	N109D	probably damaging	Het
Hsd3b3	A	G	3: 98,660,621 (GRCm39)		probably null	Het
Hsf2	T	G	10: 57,387,591 (GRCm39)	S370A	probably benign	Het
Htt	T	A	5: 35,028,103 (GRCm39)	D1786E	probably benign	Het
Ifit1bl2	T	A	19: 34,597,534 (GRCm39)	R27S	possibly damaging	Het
Il17rb	G	A	14: 29,724,928 (GRCm39)	A186V	probably benign	Het
Irak4	G	T	15: 94,449,691 (GRCm39)	E57*	probably null	Het
Kcnh2	T	A	5: 24,536,921 (GRCm39)	H221L	probably benign	Het
Kdm2b	T	C	5: 123,016,687 (GRCm39)	N1149D	probably damaging	Het
Kif26a	A	G	12: 112,141,303 (GRCm39)	H702R	probably damaging	Het
Kmt2e	T	C	5: 23,704,514 (GRCm39)	S1236P	possibly damaging	Het
Krt77	T	A	15: 101,773,910 (GRCm39)	D248V	probably damaging	Het
Lgals3bp	T	C	11: 118,284,106 (GRCm39)	N52S	possibly damaging	Het
Lhfpl6	T	C	3: 53,167,935 (GRCm39)	Y170H	probably damaging	Het
Lpin2	A	G	17: 71,539,243 (GRCm39)		probably benign	Het
Lrig3	T	C	10: 125,846,848 (GRCm39)	I872T	probably benign	Het
Lrit3	T	C	3: 129,582,412 (GRCm39)	E525G	probably damaging	Het
Lrp1	T	C	10: 127,425,453 (GRCm39)	T726A	probably benign	Het
Mep1a	A	T	17: 43,813,283 (GRCm39)	N46K	probably damaging	Het
Muc16	C	A	9: 18,490,613 (GRCm39)		probably null	Het
N4bp1	A	C	8: 87,579,794 (GRCm39)	N669K	possibly damaging	Het
Nelfcd	A	G	2: 174,257,739 (GRCm39)	D26G	probably benign	Het
Neu4	G	A	1: 93,952,873 (GRCm39)	S414N	probably damaging	Het
Nudt9	A	G	5: 104,212,935 (GRCm39)	D336G	probably benign	Het
Obscn	C	A	11: 58,954,509 (GRCm39)	G3691V	possibly damaging	Het
Or4c52	A	C	2: 89,845,393 (GRCm39)	I40L	possibly damaging	Het
Or5t17	A	G	2: 86,832,364 (GRCm39)	N17S	probably damaging	Het
Pdgfd	T	A	9: 6,288,627 (GRCm39)	S94T	probably benign	Het
Picalm	A	G	7: 89,826,770 (GRCm39)	H290R	probably benign	Het
Pou2f3	A	T	9: 43,050,634 (GRCm39)	L242Q	probably damaging	Het
Pou2f3	G	T	9: 43,050,635 (GRCm39)	L242M	probably damaging	Het
Prkd3	C	T	17: 79,289,360 (GRCm39)	G187D	probably damaging	Het
Pwp1	A	G	10: 85,710,326 (GRCm39)	S49G	probably damaging	Het
Ralgapa2	A	G	2: 146,184,129 (GRCm39)	L1626P	probably damaging	Het
Resf1	T	C	6: 149,228,555 (GRCm39)	S534P	probably damaging	Het
Rin2	A	G	2: 145,702,939 (GRCm39)	Y545C	probably damaging	Het
Rwdd4a	A	G	8: 47,995,832 (GRCm39)	T71A	probably benign	Het
Senp7	T	C	16: 55,982,738 (GRCm39)	F504L	possibly damaging	Het
Slc12a6	A	G	2: 112,167,703 (GRCm39)	T231A	probably damaging	Het
Slc13a2	CGTTATCTGT	CGT	11: 78,294,306 (GRCm39)		probably benign	Het
Slc34a1	A	G	13: 24,006,377 (GRCm39)	S468G	probably benign	Het
Slc4a10	A	G	2: 62,112,310 (GRCm39)	N697S	probably benign	Het
Spint1	T	A	2: 119,075,759 (GRCm39)	V194E	possibly damaging	Het
Sptlc2	A	T	12: 87,434,905 (GRCm39)	M14K	probably benign	Het
Stard9	A	G	2: 120,531,608 (GRCm39)	K2622E	probably benign	Het
Tbc1d5	T	C	17: 51,089,338 (GRCm39)	N614S	probably benign	Het
Tdpoz2	A	T	3: 93,559,190 (GRCm39)	C261S	probably benign	Het
Tmem150b	A	T	7: 4,727,373 (GRCm39)	I44N	probably benign	Het
Ttn	A	G	2: 76,608,502 (GRCm39)	L17807P	probably damaging	Het
Vcan	G	A	13: 89,873,492 (GRCm39)	R121W	probably damaging	Het
Vmn2r15	T	A	5: 109,441,291 (GRCm39)	H189L	possibly damaging	Het
Vmn2r19	A	G	6: 123,313,212 (GRCm39)	S761G	probably benign	Het
Wdr11	A	T	7: 129,200,830 (GRCm39)	K34*	probably null	Het
Zfp120	A	T	2: 149,959,964 (GRCm39)	S141R	possibly damaging	Het
Zfp462	C	G	4: 55,010,253 (GRCm39)	P740A	probably benign	Het

Other mutations in Agpat3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00557:Agpat3	APN	10	78,109,516 (GRCm39)	utr 3 prime	probably benign
IGL02621:Agpat3	APN	10	78,120,900 (GRCm39)	missense	probably damaging	1.00
IGL02725:Agpat3	APN	10	78,113,889 (GRCm39)	missense	probably benign	0.02
P0008:Agpat3	UTSW	10	78,123,710 (GRCm39)	missense	probably damaging	1.00
PIT4445001:Agpat3	UTSW	10	78,109,927 (GRCm39)	missense	possibly damaging	0.94
R0041:Agpat3	UTSW	10	78,123,881 (GRCm39)	unclassified	probably benign
R0126:Agpat3	UTSW	10	78,113,890 (GRCm39)	missense	probably null	0.59
R0226:Agpat3	UTSW	10	78,113,863 (GRCm39)	missense	possibly damaging	0.89
R1520:Agpat3	UTSW	10	78,123,857 (GRCm39)	start codon destroyed	probably null	1.00
R2118:Agpat3	UTSW	10	78,113,918 (GRCm39)	missense	probably damaging	1.00
R5493:Agpat3	UTSW	10	78,120,069 (GRCm39)	missense	possibly damaging	0.89
R5599:Agpat3	UTSW	10	78,110,103 (GRCm39)	missense	probably benign	0.39
R7528:Agpat3	UTSW	10	78,123,746 (GRCm39)	missense	probably damaging	1.00
R7895:Agpat3	UTSW	10	78,119,034 (GRCm39)	missense	probably benign	0.34
R8351:Agpat3	UTSW	10	78,110,086 (GRCm39)	missense	probably damaging	1.00
R8425:Agpat3	UTSW	10	78,118,211 (GRCm39)	missense	possibly damaging	0.89
R8949:Agpat3	UTSW	10	78,118,989 (GRCm39)	missense	probably benign	0.00
R9136:Agpat3	UTSW	10	78,120,893 (GRCm39)	missense	probably damaging	1.00
X0003:Agpat3	UTSW	10	78,110,007 (GRCm39)	nonsense	probably null

Predicted Primers

PCR Primer
(F):5'- ATACCGCTCAATGAGAAGGG -3'
(R):5'- TCCCAGAACCTGTGGAAAAC -3'

Sequencing Primer
(F):5'- CTCAATGAGAAGGGGCCAAGC -3'
(R):5'- CCTGTGGAAAACCGGGGTG -3'

Posted On

2018-03-15