Incidental Mutation 'R0547:Copa'
ID 44887
Institutional Source Beutler Lab
Gene Symbol Copa
Ensembl Gene ENSMUSG00000026553
Gene Name coatomer protein complex subunit alpha
Synonyms xenin
MMRRC Submission 038739-MU
Accession Numbers
Essential gene? Probably essential (E-score: 0.970) question?
Stock # R0547 (G1)
Quality Score 225
Status Validated
Chromosome 1
Chromosomal Location 171910096-171949897 bp(+) (GRCm39)
Type of Mutation splice site
DNA Base Change (assembly) T to C at 171949254 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000118179 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000027833] [ENSMUST00000135192]
AlphaFold Q8CIE6
Predicted Effect probably benign
Transcript: ENSMUST00000027833
SMART Domains Protein: ENSMUSP00000027833
Gene: ENSMUSG00000026553

DomainStartEndE-ValueType
WD40 2 37 2.86e0 SMART
WD40 40 79 1.11e-6 SMART
WD40 82 121 4.76e-6 SMART
WD40 124 163 2.24e-11 SMART
WD40 194 233 2.98e-7 SMART
WD40 238 277 8.42e-7 SMART
WD40 280 318 1.38e1 SMART
Pfam:Coatomer_WDAD 338 776 5.4e-144 PFAM
Pfam:COPI_C 824 1233 1.4e-190 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000122845
Predicted Effect probably benign
Transcript: ENSMUST00000135192
SMART Domains Protein: ENSMUSP00000118179
Gene: ENSMUSG00000026553

DomainStartEndE-ValueType
WD40 2 37 2.86e0 SMART
WD40 40 79 1.11e-6 SMART
WD40 82 121 4.76e-6 SMART
WD40 124 163 2.24e-11 SMART
WD40 194 233 2.98e-7 SMART
WD40 238 277 8.42e-7 SMART
WD40 280 318 1.38e1 SMART
Pfam:Coatomer_WDAD 338 767 1.1e-148 PFAM
Pfam:COPI_C 815 1224 3.6e-216 PFAM
Predicted Effect noncoding transcript
Transcript: ENSMUST00000142765
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.5%
  • 10x: 96.8%
  • 20x: 94.3%
Validation Efficiency 98% (57/58)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] In eukaryotic cells, protein transport between the endoplasmic reticulum and Golgi compartments is mediated in part by non-clathrin-coated vesicular coat proteins (COPs). Seven coat proteins have been identified, and they represent subunits of a complex known as coatomer. The subunits are designated alpha-COP, beta-COP, beta-prime-COP, gamma-COP, delta-COP, epsilon-COP, and zeta-COP. The alpha-COP, encoded by COPA, shares high sequence similarity with RET1P, the alpha subunit of the coatomer complex in yeast. Also, the N-terminal 25 amino acids of alpha-COP encode the bioactive peptide, xenin, which stimulates exocrine pancreatic secretion and may act as a gastrointestinal hormone. Alternative splicing results in multiple splice forms encoding distinct isoforms. [provided by RefSeq, Jul 2008]
Allele List at MGI

All alleles(6) : Gene trapped(6)

 

Other mutations in this stock
Total: 58 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
2310057N15Rik A G 16: 88,570,498 (GRCm39) Y181H probably benign Het
A530084C06Rik A G 13: 31,742,813 (GRCm39) probably benign Het
Adamtsl1 A G 4: 86,274,592 (GRCm39) D1208G probably benign Het
Ankrd55 T C 13: 112,504,757 (GRCm39) F501S probably benign Het
Aox1 G A 1: 58,349,201 (GRCm39) D656N probably damaging Het
Atr A T 9: 95,781,218 (GRCm39) probably benign Het
Bicra G A 7: 15,706,173 (GRCm39) R1423W probably damaging Het
Cabyr T A 18: 12,884,073 (GRCm39) S187T probably benign Het
Car5b G A X: 162,762,297 (GRCm39) R282C probably damaging Het
Cdon A T 9: 35,368,794 (GRCm39) T343S possibly damaging Het
Cep350 C T 1: 155,777,181 (GRCm39) probably null Het
Cimap1a A G 7: 140,428,728 (GRCm39) probably null Het
Cyp4f18 T C 8: 72,749,854 (GRCm39) D265G probably benign Het
Dgkb T A 12: 38,654,157 (GRCm39) C759S probably benign Het
Dnah6 T C 6: 73,021,757 (GRCm39) M3470V probably benign Het
Eif4g2 T C 7: 110,677,500 (GRCm39) N177S probably damaging Het
Etfb C T 7: 43,104,002 (GRCm39) Q145* probably null Het
Flnb T A 14: 7,912,943 (GRCm38) probably null Het
G430095P16Rik G A 8: 85,453,271 (GRCm39) probably benign Het
Gfral A T 9: 76,115,924 (GRCm39) S17T probably benign Het
Gpr26 T C 7: 131,586,026 (GRCm39) I332T probably benign Het
Greb1 T A 12: 16,773,412 (GRCm39) T221S probably benign Het
Haus5 A T 7: 30,358,508 (GRCm39) S289T probably damaging Het
Ighv6-4 T C 12: 114,370,221 (GRCm39) Y77C probably damaging Het
Il23r A T 6: 67,400,685 (GRCm39) D548E probably benign Het
Il23r A T 6: 67,463,235 (GRCm39) F86Y possibly damaging Het
Inppl1 A T 7: 101,480,210 (GRCm39) M424K probably benign Het
Jam3 A G 9: 27,010,184 (GRCm39) Y267H probably damaging Het
Lrrc37 T C 11: 103,510,990 (GRCm39) N326S unknown Het
Mms19 A T 19: 41,951,857 (GRCm39) M160K probably damaging Het
Muc2 CGTG CGTGTG 7: 141,699,185 (GRCm38) probably null Het
Mup5 A G 4: 61,751,237 (GRCm39) L137P probably damaging Het
Mylk G C 16: 34,699,845 (GRCm39) E403Q possibly damaging Het
Ntrk2 G A 13: 59,022,184 (GRCm39) S413N probably damaging Het
Nuak2 C A 1: 132,259,941 (GRCm39) T573N probably benign Het
Or4m1 A T 14: 50,557,575 (GRCm39) I239K probably benign Het
Or52h9 G A 7: 104,202,563 (GRCm39) V146M probably benign Het
Padi4 GCTGCGTACCTCCAC GC 4: 140,475,760 (GRCm39) probably benign Het
Pclo T A 5: 14,842,086 (GRCm39) I4787N unknown Het
Pde8a G T 7: 80,973,878 (GRCm39) V612L probably benign Het
Pear1 A T 3: 87,696,107 (GRCm39) probably null Het
Pgbd1 A G 13: 21,607,688 (GRCm39) Y169H probably damaging Het
Pkd1l1 A G 11: 8,786,448 (GRCm39) probably benign Het
Prkag3 C T 1: 74,783,879 (GRCm39) probably null Het
Rsph9 A T 17: 46,455,050 (GRCm39) S9T possibly damaging Het
Rxfp1 A T 3: 79,612,876 (GRCm39) probably null Het
Senp7 A G 16: 55,996,189 (GRCm39) E756G probably damaging Het
Serpina1e G T 12: 103,915,450 (GRCm39) T252K probably benign Het
Sipa1l1 T A 12: 82,484,510 (GRCm39) S1555T probably benign Het
Slain1 T C 14: 103,932,711 (GRCm39) S432P probably damaging Het
Slc37a2 A T 9: 37,144,418 (GRCm39) probably null Het
Thg1l C T 11: 45,845,018 (GRCm39) R18Q probably damaging Het
Tnn A G 1: 159,943,907 (GRCm39) probably benign Het
Trim32 G A 4: 65,531,491 (GRCm39) R16Q probably damaging Het
Tshz3 A G 7: 36,470,842 (GRCm39) T944A probably damaging Het
Ttn C G 2: 76,684,774 (GRCm39) probably benign Het
Ythdc2 T C 18: 44,973,331 (GRCm39) S323P possibly damaging Het
Zfp827 A G 8: 79,786,939 (GRCm39) N35S probably damaging Het
Other mutations in Copa
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00848:Copa APN 1 171,938,255 (GRCm39) missense possibly damaging 0.87
IGL01360:Copa APN 1 171,915,155 (GRCm39) splice site probably null
IGL01434:Copa APN 1 171,947,128 (GRCm39) missense probably benign 0.00
IGL01744:Copa APN 1 171,940,756 (GRCm39) missense probably benign 0.01
IGL01837:Copa APN 1 171,946,419 (GRCm39) missense probably benign 0.01
IGL01988:Copa APN 1 171,945,831 (GRCm39) missense probably benign 0.09
IGL02059:Copa APN 1 171,927,320 (GRCm39) missense probably damaging 0.96
IGL02123:Copa APN 1 171,939,695 (GRCm39) missense probably damaging 1.00
IGL02731:Copa APN 1 171,929,785 (GRCm39) missense possibly damaging 0.77
IGL03114:Copa APN 1 171,946,835 (GRCm39) nonsense probably null
P0027:Copa UTSW 1 171,939,515 (GRCm39) missense possibly damaging 0.87
PIT4434001:Copa UTSW 1 171,933,742 (GRCm39) missense probably benign 0.00
R0233:Copa UTSW 1 171,915,234 (GRCm39) critical splice donor site probably null
R0465:Copa UTSW 1 171,945,872 (GRCm39) missense probably damaging 1.00
R0568:Copa UTSW 1 171,939,704 (GRCm39) missense possibly damaging 0.91
R0628:Copa UTSW 1 171,918,592 (GRCm39) splice site probably benign
R1328:Copa UTSW 1 171,949,258 (GRCm39) splice site probably benign
R1494:Copa UTSW 1 171,931,694 (GRCm39) missense probably benign 0.27
R1728:Copa UTSW 1 171,939,554 (GRCm39) missense probably benign
R1758:Copa UTSW 1 171,931,711 (GRCm39) missense probably damaging 1.00
R1784:Copa UTSW 1 171,939,554 (GRCm39) missense probably benign
R1942:Copa UTSW 1 171,939,455 (GRCm39) missense probably damaging 1.00
R2054:Copa UTSW 1 171,946,524 (GRCm39) nonsense probably null
R2299:Copa UTSW 1 171,949,292 (GRCm39) missense probably benign 0.10
R2518:Copa UTSW 1 171,947,468 (GRCm39) missense probably benign
R2680:Copa UTSW 1 171,948,971 (GRCm39) nonsense probably null
R3080:Copa UTSW 1 171,940,716 (GRCm39) missense probably damaging 1.00
R3160:Copa UTSW 1 171,918,800 (GRCm39) missense probably damaging 1.00
R3161:Copa UTSW 1 171,918,800 (GRCm39) missense probably damaging 1.00
R3162:Copa UTSW 1 171,918,800 (GRCm39) missense probably damaging 1.00
R3162:Copa UTSW 1 171,918,800 (GRCm39) missense probably damaging 1.00
R3973:Copa UTSW 1 171,948,812 (GRCm39) missense probably benign 0.00
R3975:Copa UTSW 1 171,948,812 (GRCm39) missense probably benign 0.00
R4031:Copa UTSW 1 171,935,942 (GRCm39) missense probably damaging 1.00
R4155:Copa UTSW 1 171,928,992 (GRCm39) missense probably damaging 1.00
R4227:Copa UTSW 1 171,945,682 (GRCm39) intron probably benign
R4244:Copa UTSW 1 171,938,285 (GRCm39) missense probably benign 0.00
R4254:Copa UTSW 1 171,929,811 (GRCm39) missense probably damaging 1.00
R4291:Copa UTSW 1 171,919,964 (GRCm39) intron probably benign
R4323:Copa UTSW 1 171,946,831 (GRCm39) missense probably damaging 1.00
R4402:Copa UTSW 1 171,929,791 (GRCm39) missense probably damaging 1.00
R4711:Copa UTSW 1 171,947,555 (GRCm39) missense probably damaging 1.00
R4721:Copa UTSW 1 171,931,841 (GRCm39) splice site probably benign
R4773:Copa UTSW 1 171,932,787 (GRCm39) missense probably damaging 1.00
R4794:Copa UTSW 1 171,946,888 (GRCm39) missense probably damaging 1.00
R4887:Copa UTSW 1 171,919,843 (GRCm39) missense probably benign 0.39
R4953:Copa UTSW 1 171,910,453 (GRCm39) unclassified probably benign
R5139:Copa UTSW 1 171,948,896 (GRCm39) missense probably damaging 0.99
R5152:Copa UTSW 1 171,945,628 (GRCm39) missense probably benign 0.34
R5297:Copa UTSW 1 171,940,675 (GRCm39) missense probably damaging 1.00
R5586:Copa UTSW 1 171,932,789 (GRCm39) missense probably damaging 1.00
R5698:Copa UTSW 1 171,946,511 (GRCm39) nonsense probably null
R6283:Copa UTSW 1 171,946,415 (GRCm39) missense possibly damaging 0.79
R6921:Copa UTSW 1 171,939,491 (GRCm39) missense possibly damaging 0.63
R6934:Copa UTSW 1 171,938,253 (GRCm39) missense possibly damaging 0.64
R7009:Copa UTSW 1 171,918,567 (GRCm39) missense probably damaging 0.96
R7194:Copa UTSW 1 171,947,511 (GRCm39) missense probably damaging 0.99
R7348:Copa UTSW 1 171,929,790 (GRCm39) missense possibly damaging 0.96
R7710:Copa UTSW 1 171,937,411 (GRCm39) missense possibly damaging 0.50
R7745:Copa UTSW 1 171,939,509 (GRCm39) missense probably damaging 1.00
R7893:Copa UTSW 1 171,947,132 (GRCm39) nonsense probably null
R8168:Copa UTSW 1 171,927,239 (GRCm39) missense probably damaging 1.00
R8273:Copa UTSW 1 171,946,546 (GRCm39) critical splice donor site probably null
R8704:Copa UTSW 1 171,931,693 (GRCm39) missense probably benign 0.01
R8754:Copa UTSW 1 171,935,926 (GRCm39) missense probably damaging 1.00
R8757:Copa UTSW 1 171,947,081 (GRCm39) missense probably benign 0.04
R8759:Copa UTSW 1 171,947,081 (GRCm39) missense probably benign 0.04
R8885:Copa UTSW 1 171,925,312 (GRCm39) missense probably damaging 1.00
R8891:Copa UTSW 1 171,946,818 (GRCm39) missense probably damaging 1.00
R8927:Copa UTSW 1 171,931,737 (GRCm39) missense probably null 0.03
R8928:Copa UTSW 1 171,931,737 (GRCm39) missense probably null 0.03
R8956:Copa UTSW 1 171,937,480 (GRCm39) missense possibly damaging 0.65
R9063:Copa UTSW 1 171,944,529 (GRCm39) missense probably benign 0.00
R9295:Copa UTSW 1 171,939,823 (GRCm39) missense probably damaging 0.99
R9364:Copa UTSW 1 171,944,831 (GRCm39) missense probably benign 0.00
R9437:Copa UTSW 1 171,931,712 (GRCm39) missense possibly damaging 0.93
R9673:Copa UTSW 1 171,945,648 (GRCm39) missense probably benign 0.11
T0722:Copa UTSW 1 171,939,515 (GRCm39) missense possibly damaging 0.87
Z1177:Copa UTSW 1 171,933,690 (GRCm39) frame shift probably null
Predicted Primers PCR Primer
(F):5'- CATCTACCGTGGAAAACCAGTGGAG -3'
(R):5'- CCAACATCAACAAGCTGAATGTGGC -3'

Sequencing Primer
(F):5'- GGGTCACTACAGTAAGTACTGTCC -3'
(R):5'- TGGCTGTAAGGGGAGACTC -3'
Posted On 2013-06-11