Mutagenetix > Incidental Mutation

Incidental Mutation 'R0436:Trim43a'

39014

Institutional Source

Beutler Lab

Gene Symbol

Trim43a

Ensembl Gene

ENSMUSG00000090693

Gene Name

tripartite motif-containing 43A

Synonyms

Gm6021

MMRRC Submission

038637-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.118) question?

Stock #

R0436 (G1)

Quality Score

184

Status

Validated

Chromosome

Chromosomal Location

88462944-88470872 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 88470240 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Tryptophan to Arginine at position 349 (W349R)

Ref Sequence

ENSEMBL: ENSMUSP00000127527 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000164661] [ENSMUST00000215498] [ENSMUST00000216686]

AlphaFold

Q3TL54

Predicted Effect

probably damaging
Transcript: ENSMUST00000164661
AA Change: W349R

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000127527
Gene: ENSMUSG00000090693
AA Change: W349R

Domain	Start	End	E-Value	Type
RING	16	56	9.6e-7	SMART
Blast:BBOX	88	129	1e-7	BLAST
PDB:2VOK\|B	328	445	5e-14	PDB
Blast:SPRY	335	441	1e-19	BLAST

Predicted Effect

probably benign
Transcript: ENSMUST00000215498

Predicted Effect

probably benign
Transcript: ENSMUST00000216686

Meta Mutation Damage Score

0.8314

Coding Region Coverage

1x: 99.2%
3x: 98.4%
10x: 96.4%
20x: 93.4%

Validation Efficiency

100% (66/66)

Allele List at MGI

Other mutations in this stock

Total: 51 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
4933430I17Rik	T	C	4: 62,461,682 (GRCm39)		probably benign	Het
Abcb10	C	T	8: 124,697,740 (GRCm39)	G195S	probably benign	Het
Adrb2	A	G	18: 62,312,624 (GRCm39)	V67A	possibly damaging	Het
Alx4	A	T	2: 93,498,702 (GRCm39)	K145*	probably null	Het
Arl8a	G	A	1: 135,074,718 (GRCm39)	M1I	probably null	Het
Btbd16	G	A	7: 130,387,783 (GRCm39)	S134N	probably benign	Het
Ccdc136	T	A	6: 29,414,933 (GRCm39)	L474Q	probably damaging	Het
Cebpz	A	G	17: 79,243,079 (GRCm39)	Y192H	probably benign	Het
Cep95	A	G	11: 106,709,511 (GRCm39)	Q109R	probably null	Het
Cfap54	G	T	10: 92,874,837 (GRCm39)	Q520K	possibly damaging	Het
Cog2	C	T	8: 125,275,253 (GRCm39)		probably benign	Het
Cul1	A	G	6: 47,500,707 (GRCm39)	N702S	probably benign	Het
D430041D05Rik	G	C	2: 103,998,295 (GRCm39)	P1836R	probably damaging	Het
Dmxl2	T	C	9: 54,291,034 (GRCm39)	D2472G	probably damaging	Het
Drgx	T	C	14: 32,330,040 (GRCm39)	F81S	probably damaging	Het
Ect2	A	G	3: 27,204,244 (GRCm39)	F22L	probably benign	Het
Ehd4	A	T	2: 119,932,822 (GRCm39)	D201E	probably damaging	Het
Eif4ebp3	A	G	18: 36,797,354 (GRCm39)		probably null	Het
Exd2	T	C	12: 80,537,544 (GRCm39)		probably benign	Het
Gtf2a1	A	C	12: 91,535,047 (GRCm39)		probably null	Het
H2-DMb1	A	G	17: 34,378,630 (GRCm39)	Y256C	probably damaging	Het
Haus6	T	C	4: 86,504,044 (GRCm39)	R527G	probably benign	Het
Helb	C	T	10: 119,930,117 (GRCm39)		probably benign	Het
Hhatl	C	T	9: 121,617,828 (GRCm39)	A254T	probably benign	Het
Hk1	A	T	10: 62,135,054 (GRCm39)		probably benign	Het
Hmcn2	A	G	2: 31,295,624 (GRCm39)	K2611R	probably damaging	Het
Hrc	A	G	7: 44,985,557 (GRCm39)	H236R	possibly damaging	Het
Hunk	T	A	16: 90,261,042 (GRCm39)	Y178N	probably damaging	Het
Iftap	T	C	2: 101,440,864 (GRCm39)		probably benign	Het
Jakmip2	G	A	18: 43,691,234 (GRCm39)	Q616*	probably null	Het
Kcnh4	C	T	11: 100,637,758 (GRCm39)	G633E	probably benign	Het
Msantd4	C	T	9: 4,385,180 (GRCm39)	R302C	probably damaging	Het
Nae1	T	C	8: 105,249,868 (GRCm39)		probably benign	Het
Nek4	C	T	14: 30,692,429 (GRCm39)	L293F	probably damaging	Het
Odf2l	C	T	3: 144,831,877 (GRCm39)	T44I	possibly damaging	Het
Or52s19	A	G	7: 103,007,948 (GRCm39)	V151A	possibly damaging	Het
Otog	G	A	7: 45,915,360 (GRCm39)		probably benign	Het
Ppp1r21	C	T	17: 88,873,117 (GRCm39)	T425I	possibly damaging	Het
Prrc2b	A	G	2: 32,120,672 (GRCm39)	E2204G	probably damaging	Het
Prrc2c	A	C	1: 162,532,883 (GRCm39)		probably benign	Het
Ptgs2	T	C	1: 149,980,028 (GRCm39)		probably benign	Het
Slc12a8	T	A	16: 33,371,455 (GRCm39)	V197E	probably damaging	Het
Syne3	A	G	12: 104,913,183 (GRCm39)	W593R	possibly damaging	Het
Tmem63a	A	T	1: 180,800,298 (GRCm39)	T696S	probably benign	Het
Tnks2	A	G	19: 36,826,758 (GRCm39)	D165G	possibly damaging	Het
Unc45b	T	C	11: 82,820,393 (GRCm39)		probably benign	Het
Vmn1r4	T	A	6: 56,933,947 (GRCm39)	N150K	probably damaging	Het
Wdfy4	C	A	14: 32,805,769 (GRCm39)		probably benign	Het
Wdr77	T	A	3: 105,867,342 (GRCm39)	D63E	probably damaging	Het
Zan	T	C	5: 137,463,164 (GRCm39)	T672A	unknown	Het
Zdhhc17	A	T	10: 110,817,851 (GRCm39)		probably null	Het

Other mutations in Trim43a

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02400:Trim43a	APN	9	88,464,165 (GRCm39)	missense	probably benign	0.00
IGL02864:Trim43a	APN	9	88,470,165 (GRCm39)	missense	probably benign	0.20
R0114:Trim43a	UTSW	9	88,466,213 (GRCm39)	missense	probably damaging	1.00
R0514:Trim43a	UTSW	9	88,466,389 (GRCm39)	nonsense	probably null
R0682:Trim43a	UTSW	9	88,464,199 (GRCm39)	missense	probably benign	0.08
R0709:Trim43a	UTSW	9	88,464,199 (GRCm39)	missense	probably benign	0.08
R0727:Trim43a	UTSW	9	88,464,199 (GRCm39)	missense	probably benign	0.08
R1237:Trim43a	UTSW	9	88,465,042 (GRCm39)	intron	probably benign
R1239:Trim43a	UTSW	9	88,465,042 (GRCm39)	intron	probably benign
R1445:Trim43a	UTSW	9	88,465,042 (GRCm39)	intron	probably benign
R1448:Trim43a	UTSW	9	88,464,146 (GRCm39)	missense	probably damaging	1.00
R1584:Trim43a	UTSW	9	88,470,211 (GRCm39)	missense	probably damaging	1.00
R1925:Trim43a	UTSW	9	88,464,371 (GRCm39)	missense	probably benign	0.08
R1992:Trim43a	UTSW	9	88,466,312 (GRCm39)	missense	probably damaging	1.00
R2074:Trim43a	UTSW	9	88,468,147 (GRCm39)	missense	possibly damaging	0.91
R3927:Trim43a	UTSW	9	88,465,042 (GRCm39)	intron	probably benign
R3930:Trim43a	UTSW	9	88,465,131 (GRCm39)	missense	probably benign	0.04
R4418:Trim43a	UTSW	9	88,464,206 (GRCm39)	missense	probably damaging	1.00
R5488:Trim43a	UTSW	9	88,464,229 (GRCm39)	missense	probably damaging	0.97
R5489:Trim43a	UTSW	9	88,464,229 (GRCm39)	missense	probably damaging	0.97
R6498:Trim43a	UTSW	9	88,464,395 (GRCm39)	missense	probably damaging	1.00
R6742:Trim43a	UTSW	9	88,470,399 (GRCm39)	missense	possibly damaging	0.92
R7535:Trim43a	UTSW	9	88,470,201 (GRCm39)	missense	probably damaging	0.99
R7539:Trim43a	UTSW	9	88,465,096 (GRCm39)	missense	probably benign	0.08
R7580:Trim43a	UTSW	9	88,465,042 (GRCm39)	intron	probably benign
R7943:Trim43a	UTSW	9	88,464,238 (GRCm39)	missense	probably benign	0.16
R8073:Trim43a	UTSW	9	88,464,490 (GRCm39)	missense	possibly damaging	0.71
R8983:Trim43a	UTSW	9	88,464,404 (GRCm39)	missense	probably benign	0.23
R9030:Trim43a	UTSW	9	88,465,042 (GRCm39)	intron	probably benign
R9646:Trim43a	UTSW	9	88,466,392 (GRCm39)	missense	probably benign	0.08

Predicted Primers

PCR Primer
(F):5'- CATGTTCGGCTACACCTCAGTCAG -3'
(R):5'- TGACAGCACAATGGAAAGTTCCAGG -3'

Sequencing Primer
(F):5'- ACACCTCAGTCAGACCTTTTG -3'
(R):5'- ATGAGGGAACTCTTGGCTACATC -3'

Posted On

2013-05-23