Mutagenetix > Incidental Mutation

Incidental Mutation 'R4950:Vstm5'

381923

Institutional Source

Beutler Lab

Gene Symbol

Vstm5

Ensembl Gene

ENSMUSG00000031937

Gene Name

V-set and transmembrane domain containing 5

Synonyms

2200002K05Rik

MMRRC Submission

042547-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.069) question?

Stock #

R4950 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

15150341-15170712 bp(+) (GRCm39)

Type of Mutation

splice site (3 bp from exon)

DNA Base Change (assembly)

A to G at 15169090 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000034413 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000034411] [ENSMUST00000034413] [ENSMUST00000213788]

AlphaFold

Q9D806

Predicted Effect

probably benign
Transcript: ENSMUST00000034411

SMART Domains

Protein: ENSMUSP00000034411
Gene: ENSMUSG00000031935

Domain	Start	End	E-Value	Type
low complexity region	51	82	N/A	INTRINSIC
Pfam:Med17	123	452	8.5e-13	PFAM

Predicted Effect

probably null
Transcript: ENSMUST00000034413

SMART Domains

Protein: ENSMUSP00000034413
Gene: ENSMUSG00000031937

Domain	Start	End	E-Value	Type
signal peptide	1	27	N/A	INTRINSIC
IG	39	138	2e-3	SMART
transmembrane domain	147	169	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000213788

Meta Mutation Damage Score

0.9755

Coding Region Coverage

1x: 99.1%
3x: 98.3%
10x: 96.5%
20x: 92.9%

Validation Efficiency

100% (58/58)

Allele List at MGI

Other mutations in this stock

Total: 52 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Bpifb9b	A	T	2: 154,153,579 (GRCm39)	D215V	probably damaging	Het
Cacna1i	A	G	15: 80,252,872 (GRCm39)	E625G	probably damaging	Het
Cage1	C	T	13: 38,207,302 (GRCm39)	S181N	possibly damaging	Het
Ccdc73	A	C	2: 104,822,711 (GRCm39)	I887L	probably benign	Het
Cfap65	T	A	1: 74,945,495 (GRCm39)	K1408*	probably null	Het
Cngb1	C	A	8: 95,975,135 (GRCm39)	G654W	probably damaging	Het
Cxcl15	A	T	5: 90,943,104 (GRCm39)	E35D	possibly damaging	Het
Ddi1	A	G	9: 6,266,073 (GRCm39)	S99P	probably benign	Het
Disp3	A	T	4: 148,342,583 (GRCm39)	D622E	possibly damaging	Het
Dnajc22	G	A	15: 98,999,615 (GRCm39)	V267I	probably benign	Het
Dph5	G	A	3: 115,722,292 (GRCm39)	G257S	probably benign	Het
Elmo2	A	T	2: 165,156,733 (GRCm39)		probably null	Het
Fam186a	T	C	15: 99,839,534 (GRCm39)	R2237G	unknown	Het
Fez1	G	A	9: 36,779,178 (GRCm39)	R285Q	probably damaging	Het
Fsip2	A	T	2: 82,777,276 (GRCm39)	H101L	probably damaging	Het
Fsip2	G	A	2: 82,807,758 (GRCm39)	C1359Y	probably benign	Het
Fxyd7	G	A	7: 30,746,815 (GRCm39)	T15I	probably benign	Het
Gpr155	A	T	2: 73,212,529 (GRCm39)	D31E	probably benign	Het
Iho1	A	C	9: 108,298,709 (GRCm39)	S36R	probably damaging	Het
Irx6	A	T	8: 93,405,428 (GRCm39)	Y432F	probably damaging	Het
Itih5	A	C	2: 10,239,892 (GRCm39)	I340L	probably damaging	Het
Lao1	T	C	4: 118,822,572 (GRCm39)	L164S	probably damaging	Het
Mcoln3	T	C	3: 145,845,274 (GRCm39)	I490T	probably damaging	Het
Mef2b	T	C	8: 70,619,846 (GRCm39)	Y311H	probably damaging	Het
Mras	A	T	9: 99,276,537 (GRCm39)	L111Q	probably damaging	Het
Mrc1	A	G	2: 14,276,091 (GRCm39)	D475G	probably damaging	Het
Nrcam	T	C	12: 44,645,273 (GRCm39)	I1155T	probably damaging	Het
Ntrk1	A	G	3: 87,696,918 (GRCm39)		probably null	Het
Or7e165	G	A	9: 19,695,027 (GRCm39)	M199I	probably benign	Het
Or8b38	T	C	9: 37,973,297 (GRCm39)	I227T	probably damaging	Het
Parp9	A	T	16: 35,768,377 (GRCm39)	I186F	probably damaging	Het
Pcdhac2	T	A	18: 37,278,283 (GRCm39)	V421E	probably benign	Het
Pck1	T	A	2: 172,996,620 (GRCm39)	I178K	probably benign	Het
Pde6b	A	G	5: 108,578,569 (GRCm39)	K836E	probably benign	Het
Ptprd	T	A	4: 76,058,752 (GRCm39)		probably null	Het
Pwp2	A	G	10: 78,018,840 (GRCm39)	Y56H	probably benign	Het
Rarb	G	A	14: 16,432,085 (GRCm38)		probably benign	Het
Rpain	C	G	11: 70,861,747 (GRCm39)	H50Q	probably benign	Het
Rps9	CTGTTTG	CTG	7: 3,707,758 (GRCm39)		probably null	Het
Rubcn	A	T	16: 32,663,563 (GRCm39)	S358T	probably damaging	Het
Ryr2	G	A	13: 11,756,897 (GRCm39)	R1586C	probably damaging	Het
Slfn9	T	C	11: 82,872,730 (GRCm39)	I669V	probably benign	Het
Slx1b	T	C	7: 126,290,939 (GRCm39)		probably benign	Het
Spsb3	T	A	17: 25,106,485 (GRCm39)		probably benign	Het
Tbx15	A	G	3: 99,233,700 (GRCm39)	I288V	possibly damaging	Het
Tlr2	C	A	3: 83,744,639 (GRCm39)	E481D	probably damaging	Het
Trim17	A	T	11: 58,861,254 (GRCm39)	D253V	probably damaging	Het
Trim69	A	G	2: 122,009,227 (GRCm39)	D429G	probably damaging	Het
Vwa3b	A	G	1: 37,124,413 (GRCm39)	Q337R	probably benign	Het
Zfp113	T	C	5: 138,143,734 (GRCm39)	N172S	probably benign	Het
Zfp607a	T	A	7: 27,578,176 (GRCm39)	H415Q	probably damaging	Het
Zfp87	G	A	13: 67,666,018 (GRCm39)	T148I	probably benign	Het

Other mutations in Vstm5

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01597:Vstm5	APN	9	15,168,675 (GRCm39)	missense	probably damaging	1.00
IGL01781:Vstm5	APN	9	15,168,968 (GRCm39)	missense	probably damaging	1.00
IGL02940:Vstm5	APN	9	15,168,962 (GRCm39)	missense	probably damaging	1.00
R1155:Vstm5	UTSW	9	15,168,849 (GRCm39)	missense	probably damaging	1.00
R1721:Vstm5	UTSW	9	15,168,663 (GRCm39)	missense	probably benign	0.13
R2368:Vstm5	UTSW	9	15,169,027 (GRCm39)	missense	probably benign	0.00
R3160:Vstm5	UTSW	9	15,168,594 (GRCm39)	missense	probably benign	0.02
R3161:Vstm5	UTSW	9	15,168,594 (GRCm39)	missense	probably benign	0.02
R3162:Vstm5	UTSW	9	15,168,594 (GRCm39)	missense	probably benign	0.02
R4612:Vstm5	UTSW	9	15,168,789 (GRCm39)	missense	probably benign	0.22
R4692:Vstm5	UTSW	9	15,168,718 (GRCm39)	missense	probably damaging	0.99
R5088:Vstm5	UTSW	9	15,168,601 (GRCm39)	missense	possibly damaging	0.87
R6351:Vstm5	UTSW	9	15,168,829 (GRCm39)	missense	probably damaging	1.00
R7063:Vstm5	UTSW	9	15,150,549 (GRCm39)	start gained	probably benign
R7720:Vstm5	UTSW	9	15,150,652 (GRCm39)	missense	probably benign	0.08
R9300:Vstm5	UTSW	9	15,168,585 (GRCm39)	missense	probably damaging	1.00
R9491:Vstm5	UTSW	9	15,168,586 (GRCm39)	missense	probably damaging	0.99

Predicted Primers

PCR Primer
(F):5'- ATTAAGAGAGACCTTGCCTCCCC -3'
(R):5'- AGTCAAAGGCAACCTCTTTTGG -3'

Sequencing Primer
(F):5'- CTCCTGTCCCACCGCAGAG -3'
(R):5'- TTCCGGGAATTATCAGCCAG -3'

Posted On

2016-04-27