Incidental Mutation 'R5046:Nop9'
ID 394394
Institutional Source Beutler Lab
Gene Symbol Nop9
Ensembl Gene ENSMUSG00000019297
Gene Name NOP9 nucleolar protein
Synonyms 2610027L16Rik
MMRRC Submission 042636-MU
Accession Numbers
Essential gene? Probably essential (E-score: 0.946) question?
Stock # R5046 (G1)
Quality Score 132
Status Validated
Chromosome 14
Chromosomal Location 55983150-55992957 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 55983397 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Histidine to Arginine at position 56 (H56R)
Ref Sequence ENSEMBL: ENSMUSP00000019441 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000002403] [ENSMUST00000019441]
AlphaFold Q8BMC4
Predicted Effect probably benign
Transcript: ENSMUST00000002403
SMART Domains Protein: ENSMUSP00000002403
Gene: ENSMUSG00000002332

DomainStartEndE-ValueType
Pfam:KR 8 114 1.5e-8 PFAM
Pfam:adh_short 8 209 2.4e-41 PFAM
Pfam:adh_short_C2 14 242 5.1e-10 PFAM
Predicted Effect possibly damaging
Transcript: ENSMUST00000019441
AA Change: H56R

PolyPhen 2 Score 0.896 (Sensitivity: 0.82; Specificity: 0.94)
SMART Domains Protein: ENSMUSP00000019441
Gene: ENSMUSG00000019297
AA Change: H56R

DomainStartEndE-ValueType
low complexity region 11 55 N/A INTRINSIC
Blast:Pumilio 92 127 3e-15 BLAST
Pumilio 189 220 2.74e2 SMART
Blast:Pumilio 263 298 3e-14 BLAST
Pumilio 314 349 4.38e1 SMART
Pumilio 351 387 1.03e1 SMART
Pumilio 509 546 1.72e1 SMART
Pumilio 547 582 9.17e0 SMART
Predicted Effect noncoding transcript
Transcript: ENSMUST00000128802
Predicted Effect noncoding transcript
Transcript: ENSMUST00000227300
Meta Mutation Damage Score 0.0788 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.5%
  • 10x: 96.8%
  • 20x: 94.1%
Validation Efficiency 100% (52/52)
Allele List at MGI
Other mutations in this stock
Total: 42 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Acsm4 C A 7: 119,302,597 (GRCm39) H241N probably damaging Het
Arhgap32 G A 9: 32,168,095 (GRCm39) A693T probably damaging Het
B4galnt3 G T 6: 120,191,759 (GRCm39) A658D probably damaging Het
Car12 G A 9: 66,653,895 (GRCm39) E84K probably benign Het
Crocc2 T A 1: 93,133,624 (GRCm39) S969T probably damaging Het
Crym A G 7: 119,794,667 (GRCm39) V184A possibly damaging Het
Cryzl2 T C 1: 157,292,583 (GRCm39) C122R probably damaging Het
Defb30 T C 14: 63,273,463 (GRCm39) E49G probably benign Het
Dnah3 A G 7: 119,550,803 (GRCm39) L3161P probably damaging Het
Dnajc5g A G 5: 31,267,036 (GRCm39) N104S probably benign Het
Fcgr1 T G 3: 96,194,302 (GRCm39) K195T probably damaging Het
Gal C T 19: 3,461,167 (GRCm39) R89H probably damaging Het
Gcfc2 C T 6: 81,925,316 (GRCm39) A577V probably benign Het
Gm5116 A C 7: 32,195,379 (GRCm39) noncoding transcript Het
Golga3 A T 5: 110,340,806 (GRCm39) Q540L probably damaging Het
Hectd1 T C 12: 51,797,171 (GRCm39) E2184G probably damaging Het
Hspa12a T C 19: 58,787,977 (GRCm39) D615G probably damaging Het
Igkv14-130 A T 6: 67,768,465 (GRCm39) Y107F probably damaging Het
Ldlr T A 9: 21,657,203 (GRCm39) probably null Het
Lin9 T A 1: 180,496,763 (GRCm39) L351I probably benign Het
Lrrc37a A T 11: 103,389,066 (GRCm39) S2120T unknown Het
Mtfmt G T 9: 65,346,897 (GRCm39) V164F probably damaging Het
Nampt T C 12: 32,883,037 (GRCm39) V74A probably damaging Het
Ndufc2 G T 7: 97,056,871 (GRCm39) R120L probably damaging Het
Neo1 A T 9: 58,801,194 (GRCm39) V1156D possibly damaging Het
Nlrp1b G A 11: 71,050,898 (GRCm39) P1065S possibly damaging Het
Or4k41 A T 2: 111,279,934 (GRCm39) T150S probably benign Het
Or6c75 A T 10: 129,337,178 (GRCm39) M142L possibly damaging Het
Pign A T 1: 105,449,798 (GRCm39) N909K possibly damaging Het
Prex1 A G 2: 166,414,883 (GRCm39) V304A probably benign Het
Racgap1 G A 15: 99,526,643 (GRCm39) R307W probably damaging Het
Rap1gds1 C A 3: 138,661,181 (GRCm39) E399* probably null Het
Rwdd4a G A 8: 47,995,837 (GRCm39) probably null Het
Sanbr A C 11: 23,570,354 (GRCm39) M182R probably benign Het
Scp2 T C 4: 107,928,488 (GRCm39) T401A probably benign Het
Sdha A G 13: 74,475,452 (GRCm39) F526S probably damaging Het
Shroom1 T A 11: 53,354,872 (GRCm39) L264Q probably benign Het
Sorl1 T C 9: 41,907,590 (GRCm39) T1466A probably benign Het
Trpm2 C T 10: 77,801,852 (GRCm39) C71Y probably damaging Het
Ugt2b34 G A 5: 87,052,246 (GRCm39) S250L probably benign Het
Vmn2r88 A G 14: 51,650,638 (GRCm39) D117G probably benign Het
Wdr73 A T 7: 80,542,173 (GRCm39) probably benign Het
Other mutations in Nop9
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL02156:Nop9 APN 14 55,990,740 (GRCm39) nonsense probably null
IGL02803:Nop9 APN 14 55,987,533 (GRCm39) missense probably benign
R0443:Nop9 UTSW 14 55,991,205 (GRCm39) missense probably benign 0.00
R1766:Nop9 UTSW 14 55,989,591 (GRCm39) missense possibly damaging 0.94
R1785:Nop9 UTSW 14 55,988,599 (GRCm39) missense probably damaging 1.00
R1786:Nop9 UTSW 14 55,988,599 (GRCm39) missense probably damaging 1.00
R3015:Nop9 UTSW 14 55,988,631 (GRCm39) missense probably benign 0.00
R4784:Nop9 UTSW 14 55,983,859 (GRCm39) small deletion probably benign
R5787:Nop9 UTSW 14 55,983,791 (GRCm39) missense possibly damaging 0.93
R6271:Nop9 UTSW 14 55,991,198 (GRCm39) missense probably damaging 1.00
R6379:Nop9 UTSW 14 55,983,249 (GRCm39) missense possibly damaging 0.83
R6943:Nop9 UTSW 14 55,990,270 (GRCm39) missense probably benign 0.25
R7562:Nop9 UTSW 14 55,986,809 (GRCm39) missense probably benign 0.01
R8916:Nop9 UTSW 14 55,991,101 (GRCm39) missense probably benign 0.17
R8992:Nop9 UTSW 14 55,983,438 (GRCm39) missense possibly damaging 0.86
R9070:Nop9 UTSW 14 55,990,757 (GRCm39) missense probably damaging 1.00
R9206:Nop9 UTSW 14 55,987,592 (GRCm39) critical splice donor site probably null
R9385:Nop9 UTSW 14 55,988,584 (GRCm39) missense probably benign 0.01
Predicted Primers PCR Primer
(F):5'- TCAAAGATAGCCCTGGAGTTCC -3'
(R):5'- GAGGAGAAGACTTACCCATCAC -3'

Sequencing Primer
(F):5'- TGAACGGCTGGTCCCAAAG -3'
(R):5'- GGAGAAGACTTACCCATCACTTAGC -3'
Posted On 2016-06-15