Incidental Mutation 'R5420:Clec16a'
| ID |
428018 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Clec16a
|
| Ensembl Gene |
ENSMUSG00000068663 |
| Gene Name |
C-type lectin domain family 16, member A |
| Synonyms |
curt, 4932416N17Rik |
| MMRRC Submission |
042988-MU
|
| Accession Numbers |
|
| Essential gene? |
Probably non essential
(E-score: 0.125)
|
| Stock # |
R5420 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
16 |
| Chromosomal Location |
10363203-10562742 bp(+) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
G to A
at 10549543 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Cysteine to Tyrosine
at position 872
(C872Y)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000111490
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000066345]
[ENSMUST00000115823]
[ENSMUST00000115824]
[ENSMUST00000115828]
[ENSMUST00000155633]
|
| AlphaFold |
Q80U30 |
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000066345
AA Change: C872Y
PolyPhen 2
Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)
|
| SMART Domains |
Protein: ENSMUSP00000065423
Gene: ENSMUSG00000068663
AA Change: C872Y
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:FPL
|
51 |
199 |
1.1e-60 |
PFAM |
|
coiled coil region
|
398 |
419 |
N/A |
INTRINSIC |
|
low complexity region
|
877 |
924 |
N/A |
INTRINSIC |
|
low complexity region
|
943 |
955 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000115823
AA Change: C451Y
PolyPhen 2
Score 0.972 (Sensitivity: 0.77; Specificity: 0.96)
|
| SMART Domains |
Protein: ENSMUSP00000111489
Gene: ENSMUSG00000068663
AA Change: C451Y
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
456 |
491 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000115824
AA Change: C872Y
PolyPhen 2
Score 0.994 (Sensitivity: 0.69; Specificity: 0.97)
|
| SMART Domains |
Protein: ENSMUSP00000111490
Gene: ENSMUSG00000068663
AA Change: C872Y
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:FPL
|
51 |
198 |
5.9e-66 |
PFAM |
|
coiled coil region
|
398 |
419 |
N/A |
INTRINSIC |
|
low complexity region
|
877 |
924 |
N/A |
INTRINSIC |
|
low complexity region
|
943 |
955 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000115828
|
| SMART Domains |
Protein: ENSMUSP00000111494
Gene: ENSMUSG00000068663
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:FPL
|
51 |
199 |
2.1e-61 |
PFAM |
|
low complexity region
|
395 |
408 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably damaging
Transcript: ENSMUST00000155633
AA Change: C870Y
PolyPhen 2
Score 0.993 (Sensitivity: 0.70; Specificity: 0.97)
|
| SMART Domains |
Protein: ENSMUSP00000123189
Gene: ENSMUSG00000068663
AA Change: C870Y
| Domain | Start | End | E-Value | Type |
|---|
|
Pfam:FPL
|
51 |
199 |
1.1e-60 |
PFAM |
|
coiled coil region
|
396 |
417 |
N/A |
INTRINSIC |
|
low complexity region
|
875 |
922 |
N/A |
INTRINSIC |
|
low complexity region
|
941 |
953 |
N/A |
INTRINSIC |
|
| Meta Mutation Damage Score |
0.1215 |
| Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.6%
- 10x: 97.0%
- 20x: 94.7%
|
| Validation Efficiency |
97% (66/68) |
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the C-type lectin domain containing family. Single nucleotide polymorphisms in introns of this gene have been associated with diabetes mellitus, multiple sclerosis and rheumatoid arthritis. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Aug 2011]
PHENOTYPE: Homozygotes for a spontaneous mutation have a curved tail, small body size, squinting eyes, crooked digits that curve outward, and premature death. [provided by MGI curators]
|
| Allele List at MGI |
All alleles(13) : Gene trapped(13)
|
| Other mutations in this stock |
Total: 59 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Actn3 |
TGCGCAGC |
T |
19: 4,915,372 (GRCm39) |
|
probably null |
Het |
| Adamts1 |
A |
T |
16: 85,596,497 (GRCm39) |
C117* |
probably null |
Het |
| Adgrg6 |
A |
T |
10: 14,302,730 (GRCm39) |
Y894* |
probably null |
Het |
| Alas1 |
G |
T |
9: 106,111,358 (GRCm39) |
L603I |
probably benign |
Het |
| Arhgap21 |
G |
T |
2: 20,885,897 (GRCm39) |
R427S |
probably damaging |
Het |
| Arhgef25 |
A |
T |
10: 127,023,143 (GRCm39) |
V88D |
probably benign |
Het |
| Bdp1 |
T |
C |
13: 100,202,551 (GRCm39) |
Q691R |
possibly damaging |
Het |
| Bpifa6 |
T |
A |
2: 153,831,250 (GRCm39) |
I272N |
probably damaging |
Het |
| Cacybp |
T |
C |
1: 160,035,914 (GRCm39) |
|
probably benign |
Het |
| Capn3 |
T |
C |
2: 120,325,777 (GRCm39) |
|
probably benign |
Het |
| Ccdc47 |
C |
T |
11: 106,101,176 (GRCm39) |
R162Q |
probably benign |
Het |
| Cideb |
A |
C |
14: 55,995,748 (GRCm39) |
M1R |
probably null |
Het |
| Crebbp |
C |
T |
16: 3,925,322 (GRCm39) |
R760H |
probably damaging |
Het |
| Cyp2c23 |
A |
C |
19: 44,004,103 (GRCm39) |
|
probably null |
Het |
| Cyp3a13 |
T |
G |
5: 137,897,243 (GRCm39) |
D357A |
probably damaging |
Het |
| Dip2b |
C |
T |
15: 100,103,054 (GRCm39) |
|
probably benign |
Het |
| Ecm2 |
A |
T |
13: 49,681,210 (GRCm39) |
R448S |
possibly damaging |
Het |
| Edil3 |
T |
C |
13: 89,279,891 (GRCm39) |
Y190H |
probably damaging |
Het |
| Eps8l1 |
T |
G |
7: 4,473,160 (GRCm39) |
|
probably null |
Het |
| Eps8l3 |
A |
T |
3: 107,791,301 (GRCm39) |
K280* |
probably null |
Het |
| Fam184a |
A |
G |
10: 53,509,753 (GRCm39) |
F1137L |
probably damaging |
Het |
| Fmn2 |
A |
T |
1: 174,526,344 (GRCm39) |
R1388* |
probably null |
Het |
| Glt8d2 |
T |
C |
10: 82,488,516 (GRCm39) |
K318R |
probably benign |
Het |
| Herc2 |
A |
T |
7: 55,853,578 (GRCm39) |
K3690I |
probably damaging |
Het |
| Ifi206 |
T |
A |
1: 173,308,599 (GRCm39) |
I466F |
possibly damaging |
Het |
| Jade2 |
T |
C |
11: 51,709,434 (GRCm39) |
K525R |
probably benign |
Het |
| Kmt2a |
A |
T |
9: 44,759,633 (GRCm39) |
F772I |
probably damaging |
Het |
| Lipi |
A |
G |
16: 75,352,757 (GRCm39) |
V360A |
possibly damaging |
Het |
| Mbl1 |
C |
T |
14: 40,879,153 (GRCm39) |
S108L |
possibly damaging |
Het |
| Mmp1b |
T |
C |
9: 7,384,897 (GRCm39) |
I251V |
possibly damaging |
Het |
| Mrpl23 |
A |
G |
7: 142,089,874 (GRCm39) |
T25A |
probably damaging |
Het |
| Mto1 |
T |
A |
9: 78,360,109 (GRCm39) |
M199K |
probably benign |
Het |
| Nes |
A |
T |
3: 87,884,309 (GRCm39) |
N812I |
probably damaging |
Het |
| Nfkbie |
T |
A |
17: 45,871,132 (GRCm39) |
D261E |
probably benign |
Het |
| Or7e173 |
T |
C |
9: 19,938,355 (GRCm39) |
Y293C |
probably damaging |
Het |
| Pakap |
G |
A |
4: 57,856,062 (GRCm39) |
V505I |
probably benign |
Het |
| Pakap |
T |
A |
4: 57,856,434 (GRCm39) |
Y588N |
probably damaging |
Het |
| Papola |
A |
G |
12: 105,772,754 (GRCm39) |
I114V |
possibly damaging |
Het |
| Pappa |
T |
G |
4: 65,254,017 (GRCm39) |
|
probably null |
Het |
| Pcdh7 |
T |
A |
5: 57,877,529 (GRCm39) |
D361E |
probably damaging |
Het |
| Pick1 |
A |
G |
15: 79,133,040 (GRCm39) |
T367A |
probably benign |
Het |
| Plbd2 |
A |
G |
5: 120,632,547 (GRCm39) |
Y152H |
probably damaging |
Het |
| Ppfia2 |
A |
T |
10: 106,671,562 (GRCm39) |
E424D |
possibly damaging |
Het |
| Rab7b |
C |
T |
1: 131,626,164 (GRCm39) |
T64I |
probably damaging |
Het |
| Rarb |
T |
A |
14: 16,434,249 (GRCm38) |
I310F |
possibly damaging |
Het |
| Rdh16f2 |
C |
T |
10: 127,712,943 (GRCm39) |
P314S |
possibly damaging |
Het |
| Rpain |
A |
T |
11: 70,868,516 (GRCm39) |
|
probably null |
Het |
| Rufy3 |
T |
C |
5: 88,788,518 (GRCm39) |
*488Q |
probably null |
Het |
| Sash1 |
G |
A |
10: 8,621,950 (GRCm39) |
T398I |
probably damaging |
Het |
| Scara5 |
CG |
C |
14: 65,997,111 (GRCm39) |
|
probably null |
Het |
| Scrn1 |
T |
A |
6: 54,489,048 (GRCm39) |
I358F |
probably benign |
Het |
| Stam2 |
G |
A |
2: 52,626,305 (GRCm39) |
|
probably benign |
Het |
| Thbs1 |
G |
T |
2: 117,943,636 (GRCm39) |
D85Y |
possibly damaging |
Het |
| Thoc2l |
T |
A |
5: 104,666,225 (GRCm39) |
I249N |
probably damaging |
Het |
| Trp53 |
T |
C |
11: 69,479,146 (GRCm39) |
|
probably benign |
Het |
| Ttn |
A |
T |
2: 76,641,587 (GRCm39) |
L5176Q |
possibly damaging |
Het |
| Vmn1r223 |
A |
G |
13: 23,433,675 (GRCm39) |
R90G |
probably benign |
Het |
| Zfp521 |
A |
T |
18: 13,977,144 (GRCm39) |
Y1090N |
probably damaging |
Het |
| Zfp677 |
T |
C |
17: 21,618,175 (GRCm39) |
C411R |
probably damaging |
Het |
|
| Other mutations in Clec16a |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00494:Clec16a
|
APN |
16 |
10,413,760 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL00503:Clec16a
|
APN |
16 |
10,512,513 (GRCm39) |
missense |
possibly damaging |
0.53 |
|
IGL01622:Clec16a
|
APN |
16 |
10,395,774 (GRCm39) |
missense |
possibly damaging |
0.47 |
|
IGL01623:Clec16a
|
APN |
16 |
10,395,774 (GRCm39) |
missense |
possibly damaging |
0.47 |
|
IGL02008:Clec16a
|
APN |
16 |
10,398,824 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02082:Clec16a
|
APN |
16 |
10,432,432 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL02468:Clec16a
|
APN |
16 |
10,559,742 (GRCm39) |
missense |
probably benign |
0.13 |
|
IGL02499:Clec16a
|
APN |
16 |
10,512,540 (GRCm39) |
missense |
probably benign |
0.25 |
|
IGL02671:Clec16a
|
APN |
16 |
10,445,245 (GRCm39) |
missense |
probably benign |
0.19 |
|
G5030:Clec16a
|
UTSW |
16 |
10,389,425 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL03055:Clec16a
|
UTSW |
16 |
10,559,645 (GRCm39) |
missense |
probably damaging |
0.99 |
|
P0014:Clec16a
|
UTSW |
16 |
10,378,020 (GRCm39) |
splice site |
probably benign |
|
|
R0183:Clec16a
|
UTSW |
16 |
10,377,886 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0268:Clec16a
|
UTSW |
16 |
10,462,692 (GRCm39) |
nonsense |
probably null |
|
|
R0512:Clec16a
|
UTSW |
16 |
10,432,444 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0556:Clec16a
|
UTSW |
16 |
10,456,649 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
R0944:Clec16a
|
UTSW |
16 |
10,506,510 (GRCm39) |
splice site |
probably benign |
|
|
R1456:Clec16a
|
UTSW |
16 |
10,509,419 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1497:Clec16a
|
UTSW |
16 |
10,453,123 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1580:Clec16a
|
UTSW |
16 |
10,413,762 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1933:Clec16a
|
UTSW |
16 |
10,506,403 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R2075:Clec16a
|
UTSW |
16 |
10,559,480 (GRCm39) |
missense |
probably benign |
0.09 |
|
R2269:Clec16a
|
UTSW |
16 |
10,462,650 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R2504:Clec16a
|
UTSW |
16 |
10,377,551 (GRCm39) |
intron |
probably benign |
|
|
R3011:Clec16a
|
UTSW |
16 |
10,428,975 (GRCm39) |
missense |
probably benign |
0.01 |
|
R4331:Clec16a
|
UTSW |
16 |
10,389,533 (GRCm39) |
missense |
probably benign |
|
|
R4616:Clec16a
|
UTSW |
16 |
10,462,747 (GRCm39) |
critical splice donor site |
probably null |
|
|
R4775:Clec16a
|
UTSW |
16 |
10,456,778 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4969:Clec16a
|
UTSW |
16 |
10,386,375 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5053:Clec16a
|
UTSW |
16 |
10,394,461 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5170:Clec16a
|
UTSW |
16 |
10,559,655 (GRCm39) |
missense |
probably benign |
|
|
R5329:Clec16a
|
UTSW |
16 |
10,549,543 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5331:Clec16a
|
UTSW |
16 |
10,549,543 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5332:Clec16a
|
UTSW |
16 |
10,549,543 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5417:Clec16a
|
UTSW |
16 |
10,549,543 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5419:Clec16a
|
UTSW |
16 |
10,549,543 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R5457:Clec16a
|
UTSW |
16 |
10,363,396 (GRCm39) |
splice site |
probably null |
|
|
R5623:Clec16a
|
UTSW |
16 |
10,428,985 (GRCm39) |
missense |
probably benign |
0.07 |
|
R6057:Clec16a
|
UTSW |
16 |
10,447,951 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6184:Clec16a
|
UTSW |
16 |
10,390,792 (GRCm39) |
splice site |
probably null |
|
|
R6235:Clec16a
|
UTSW |
16 |
10,512,499 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6260:Clec16a
|
UTSW |
16 |
10,512,712 (GRCm39) |
intron |
probably benign |
|
|
R6292:Clec16a
|
UTSW |
16 |
10,378,015 (GRCm39) |
critical splice donor site |
probably null |
|
|
R6318:Clec16a
|
UTSW |
16 |
10,448,652 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6894:Clec16a
|
UTSW |
16 |
10,462,718 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7340:Clec16a
|
UTSW |
16 |
10,398,827 (GRCm39) |
missense |
probably null |
0.21 |
|
R7432:Clec16a
|
UTSW |
16 |
10,506,419 (GRCm39) |
missense |
possibly damaging |
0.62 |
|
R7453:Clec16a
|
UTSW |
16 |
10,462,686 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7536:Clec16a
|
UTSW |
16 |
10,456,708 (GRCm39) |
missense |
possibly damaging |
0.90 |
|
R8207:Clec16a
|
UTSW |
16 |
10,512,574 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8207:Clec16a
|
UTSW |
16 |
10,445,312 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8423:Clec16a
|
UTSW |
16 |
10,394,527 (GRCm39) |
missense |
probably benign |
0.04 |
|
R8447:Clec16a
|
UTSW |
16 |
10,559,487 (GRCm39) |
missense |
probably benign |
0.09 |
|
R8700:Clec16a
|
UTSW |
16 |
10,506,422 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8855:Clec16a
|
UTSW |
16 |
10,462,731 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9143:Clec16a
|
UTSW |
16 |
10,428,964 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R9676:Clec16a
|
UTSW |
16 |
10,559,823 (GRCm39) |
missense |
probably benign |
0.03 |
|
| Predicted Primers |
PCR Primer
(F):5'- GCTCGTTCTGGCAAACATGC -3'
(R):5'- GTCATAGTCGAAACAAGGGGTC -3'
Sequencing Primer
(F):5'- CAGAGAAAAGTCCAGTCGAGTTGTC -3'
(R):5'- ACAAGGGGTCACAGGGTCC -3'
|
| Posted On |
2016-09-01 |
Incidental Mutation