Incidental Mutation 'R0458:Pappa'
ID 41289
Institutional Source Beutler Lab
Gene Symbol Pappa
Ensembl Gene ENSMUSG00000028370
Gene Name pregnancy-associated plasma protein A
Synonyms PAPP-A, PAG1, 8430414N03Rik, IGFBP-4ase
MMRRC Submission 038658-MU
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R0458 (G1)
Quality Score 225
Status Validated
Chromosome 4
Chromosomal Location 65042411-65275746 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 65074119 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Isoleucine to Methionine at position 224 (I224M)
Ref Sequence ENSEMBL: ENSMUSP00000081545 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000084501]
AlphaFold Q8R4K8
Predicted Effect probably damaging
Transcript: ENSMUST00000084501
AA Change: I224M

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)
SMART Domains Protein: ENSMUSP00000081545
Gene: ENSMUSG00000028370
AA Change: I224M

DomainStartEndE-ValueType
signal peptide 1 22 N/A INTRINSIC
low complexity region 24 66 N/A INTRINSIC
low complexity region 69 87 N/A INTRINSIC
LamGL 114 263 1.55e-54 SMART
NL 396 438 4.15e-8 SMART
NL 441 471 6.73e-1 SMART
Pfam:Peptidase_M43 500 657 2.5e-10 PFAM
Blast:FN3 669 929 1e-165 BLAST
CCP 1212 1277 1.39e-9 SMART
CCP 1282 1339 1.08e-6 SMART
CCP 1343 1407 1.64e-6 SMART
CCP 1412 1468 8.06e-6 SMART
NL 1544 1581 3.24e-10 SMART
low complexity region 1584 1591 N/A INTRINSIC
Meta Mutation Damage Score 0.1263 question?
Coding Region Coverage
  • 1x: 99.7%
  • 3x: 98.9%
  • 10x: 97.0%
  • 20x: 94.3%
Validation Efficiency 100% (79/79)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a secreted metalloproteinase which cleaves insulin-like growth factor binding proteins (IGFBPs). It is thought to be involved in local proliferative processes such as wound healing and bone remodeling. Low plasma level of this protein has been suggested as a biochemical marker for pregnancies with aneuploid fetuses. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous null mutants are smaller than normal with delayed ossification, but are otherwise normal and fertile. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 76 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
4933407L21Rik A G 1: 85,856,747 (GRCm39) E8G unknown Het
9130008F23Rik T C 17: 41,191,127 (GRCm39) T101A probably benign Het
Abcb8 C T 5: 24,611,231 (GRCm39) T455I probably benign Het
Abcb9 C A 5: 124,220,209 (GRCm39) probably null Het
Akp3 T G 1: 87,054,259 (GRCm39) Y265* probably null Het
Atp6v1b1 A T 6: 83,729,390 (GRCm39) D109V probably damaging Het
Aurka C A 2: 172,212,366 (GRCm39) E4* probably null Het
Cacna1g T A 11: 94,300,266 (GRCm39) Q2168L probably damaging Het
Cdc45 T A 16: 18,600,722 (GRCm39) probably benign Het
Cfap61 T C 2: 145,850,837 (GRCm39) V325A probably benign Het
Clasp2 T A 9: 113,735,292 (GRCm39) probably null Het
Crim1 T A 17: 78,620,655 (GRCm39) I365N probably damaging Het
Dcaf8 A G 1: 172,001,610 (GRCm39) N269S probably benign Het
Dnaaf5 T C 5: 139,147,633 (GRCm39) V399A possibly damaging Het
Ear2 A G 14: 44,340,705 (GRCm39) Y121C probably damaging Het
Eef2k T C 7: 120,502,513 (GRCm39) Y692H probably damaging Het
Elavl2 A T 4: 91,197,104 (GRCm39) probably benign Het
Epn2 C A 11: 61,437,281 (GRCm39) R97L possibly damaging Het
Fam243 T C 16: 92,117,995 (GRCm39) I98V probably benign Het
Fzd6 G A 15: 38,894,676 (GRCm39) A281T probably damaging Het
Garem2 T A 5: 30,319,180 (GRCm39) I214N probably damaging Het
Glg1 A G 8: 111,887,238 (GRCm39) probably benign Het
Golm1 T C 13: 59,812,178 (GRCm39) E48G probably damaging Het
Gpaa1 G T 15: 76,216,233 (GRCm39) R12L probably benign Het
Gstm1 T A 3: 107,924,679 (GRCm39) T34S probably benign Het
Gtf3c1 G A 7: 125,243,306 (GRCm39) P1766L possibly damaging Het
Herc1 A T 9: 66,383,663 (GRCm39) Q3709L probably benign Het
Hoxa13 CCG CCGCG 6: 52,237,618 (GRCm39) probably null Het
Icam1 A G 9: 20,939,157 (GRCm39) probably null Het
Itga9 T C 9: 118,510,096 (GRCm39) probably null Het
Kif15 T C 9: 122,838,424 (GRCm39) F1121L probably benign Het
Klhl30 T A 1: 91,288,718 (GRCm39) probably benign Het
Ldlrad1 T C 4: 107,073,387 (GRCm39) C141R probably damaging Het
Lemd2 T C 17: 27,409,627 (GRCm39) D508G probably damaging Het
Lilra5 A C 7: 4,241,218 (GRCm39) T52P probably benign Het
Lrtm2 G A 6: 119,294,229 (GRCm39) P301S probably damaging Het
Mcoln2 A G 3: 145,855,768 (GRCm39) probably benign Het
Mkrn2os A G 6: 115,563,631 (GRCm39) S135P probably damaging Het
Mlxipl T C 5: 135,162,224 (GRCm39) V607A probably benign Het
Mmadhc T C 2: 50,171,173 (GRCm39) Y213C probably benign Het
Mpo C A 11: 87,687,123 (GRCm39) A223E probably benign Het
Mthfd2l C G 5: 91,168,036 (GRCm39) I310M probably damaging Het
Muc5b C A 7: 141,418,709 (GRCm39) A3885D probably benign Het
Mvp A G 7: 126,597,663 (GRCm39) W152R probably damaging Het
Nmur2 A T 11: 55,931,394 (GRCm39) F106I possibly damaging Het
Nr3c2 T A 8: 77,636,167 (GRCm39) F423I probably damaging Het
Or1l8 A G 2: 36,817,349 (GRCm39) V259A probably damaging Het
Or5m5 A G 2: 85,814,600 (GRCm39) S139G probably benign Het
Or8c16 G A 9: 38,130,344 (GRCm39) C75Y probably damaging Het
Or9q1 G T 19: 13,805,593 (GRCm39) H56N probably benign Het
Prex1 A C 2: 166,427,743 (GRCm39) S800A probably damaging Het
Prkaca T C 8: 84,721,911 (GRCm39) probably benign Het
Ptpru A T 4: 131,526,986 (GRCm39) V662E possibly damaging Het
Rabep1 T A 11: 70,777,824 (GRCm39) probably null Het
Rbms2 C T 10: 127,987,058 (GRCm39) C50Y probably damaging Het
Rd3 C T 1: 191,709,414 (GRCm39) P25S probably damaging Het
Rnf148 T G 6: 23,654,256 (GRCm39) I247L probably benign Het
Sf3b3 A G 8: 111,538,768 (GRCm39) probably benign Het
Slc35c1 A T 2: 92,284,858 (GRCm39) F252Y probably damaging Het
Slc38a11 T C 2: 65,193,813 (GRCm39) probably null Het
Snx6 G T 12: 54,814,921 (GRCm39) Y17* probably null Het
Sox6 C A 7: 115,089,029 (GRCm39) R611L probably damaging Het
Spata13 G A 14: 60,929,492 (GRCm39) R350H probably damaging Het
Sppl2a G T 2: 126,746,879 (GRCm39) A483D probably damaging Het
Stat1 C T 1: 52,188,211 (GRCm39) probably benign Het
Tab2 A T 10: 7,795,319 (GRCm39) Y314N probably damaging Het
Tor1aip1 T C 1: 155,906,153 (GRCm39) N213S probably damaging Het
Trim39 T C 17: 36,572,404 (GRCm39) K300E probably damaging Het
Tubal3 T C 13: 3,983,137 (GRCm39) S306P probably damaging Het
Ufm1 A G 3: 53,768,655 (GRCm39) L33P probably damaging Het
Washc4 G A 10: 83,382,663 (GRCm39) V26I possibly damaging Het
Wfs1 A G 5: 37,126,013 (GRCm39) Y293H probably damaging Het
Zbtb41 T C 1: 139,351,214 (GRCm39) V109A probably damaging Het
Zfp667 T C 7: 6,307,844 (GRCm39) S171P probably benign Het
Zkscan5 T A 5: 145,142,281 (GRCm39) H59Q probably damaging Het
Zswim8 C T 14: 20,768,965 (GRCm39) R1128W probably damaging Het
Other mutations in Pappa
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01096:Pappa APN 4 65,107,553 (GRCm39) missense probably damaging 1.00
IGL01340:Pappa APN 4 65,242,109 (GRCm39) missense possibly damaging 0.49
IGL01482:Pappa APN 4 65,074,271 (GRCm39) missense probably benign 0.18
IGL01485:Pappa APN 4 65,107,536 (GRCm39) missense probably damaging 0.96
IGL01759:Pappa APN 4 65,123,395 (GRCm39) splice site probably null
IGL01860:Pappa APN 4 65,123,329 (GRCm39) missense possibly damaging 0.50
IGL01990:Pappa APN 4 65,074,924 (GRCm39) splice site probably benign
IGL02089:Pappa APN 4 65,074,361 (GRCm39) missense possibly damaging 0.75
IGL02153:Pappa APN 4 65,215,674 (GRCm39) missense probably damaging 0.96
IGL02184:Pappa APN 4 65,258,928 (GRCm39) missense possibly damaging 0.82
IGL02324:Pappa APN 4 65,115,045 (GRCm39) missense probably damaging 0.99
IGL02542:Pappa APN 4 65,094,518 (GRCm39) missense probably damaging 1.00
IGL02556:Pappa APN 4 65,074,863 (GRCm39) missense possibly damaging 0.56
IGL02698:Pappa APN 4 65,099,257 (GRCm39) missense probably damaging 1.00
IGL02903:Pappa APN 4 65,180,217 (GRCm39) missense probably damaging 1.00
IGL02974:Pappa APN 4 65,123,172 (GRCm39) missense probably damaging 1.00
IGL03107:Pappa APN 4 65,122,940 (GRCm39) missense probably damaging 1.00
IGL03376:Pappa APN 4 65,115,071 (GRCm39) missense probably benign 0.01
caer UTSW 4 65,043,128 (GRCm39) missense probably damaging 0.98
Maennel UTSW 4 65,232,824 (GRCm39) missense probably benign 0.05
maennelein UTSW 4 65,233,033 (GRCm39) splice site probably null
mama UTSW 4 65,123,104 (GRCm39) missense possibly damaging 0.94
Revisitation UTSW 4 65,212,705 (GRCm39) missense probably damaging 0.96
Sesquester UTSW 4 65,074,612 (GRCm39) missense possibly damaging 0.66
untersuchen UTSW 4 65,215,494 (GRCm39) missense probably damaging 1.00
IGL02980:Pappa UTSW 4 65,226,011 (GRCm39) missense probably benign 0.25
PIT4498001:Pappa UTSW 4 65,234,469 (GRCm39) missense probably damaging 1.00
R0077:Pappa UTSW 4 65,226,049 (GRCm39) missense probably damaging 1.00
R0390:Pappa UTSW 4 65,269,850 (GRCm39) splice site probably null
R0883:Pappa UTSW 4 65,107,552 (GRCm39) nonsense probably null
R0946:Pappa UTSW 4 65,233,029 (GRCm39) critical splice donor site probably null
R1228:Pappa UTSW 4 65,258,926 (GRCm39) missense probably damaging 1.00
R1327:Pappa UTSW 4 65,269,840 (GRCm39) splice site probably benign
R1489:Pappa UTSW 4 65,099,185 (GRCm39) missense possibly damaging 0.85
R1619:Pappa UTSW 4 65,094,466 (GRCm39) missense probably damaging 1.00
R1856:Pappa UTSW 4 65,258,980 (GRCm39) missense probably damaging 1.00
R2047:Pappa UTSW 4 65,149,378 (GRCm39) splice site probably benign
R2102:Pappa UTSW 4 65,234,465 (GRCm39) nonsense probably null
R2127:Pappa UTSW 4 65,215,494 (GRCm39) missense probably damaging 1.00
R2143:Pappa UTSW 4 65,099,186 (GRCm39) nonsense probably null
R2144:Pappa UTSW 4 65,099,186 (GRCm39) nonsense probably null
R2166:Pappa UTSW 4 65,074,682 (GRCm39) missense probably damaging 1.00
R2167:Pappa UTSW 4 65,074,682 (GRCm39) missense probably damaging 1.00
R2168:Pappa UTSW 4 65,074,682 (GRCm39) missense probably damaging 1.00
R2178:Pappa UTSW 4 65,269,924 (GRCm39) missense probably benign 0.00
R2504:Pappa UTSW 4 65,099,126 (GRCm39) nonsense probably null
R4043:Pappa UTSW 4 65,232,824 (GRCm39) missense probably benign 0.05
R4289:Pappa UTSW 4 65,074,100 (GRCm39) missense probably benign 0.19
R4415:Pappa UTSW 4 65,223,532 (GRCm39) missense probably benign 0.00
R4529:Pappa UTSW 4 65,149,419 (GRCm39) missense probably benign
R4620:Pappa UTSW 4 65,245,265 (GRCm39) missense probably benign 0.43
R4657:Pappa UTSW 4 65,233,033 (GRCm39) splice site probably null
R4658:Pappa UTSW 4 65,233,033 (GRCm39) splice site probably null
R5074:Pappa UTSW 4 65,123,365 (GRCm39) missense probably benign 0.15
R5200:Pappa UTSW 4 65,074,076 (GRCm39) missense probably damaging 1.00
R5420:Pappa UTSW 4 65,254,017 (GRCm39) critical splice donor site probably null
R5469:Pappa UTSW 4 65,123,389 (GRCm39) missense probably benign 0.01
R5651:Pappa UTSW 4 65,074,589 (GRCm39) missense probably damaging 0.99
R5725:Pappa UTSW 4 65,107,647 (GRCm39) missense probably damaging 1.00
R5941:Pappa UTSW 4 65,232,830 (GRCm39) missense possibly damaging 0.52
R6002:Pappa UTSW 4 65,215,645 (GRCm39) missense probably damaging 0.99
R6252:Pappa UTSW 4 65,107,649 (GRCm39) missense probably benign 0.02
R6303:Pappa UTSW 4 65,122,891 (GRCm39) missense probably damaging 1.00
R6322:Pappa UTSW 4 65,232,896 (GRCm39) missense probably damaging 1.00
R6431:Pappa UTSW 4 65,074,701 (GRCm39) missense probably damaging 1.00
R6462:Pappa UTSW 4 65,043,128 (GRCm39) missense probably damaging 0.98
R6484:Pappa UTSW 4 65,232,896 (GRCm39) missense probably damaging 1.00
R6537:Pappa UTSW 4 65,215,519 (GRCm39) missense probably damaging 0.99
R6578:Pappa UTSW 4 65,074,374 (GRCm39) missense possibly damaging 0.48
R6704:Pappa UTSW 4 65,123,161 (GRCm39) missense probably damaging 1.00
R6789:Pappa UTSW 4 65,099,278 (GRCm39) missense probably damaging 1.00
R7023:Pappa UTSW 4 65,269,955 (GRCm39) missense probably benign 0.00
R7139:Pappa UTSW 4 65,107,687 (GRCm39) missense probably benign 0.30
R7158:Pappa UTSW 4 65,123,104 (GRCm39) missense possibly damaging 0.94
R7165:Pappa UTSW 4 65,180,110 (GRCm39) missense probably damaging 1.00
R7196:Pappa UTSW 4 65,242,128 (GRCm39) splice site probably null
R7410:Pappa UTSW 4 65,253,956 (GRCm39) missense probably damaging 1.00
R7457:Pappa UTSW 4 65,107,503 (GRCm39) missense probably damaging 1.00
R7506:Pappa UTSW 4 65,149,419 (GRCm39) missense probably benign 0.00
R7546:Pappa UTSW 4 65,074,352 (GRCm39) missense possibly damaging 0.48
R7975:Pappa UTSW 4 65,212,705 (GRCm39) missense probably damaging 0.96
R8111:Pappa UTSW 4 65,180,229 (GRCm39) missense probably damaging 0.99
R8260:Pappa UTSW 4 65,234,419 (GRCm39) missense probably damaging 0.99
R8347:Pappa UTSW 4 65,245,302 (GRCm39) missense probably damaging 1.00
R8520:Pappa UTSW 4 65,254,001 (GRCm39) missense probably benign 0.01
R8812:Pappa UTSW 4 65,123,166 (GRCm39) missense possibly damaging 0.94
R8815:Pappa UTSW 4 65,099,347 (GRCm39) missense probably benign 0.00
R9008:Pappa UTSW 4 65,074,426 (GRCm39) missense probably damaging 1.00
R9162:Pappa UTSW 4 65,123,040 (GRCm39) missense probably damaging 1.00
R9170:Pappa UTSW 4 65,258,962 (GRCm39) missense probably damaging 1.00
R9205:Pappa UTSW 4 65,074,612 (GRCm39) missense possibly damaging 0.66
R9336:Pappa UTSW 4 65,042,918 (GRCm39) missense unknown
R9389:Pappa UTSW 4 65,099,125 (GRCm39) missense probably damaging 1.00
R9781:Pappa UTSW 4 65,043,104 (GRCm39) missense possibly damaging 0.89
RF006:Pappa UTSW 4 65,242,110 (GRCm39) missense probably benign 0.00
RF020:Pappa UTSW 4 65,123,282 (GRCm39) missense possibly damaging 0.77
X0058:Pappa UTSW 4 65,074,469 (GRCm39) missense probably damaging 1.00
X0060:Pappa UTSW 4 65,043,178 (GRCm39) missense probably benign 0.00
Z1177:Pappa UTSW 4 65,225,995 (GRCm39) missense probably damaging 1.00
Predicted Primers PCR Primer
(F):5'- GGCATTCACACCACCAGTGATCAAG -3'
(R):5'- TGTTGTCACACAGTGTCTGCCC -3'

Sequencing Primer
(F):5'- AACAGAGATCCACGCTACTTTTTC -3'
(R):5'- GGGCATTGCTGAATTCCAC -3'
Posted On 2013-05-23