Incidental Mutation 'R6269:Xrra1'
ID 507223
Institutional Source Beutler Lab
Gene Symbol Xrra1
Ensembl Gene ENSMUSG00000035211
Gene Name X-ray radiation resistance associated 1
Synonyms
MMRRC Submission 044440-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.075) question?
Stock # R6269 (G1)
Quality Score 128.008
Status Not validated
Chromosome 7
Chromosomal Location 99508425-99567031 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 99566679 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Tyrosine to Histidine at position 732 (Y732H)
Ref Sequence ENSEMBL: ENSMUSP00000035929 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000036155] [ENSMUST00000080817]
AlphaFold Q3U3V8
Predicted Effect probably damaging
Transcript: ENSMUST00000036155
AA Change: Y732H

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000035929
Gene: ENSMUSG00000035211
AA Change: Y732H

DomainStartEndE-ValueType
low complexity region 41 52 N/A INTRINSIC
Blast:LRR 144 168 4e-6 BLAST
LRR 191 214 2.02e-1 SMART
LRR 232 253 1.67e2 SMART
LRR 257 278 6.41e1 SMART
LRR 371 398 4.09e1 SMART
low complexity region 748 756 N/A INTRINSIC
Predicted Effect probably benign
Transcript: ENSMUST00000080817
SMART Domains Protein: ENSMUSP00000079631
Gene: ENSMUSG00000058761

DomainStartEndE-ValueType
low complexity region 2 27 N/A INTRINSIC
low complexity region 32 46 N/A INTRINSIC
RING 61 96 3.16e-1 SMART
Blast:RING 133 176 7e-8 BLAST
low complexity region 302 314 N/A INTRINSIC
low complexity region 649 661 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000208449
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.7%
  • 10x: 98.6%
  • 20x: 96.3%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 59 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Aak1 T A 6: 86,941,033 (GRCm39) I609N unknown Het
Ano10 A T 9: 122,090,308 (GRCm39) I277N probably damaging Het
Ap2b1 A G 11: 83,237,499 (GRCm39) D483G probably damaging Het
As3mt T A 19: 46,708,391 (GRCm39) F226Y probably damaging Het
Atp10a G A 7: 58,453,487 (GRCm39) R855H possibly damaging Het
Bin3 T A 14: 70,374,611 (GRCm39) H213Q probably benign Het
Bora T C 14: 99,311,103 (GRCm39) C512R probably damaging Het
Camk2b T A 11: 5,928,497 (GRCm39) D414V probably damaging Het
Ccdc27 A T 4: 154,122,179 (GRCm39) L233Q unknown Het
Ccdc73 T C 2: 104,737,978 (GRCm39) S25P probably damaging Het
Cenpf G A 1: 189,392,117 (GRCm39) H572Y probably benign Het
Chil4 A G 3: 106,111,487 (GRCm39) V209A probably damaging Het
Clstn1 T C 4: 149,728,524 (GRCm39) V650A probably benign Het
Cox6a2 T A 7: 127,805,437 (GRCm39) S11C probably benign Het
Csf1 T C 3: 107,656,317 (GRCm39) E238G probably benign Het
Cyp2c23 T A 19: 44,017,626 (GRCm39) M1L unknown Het
Cyp4a10 T A 4: 115,381,509 (GRCm39) M191K probably damaging Het
Cyp4a14 A G 4: 115,348,328 (GRCm39) V383A possibly damaging Het
D130052B06Rik T G 11: 33,573,916 (GRCm39) V171G possibly damaging Het
Dlgap2 A G 8: 14,872,369 (GRCm39) T617A probably benign Het
Dyrk4 T A 6: 126,863,690 (GRCm39) I351F probably damaging Het
Epg5 T C 18: 77,991,585 (GRCm39) V94A probably benign Het
Fam111a A G 19: 12,565,807 (GRCm39) T519A probably benign Het
Gdpd4 A G 7: 97,623,669 (GRCm39) S314G probably damaging Het
Gm9758 T A 5: 14,962,274 (GRCm39) K111N possibly damaging Het
Gpr137b A T 13: 13,538,096 (GRCm39) V285E probably damaging Het
Hyls1 G A 9: 35,472,480 (GRCm39) S312F probably benign Het
Itgal T A 7: 126,929,389 (GRCm39) L1102Q probably null Het
Kctd19 T A 8: 106,121,992 (GRCm39) Y185F possibly damaging Het
Kif5b A G 18: 6,223,558 (GRCm39) L317P possibly damaging Het
Klhl42 C A 6: 146,993,805 (GRCm39) A259E probably damaging Het
Lrrc2 A G 9: 110,810,017 (GRCm39) D351G probably damaging Het
Med12l A G 3: 59,135,243 (GRCm39) E797G probably damaging Het
Mink1 A G 11: 70,489,813 (GRCm39) E63G probably damaging Het
Nek9 T C 12: 85,379,103 (GRCm39) probably null Het
Or12e8 A T 2: 87,677,218 (GRCm39) H201L possibly damaging Het
Otx1 C A 11: 21,947,037 (GRCm39) A91S probably damaging Het
Parp6 G A 9: 59,557,295 (GRCm39) V627I probably benign Het
Pclo C T 5: 14,572,108 (GRCm39) Q498* probably null Het
Pdlim5 T C 3: 142,018,086 (GRCm39) T170A possibly damaging Het
Pgap1 A T 1: 54,587,167 (GRCm39) Y136* probably null Het
Pgghg T A 7: 140,526,097 (GRCm39) N563K probably damaging Het
Plxnb2 A G 15: 89,044,916 (GRCm39) M1143T probably benign Het
Pnpla1 G A 17: 29,100,342 (GRCm39) G403E probably benign Het
Prc1 G A 7: 79,959,175 (GRCm39) R381Q probably damaging Het
Psph A T 5: 129,843,529 (GRCm39) I175N probably damaging Het
Rbbp8nl T A 2: 179,923,305 (GRCm39) K131* probably null Het
Rsf1 GGCG GGCGACGGCCGCG 7: 97,229,113 (GRCm39) probably benign Homo
Sde2 G A 1: 180,683,371 (GRCm39) V42I probably benign Het
Slc25a3 G A 10: 90,952,963 (GRCm39) R314* probably null Het
Spag9 A G 11: 93,935,333 (GRCm39) N48S probably benign Het
Srp54b T C 12: 55,302,757 (GRCm39) M351T possibly damaging Het
Tasor2 C T 13: 3,631,891 (GRCm39) R870H possibly damaging Het
Tcaf2 A G 6: 42,604,342 (GRCm39) L679P probably damaging Het
Tnrc6b T A 15: 80,764,944 (GRCm39) N815K probably benign Het
Usp17la A T 7: 104,509,557 (GRCm39) Q54L possibly damaging Het
Vmn2r92 T A 17: 18,387,036 (GRCm39) I125K probably benign Het
Zfp131 A G 13: 120,227,941 (GRCm39) S603P possibly damaging Het
Zfp28 G T 7: 6,396,612 (GRCm39) S349I probably benign Het
Other mutations in Xrra1
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01782:Xrra1 APN 7 99,524,401 (GRCm39) missense possibly damaging 0.76
IGL01938:Xrra1 APN 7 99,528,676 (GRCm39) critical splice donor site probably null
IGL02064:Xrra1 APN 7 99,563,411 (GRCm39) missense probably damaging 1.00
IGL02286:Xrra1 APN 7 99,563,434 (GRCm39) missense possibly damaging 0.62
IGL02415:Xrra1 APN 7 99,565,150 (GRCm39) missense probably benign
R0332:Xrra1 UTSW 7 99,525,449 (GRCm39) missense probably damaging 1.00
R0465:Xrra1 UTSW 7 99,528,578 (GRCm39) missense probably benign 0.00
R0533:Xrra1 UTSW 7 99,524,352 (GRCm39) splice site probably null
R0601:Xrra1 UTSW 7 99,560,175 (GRCm39) missense possibly damaging 0.95
R1539:Xrra1 UTSW 7 99,520,564 (GRCm39) missense probably damaging 1.00
R1672:Xrra1 UTSW 7 99,547,647 (GRCm39) missense probably benign 0.00
R1687:Xrra1 UTSW 7 99,525,451 (GRCm39) missense probably damaging 1.00
R1962:Xrra1 UTSW 7 99,560,227 (GRCm39) missense probably damaging 1.00
R2504:Xrra1 UTSW 7 99,546,803 (GRCm39) missense probably damaging 1.00
R4765:Xrra1 UTSW 7 99,555,775 (GRCm39) missense probably benign 0.19
R4967:Xrra1 UTSW 7 99,555,730 (GRCm39) missense probably damaging 0.99
R5213:Xrra1 UTSW 7 99,547,690 (GRCm39) missense possibly damaging 0.47
R5663:Xrra1 UTSW 7 99,535,250 (GRCm39) missense probably damaging 1.00
R5986:Xrra1 UTSW 7 99,525,462 (GRCm39) missense probably benign 0.40
R6256:Xrra1 UTSW 7 99,563,671 (GRCm39) missense probably damaging 0.99
R7234:Xrra1 UTSW 7 99,563,456 (GRCm39) missense possibly damaging 0.49
R7316:Xrra1 UTSW 7 99,525,423 (GRCm39) critical splice acceptor site probably null
R7655:Xrra1 UTSW 7 99,560,189 (GRCm39) missense probably benign 0.10
R7656:Xrra1 UTSW 7 99,560,189 (GRCm39) missense probably benign 0.10
R8688:Xrra1 UTSW 7 99,555,752 (GRCm39) missense probably damaging 1.00
R8788:Xrra1 UTSW 7 99,555,761 (GRCm39) missense probably benign 0.02
R9016:Xrra1 UTSW 7 99,525,462 (GRCm39) missense probably benign 0.11
R9196:Xrra1 UTSW 7 99,563,699 (GRCm39) critical splice donor site probably null
R9233:Xrra1 UTSW 7 99,516,574 (GRCm39) missense probably benign
R9545:Xrra1 UTSW 7 99,535,334 (GRCm39) missense possibly damaging 0.46
R9641:Xrra1 UTSW 7 99,561,088 (GRCm39) missense probably benign 0.05
R9742:Xrra1 UTSW 7 99,563,660 (GRCm39) missense probably benign 0.40
X0017:Xrra1 UTSW 7 99,565,307 (GRCm39) missense probably damaging 1.00
X0021:Xrra1 UTSW 7 99,547,693 (GRCm39) missense possibly damaging 0.63
Predicted Primers PCR Primer
(F):5'- AGCACCTTCGGATCTTGTAAGAC -3'
(R):5'- GTGCAGCTCTACTCTTTCGAG -3'

Sequencing Primer
(F):5'- AAGACATGACTTCCTACTGTCGGG -3'
(R):5'- TCTTTCGAGTCGCTGGCCG -3'
Posted On 2018-03-15