Incidental Mutation 'R5940:Ppargc1a'
ID 462482
Institutional Source Beutler Lab
Gene Symbol Ppargc1a
Ensembl Gene ENSMUSG00000029167
Gene Name peroxisome proliferative activated receptor, gamma, coactivator 1 alpha
Synonyms A830037N07Rik, Pgc-1alphaa, Pgc-1alpha, Pgco1, Pgc1, Gm11133, PPAR Gamma Coactivator-1
MMRRC Submission 044132-MU
Accession Numbers
Essential gene? Probably essential (E-score: 0.843) question?
Stock # R5940 (G1)
Quality Score 225
Status Validated
Chromosome 5
Chromosomal Location 51611592-51725068 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) C to T at 51631253 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Alanine to Threonine at position 459 (A459T)
Ref Sequence ENSEMBL: ENSMUSP00000143553 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000031059] [ENSMUST00000132734] [ENSMUST00000151104] [ENSMUST00000196968]
AlphaFold O70343
Predicted Effect probably benign
Transcript: ENSMUST00000031059
SMART Domains Protein: ENSMUSP00000138397
Gene: ENSMUSG00000029167

DomainStartEndE-ValueType
low complexity region 23 40 N/A INTRINSIC
low complexity region 141 147 N/A INTRINSIC
PDB:3D24|D 197 218 1e-7 PDB
Predicted Effect probably damaging
Transcript: ENSMUST00000132734
AA Change: A459T

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000117040
Gene: ENSMUSG00000029167
AA Change: A459T

DomainStartEndE-ValueType
low complexity region 23 40 N/A INTRINSIC
low complexity region 141 147 N/A INTRINSIC
PDB:3D24|D 197 218 4e-7 PDB
low complexity region 294 300 N/A INTRINSIC
low complexity region 558 613 N/A INTRINSIC
low complexity region 615 636 N/A INTRINSIC
RRM 677 746 4.61e-5 SMART
Predicted Effect probably benign
Transcript: ENSMUST00000151104
SMART Domains Protein: ENSMUSP00000116566
Gene: ENSMUSG00000029167

DomainStartEndE-ValueType
low complexity region 19 36 N/A INTRINSIC
low complexity region 137 143 N/A INTRINSIC
PDB:3D24|D 193 214 1e-7 PDB
Predicted Effect probably damaging
Transcript: ENSMUST00000196968
AA Change: A459T

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)
SMART Domains Protein: ENSMUSP00000143553
Gene: ENSMUSG00000029167
AA Change: A459T

DomainStartEndE-ValueType
low complexity region 23 40 N/A INTRINSIC
low complexity region 141 147 N/A INTRINSIC
PDB:3D24|D 197 218 4e-7 PDB
low complexity region 294 300 N/A INTRINSIC
low complexity region 558 613 N/A INTRINSIC
low complexity region 615 636 N/A INTRINSIC
Meta Mutation Damage Score 0.1330 question?
Coding Region Coverage
  • 1x: 99.9%
  • 3x: 99.6%
  • 10x: 98.2%
  • 20x: 95.0%
Validation Efficiency 96% (88/92)
MGI Phenotype FUNCTION: This gene encodes a transcriptional coactivator that induces and coordinates gene expression regulating mitochondrial biogenesis, respiration, hepatic gluconeogenesis, thermogenic program in brown fat and muscle fiber-type switching. Mice lacking the encoded protein exhibit reduced thermogenic capacity, hyperactivity and resistance to diet-induced obesity. Mice lacking the encoded protein specifically in the heart exhibit peripartum cardiomyopathy. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2015]
PHENOTYPE: Homozygous null mice display partial postnatal lethality, abnormal glucose and insulin homeostasis, resistance to diet induced obesity, increased oxygen consumption, spongiform encephalopathy, hyperactivity, increased startle reflex, and limb grasping. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 79 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
3425401B19Rik T C 14: 32,384,645 (GRCm39) Y440C possibly damaging Het
Aasdh G T 5: 77,030,745 (GRCm39) S618R probably benign Het
Alpk1 T G 3: 127,464,595 (GRCm39) T1228P probably benign Het
Ank3 T C 10: 69,756,316 (GRCm39) V850A probably benign Het
Apeh A T 9: 107,969,098 (GRCm39) probably null Het
Ash1l C T 3: 88,891,343 (GRCm39) T1074I probably damaging Het
C3 G A 17: 57,517,244 (GRCm39) S1297F possibly damaging Het
Cchcr1 G A 17: 35,835,890 (GRCm39) R284Q probably damaging Het
Cd93 A T 2: 148,284,152 (GRCm39) I398N probably benign Het
Cdcp3 A T 7: 130,839,992 (GRCm39) D638V probably damaging Het
Chrd G T 16: 20,553,336 (GRCm39) R226L probably null Het
Clvs1 A T 4: 9,449,443 (GRCm39) N344I possibly damaging Het
Cyp4v3 A T 8: 45,774,821 (GRCm39) I111N probably damaging Het
Cysltr2 T A 14: 73,267,389 (GRCm39) Y107F probably damaging Het
Cysltr2 T C 14: 73,266,931 (GRCm39) K260E probably benign Het
Czib A G 4: 107,750,485 (GRCm39) probably benign Het
Defb47 A T 14: 63,238,359 (GRCm39) E28D probably benign Het
Dnajc30 T A 5: 135,093,413 (GRCm39) Y103* probably null Het
Drap1 T C 19: 5,473,028 (GRCm39) T160A probably benign Het
Dsp A G 13: 38,380,002 (GRCm39) E2249G possibly damaging Het
E2f8 T A 7: 48,520,825 (GRCm39) I499F probably benign Het
Ebf1 T A 11: 44,512,048 (GRCm39) Y116N probably damaging Het
Ecrg4 C T 1: 43,776,401 (GRCm39) R41* probably null Het
Ect2 C A 3: 27,169,614 (GRCm39) E746D probably benign Het
Enpep T A 3: 129,106,227 (GRCm39) Y333F probably damaging Het
Fat4 T C 3: 38,943,798 (GRCm39) V897A probably benign Het
Gja3 T A 14: 57,273,317 (GRCm39) S352C probably damaging Het
Gpr153 C A 4: 152,367,832 (GRCm39) P561Q probably benign Het
Hlcs T C 16: 93,935,571 (GRCm39) M574V probably damaging Het
Hmcn1 A G 1: 150,532,973 (GRCm39) V3070A probably benign Het
Hsd3b2 G T 3: 98,619,287 (GRCm39) N219K probably benign Het
Htra3 T C 5: 35,810,324 (GRCm39) I453V possibly damaging Het
Klrc1 A T 6: 129,651,898 (GRCm39) M220K possibly damaging Het
Kntc1 T G 5: 123,924,258 (GRCm39) I1048S probably benign Het
Lrrc37 T C 11: 103,504,712 (GRCm39) S243G probably benign Het
Macf1 T A 4: 123,326,674 (GRCm39) D2822V probably damaging Het
Mcu T A 10: 59,292,554 (GRCm39) I42F possibly damaging Het
Mkln1 T A 6: 31,466,307 (GRCm39) D521E probably damaging Het
Ms4a13 T C 19: 11,170,330 (GRCm39) N5D possibly damaging Het
Msh3 T G 13: 92,386,351 (GRCm39) N838T probably damaging Het
Msl2 T A 9: 100,978,290 (GRCm39) C221* probably null Het
Ncapd2 A G 6: 125,145,832 (GRCm39) S1310P probably benign Het
Ncoa6 A T 2: 155,257,785 (GRCm39) M586K probably damaging Het
Ndel1 C T 11: 68,713,397 (GRCm39) probably benign Het
Ndst4 T C 3: 125,355,068 (GRCm39) probably benign Het
Nes T G 3: 87,883,259 (GRCm39) V506G probably damaging Het
Nrg1 T C 8: 32,339,372 (GRCm39) K200E probably damaging Het
Nt5c1b A G 12: 10,425,515 (GRCm39) K295E probably damaging Het
Or4f54 G A 2: 111,122,729 (GRCm39) V39M possibly damaging Het
Or5b123 T A 19: 13,596,517 (GRCm39) probably null Het
Or6s1 T A 14: 51,308,179 (GRCm39) I224L probably damaging Het
Or8b4 C T 9: 37,830,733 (GRCm39) T260I probably damaging Het
Or8g51 G T 9: 38,609,007 (GRCm39) Y218* probably null Het
Or8k38 A T 2: 86,488,394 (GRCm39) M136K probably damaging Het
Otx1 C A 11: 21,947,037 (GRCm39) A91S probably damaging Het
Pde1a A G 2: 79,718,183 (GRCm39) probably null Het
Pds5a A G 5: 65,801,328 (GRCm39) probably benign Het
Plbd1 A T 6: 136,590,719 (GRCm39) probably benign Het
Plod2 T A 9: 92,473,450 (GRCm39) V292E probably benign Het
Polg A G 7: 79,103,819 (GRCm39) V879A possibly damaging Het
Prorp T A 12: 55,351,659 (GRCm39) W323R probably damaging Het
Psip1 T C 4: 83,394,559 (GRCm39) E83G probably damaging Het
Rhbdf1 T C 11: 32,159,847 (GRCm39) D843G probably benign Het
Rnpepl1 G T 1: 92,845,434 (GRCm39) C451F probably damaging Het
Rrp1 T C 10: 78,241,249 (GRCm39) D206G probably damaging Het
Setbp1 A T 18: 78,798,703 (GRCm39) D1492E probably damaging Het
Sh3bp5 C A 14: 31,099,452 (GRCm39) R265L probably benign Het
Slc16a6 C T 11: 109,364,022 (GRCm39) probably benign Homo
Slc7a6os A G 8: 106,937,437 (GRCm39) S37P probably damaging Het
Tenm4 T A 7: 96,495,102 (GRCm39) S1140T probably damaging Het
Thoc6 C A 17: 23,889,315 (GRCm39) R115L probably benign Het
Tmem63c C T 12: 87,121,946 (GRCm39) H385Y probably benign Het
Trpm8 G T 1: 88,279,137 (GRCm39) E649* probably null Het
Usf1 A G 1: 171,245,347 (GRCm39) E253G possibly damaging Het
Vps13d T C 4: 144,801,545 (GRCm39) T443A probably benign Het
Wdr86 T C 5: 24,927,660 (GRCm39) Y93C probably damaging Het
Zfp597 A T 16: 3,683,685 (GRCm39) I357N probably damaging Het
Zfp709 A G 8: 72,644,064 (GRCm39) I497V possibly damaging Het
Zxdc T C 6: 90,347,307 (GRCm39) S223P probably damaging Het
Other mutations in Ppargc1a
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01016:Ppargc1a APN 5 51,655,373 (GRCm39) splice site probably null
IGL01063:Ppargc1a APN 5 51,631,664 (GRCm39) missense probably benign 0.43
IGL01800:Ppargc1a APN 5 51,652,063 (GRCm39) missense probably damaging 1.00
IGL02179:Ppargc1a APN 5 51,631,053 (GRCm39) missense possibly damaging 0.90
IGL02336:Ppargc1a APN 5 51,653,068 (GRCm39) nonsense probably null
IGL02368:Ppargc1a APN 5 51,631,498 (GRCm39) missense probably benign 0.05
BB007:Ppargc1a UTSW 5 51,630,264 (GRCm39) missense unknown
BB017:Ppargc1a UTSW 5 51,630,264 (GRCm39) missense unknown
R1300:Ppargc1a UTSW 5 51,706,014 (GRCm39) missense probably damaging 1.00
R2048:Ppargc1a UTSW 5 51,705,858 (GRCm39) missense probably damaging 1.00
R2054:Ppargc1a UTSW 5 51,631,130 (GRCm39) missense possibly damaging 0.47
R2211:Ppargc1a UTSW 5 51,631,601 (GRCm39) missense possibly damaging 0.47
R2848:Ppargc1a UTSW 5 51,631,151 (GRCm39) missense probably benign 0.02
R4094:Ppargc1a UTSW 5 51,647,406 (GRCm39) missense possibly damaging 0.47
R4419:Ppargc1a UTSW 5 51,652,044 (GRCm39) missense probably damaging 1.00
R4552:Ppargc1a UTSW 5 51,620,557 (GRCm39) intron probably benign
R4702:Ppargc1a UTSW 5 51,653,038 (GRCm39) missense possibly damaging 0.73
R4855:Ppargc1a UTSW 5 51,631,564 (GRCm39) missense possibly damaging 0.89
R5287:Ppargc1a UTSW 5 51,620,167 (GRCm39) intron probably benign
R5313:Ppargc1a UTSW 5 51,615,581 (GRCm39) utr 3 prime probably benign
R5403:Ppargc1a UTSW 5 51,620,167 (GRCm39) intron probably benign
R5711:Ppargc1a UTSW 5 51,631,562 (GRCm39) missense probably damaging 1.00
R5918:Ppargc1a UTSW 5 51,620,579 (GRCm39) intron probably benign
R6170:Ppargc1a UTSW 5 51,631,253 (GRCm39) missense probably damaging 1.00
R6415:Ppargc1a UTSW 5 51,620,176 (GRCm39) intron probably benign
R7718:Ppargc1a UTSW 5 51,655,504 (GRCm39) missense probably damaging 1.00
R7755:Ppargc1a UTSW 5 51,630,883 (GRCm39) missense unknown
R7793:Ppargc1a UTSW 5 51,619,851 (GRCm39) splice site probably null
R7849:Ppargc1a UTSW 5 51,705,855 (GRCm39) missense probably benign 0.45
R7930:Ppargc1a UTSW 5 51,630,264 (GRCm39) missense unknown
R8169:Ppargc1a UTSW 5 51,631,026 (GRCm39) missense probably benign 0.19
R8497:Ppargc1a UTSW 5 51,647,570 (GRCm39) missense probably damaging 1.00
R8862:Ppargc1a UTSW 5 51,631,235 (GRCm39) missense possibly damaging 0.88
R8907:Ppargc1a UTSW 5 51,647,570 (GRCm39) missense probably damaging 0.99
R9017:Ppargc1a UTSW 5 51,630,251 (GRCm39) missense unknown
R9142:Ppargc1a UTSW 5 51,652,146 (GRCm39) missense possibly damaging 0.86
R9475:Ppargc1a UTSW 5 51,653,080 (GRCm39) missense probably damaging 1.00
R9580:Ppargc1a UTSW 5 51,620,139 (GRCm39) missense unknown
R9655:Ppargc1a UTSW 5 51,705,852 (GRCm39) critical splice donor site probably null
X0019:Ppargc1a UTSW 5 51,706,020 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- ACAATGAATAGGGCTGCGTGC -3'
(R):5'- TCACAGGAGCTCCAAGACTC -3'

Sequencing Primer
(F):5'- CCAAGGGTAGCTCAGTTTATCAC -3'
(R):5'- TCTAGACAACTAGACTTCAAAGATGC -3'
Posted On 2017-02-28