Mutagenetix > Incidental Mutation

Incidental Mutation 'R4905:1700017N19Rik'

378114

Institutional Source

Beutler Lab

Gene Symbol

1700017N19Rik

Ensembl Gene

ENSMUSG00000056912

Gene Name

RIKEN cDNA 1700017N19 gene

Synonyms

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.073) question?

Stock #

R4905 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

100426346-100454257 bp(+) (GRCm39)

Type of Mutation

splice site (301 bp from exon)

DNA Base Change (assembly)

A to T at 100448680 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000140717 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000041162] [ENSMUST00000186825] [ENSMUST00000187119] [ENSMUST00000188736] [ENSMUST00000190386] [ENSMUST00000190708] [ENSMUST00000191033] [ENSMUST00000218464] [ENSMUST00000191336]

AlphaFold

A0A087WPJ1

Predicted Effect

probably damaging
Transcript: ENSMUST00000041162
AA Change: N332Y

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

Predicted Effect

probably benign
Transcript: ENSMUST00000186825

Predicted Effect

probably damaging
Transcript: ENSMUST00000187119
AA Change: N291Y

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

Predicted Effect

probably damaging
Transcript: ENSMUST00000188736
AA Change: N331Y

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

Predicted Effect

probably damaging
Transcript: ENSMUST00000190386
AA Change: N292Y

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

Predicted Effect

probably damaging
Transcript: ENSMUST00000190708
AA Change: N386Y

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

Predicted Effect

probably damaging
Transcript: ENSMUST00000191033
AA Change: N131Y

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

Predicted Effect

probably damaging
Transcript: ENSMUST00000218464
AA Change: N332Y

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

Predicted Effect

probably null
Transcript: ENSMUST00000191336

Coding Region Coverage

1x: 98.9%
3x: 98.0%
10x: 95.0%
20x: 87.5%

Validation Efficiency

Allele List at MGI

Other mutations in this stock

Total: 61 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2700049A03Rik	G	T	12: 71,211,320 (GRCm39)	E685*	probably null	Het
2700049A03Rik	A	T	12: 71,211,321 (GRCm39)	E685V	possibly damaging	Het
Abcc5	A	G	16: 20,218,678 (GRCm39)	S235P	probably damaging	Het
Abcc6	T	C	7: 45,644,649 (GRCm39)	N842S	probably benign	Het
Acbd6	G	A	1: 155,500,669 (GRCm39)	V210I	probably benign	Het
Ahctf1	A	T	1: 179,576,192 (GRCm39)	V2130D	probably damaging	Het
Akap5	A	G	12: 76,375,207 (GRCm39)	E213G	probably damaging	Het
Alyref	T	G	11: 120,486,879 (GRCm39)		probably null	Het
Anapc5	G	T	5: 122,955,973 (GRCm39)	N152K	probably benign	Het
Atp8b2	A	T	3: 89,856,315 (GRCm39)	D416E	probably benign	Het
AW551984	A	T	9: 39,508,454 (GRCm39)	V354E	probably damaging	Het
Bag6	A	G	17: 35,364,162 (GRCm39)	E844G	probably damaging	Het
Bmp1	C	T	14: 70,728,802 (GRCm39)	R590H	probably benign	Het
Ccnh	T	C	13: 85,354,254 (GRCm39)	S233P	possibly damaging	Het
Cdca7	TGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA	TGAAGAAGAAGAAGAAGAAGAAGAAGAAGA	2: 72,312,205 (GRCm39)		probably benign	Het
Col6a6	A	G	9: 105,644,623 (GRCm39)	S1222P	probably damaging	Het
Dhfr	G	A	13: 92,502,282 (GRCm39)	G118S	probably damaging	Het
Dnah9	G	A	11: 65,764,950 (GRCm39)	R1414*	probably null	Het
Dnai1	A	G	4: 41,614,269 (GRCm39)	D315G	probably benign	Het
Eogt	T	C	6: 97,119,792 (GRCm39)	R139G	probably benign	Het
Fcgbpl1	A	T	7: 27,856,408 (GRCm39)	K2065M	possibly damaging	Het
Fh1	C	T	1: 175,446,639 (GRCm39)	G79E	probably damaging	Het
Gabrg3	A	G	7: 56,374,304 (GRCm39)	Y421H	probably damaging	Het
Glipr1	C	A	10: 111,821,545 (GRCm39)	R219L	probably damaging	Het
Gm1123	T	C	9: 98,891,369 (GRCm39)	D360G	probably benign	Het
Ift81	C	T	5: 122,729,142 (GRCm39)		probably null	Het
Itsn2	A	G	12: 4,684,583 (GRCm39)		probably benign	Het
Kri1	A	T	9: 21,198,998 (GRCm39)	H55Q	probably benign	Het
Mcidas	C	A	13: 113,130,951 (GRCm39)	A92E	possibly damaging	Het
Mcidas	C	T	13: 113,134,038 (GRCm39)	T174M	possibly damaging	Het
Mmp25	C	A	17: 23,863,022 (GRCm39)	G130*	probably null	Het
Myh11	G	A	16: 14,068,387 (GRCm39)	T211M	probably benign	Het
Myo10	A	G	15: 25,800,298 (GRCm39)	D1458G	probably damaging	Het
Ncf4	A	G	15: 78,139,104 (GRCm39)	T154A	probably damaging	Het
Nfatc4	T	C	14: 56,068,039 (GRCm39)	I620T	probably benign	Het
Nos3	A	T	5: 24,572,329 (GRCm39)	Y134F	probably benign	Het
Nup50l	T	A	6: 96,142,911 (GRCm39)	R44S	possibly damaging	Het
Or13c3	T	C	4: 52,855,613 (GRCm39)	N300S	probably damaging	Het
Or51a6	A	T	7: 102,604,721 (GRCm39)	I36N	probably damaging	Het
Or5b106	C	A	19: 13,123,541 (GRCm39)	A161S	probably benign	Het
Or6c209	T	A	10: 129,483,792 (GRCm39)	V265E	possibly damaging	Het
Pax9	G	T	12: 56,743,411 (GRCm39)	R19S	probably damaging	Het
Pcdha9	T	C	18: 37,131,945 (GRCm39)	I338T	probably damaging	Het
Plxnb2	G	T	15: 89,041,614 (GRCm39)	T1730K	probably damaging	Het
Rac1	A	G	5: 143,502,907 (GRCm39)		probably null	Het
Samsn1	G	T	16: 75,673,353 (GRCm39)	F174L	possibly damaging	Het
Scaf1	G	A	7: 44,662,129 (GRCm39)	T86M	probably damaging	Het
Smc1b	A	G	15: 84,950,428 (GRCm39)	Y1199H	probably damaging	Het
Svep1	A	G	4: 58,069,308 (GRCm39)	I2826T	probably benign	Het
Tex36	A	G	7: 133,189,182 (GRCm39)	V130A	probably damaging	Het
Tigd5	A	G	15: 75,783,252 (GRCm39)	H538R	probably damaging	Het
Tlr3	C	A	8: 45,852,260 (GRCm39)		probably null	Het
Tubb2b	A	T	13: 34,312,187 (GRCm39)	I202N	probably damaging	Het
Unc13c	A	G	9: 73,587,674 (GRCm39)	V1453A	probably benign	Het
Unc5c	A	T	3: 141,507,071 (GRCm39)	T608S	probably benign	Het
Vrk1	C	A	12: 106,018,087 (GRCm39)	H119N	probably damaging	Het
Wdr53	T	A	16: 32,075,476 (GRCm39)	M227K	probably benign	Het
Xpo4	T	C	14: 57,875,746 (GRCm39)	D129G	possibly damaging	Het
Zcchc4	T	C	5: 52,953,992 (GRCm39)	I224T	probably damaging	Het
Zdhhc1	T	A	8: 106,210,326 (GRCm39)	E30D	probably damaging	Het
Zscan29	C	G	2: 120,991,864 (GRCm39)	R540T	possibly damaging	Het

Other mutations in 1700017N19Rik

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01565:1700017N19Rik	APN	10	100,439,222 (GRCm39)	missense	probably damaging	1.00
IGL02159:1700017N19Rik	APN	10	100,446,527 (GRCm39)	missense	probably damaging	1.00
IGL02556:1700017N19Rik	APN	10	100,446,579 (GRCm39)	critical splice donor site	probably null
IGL02629:1700017N19Rik	APN	10	100,445,006 (GRCm39)	splice site	probably benign
IGL02692:1700017N19Rik	APN	10	100,439,410 (GRCm39)	missense	probably benign	0.05
IGL02962:1700017N19Rik	APN	10	100,446,455 (GRCm39)	splice site	probably null
R0145:1700017N19Rik	UTSW	10	100,437,783 (GRCm39)	missense	probably damaging	0.96
R0402:1700017N19Rik	UTSW	10	100,445,115 (GRCm39)	missense	probably damaging	0.99
R1514:1700017N19Rik	UTSW	10	100,448,729 (GRCm39)	missense	probably damaging	1.00
R1519:1700017N19Rik	UTSW	10	100,439,390 (GRCm39)	missense	probably damaging	0.98
R1680:1700017N19Rik	UTSW	10	100,439,390 (GRCm39)	missense	probably damaging	0.98
R1686:1700017N19Rik	UTSW	10	100,448,722 (GRCm39)	missense	probably damaging	0.97
R3951:1700017N19Rik	UTSW	10	100,451,158 (GRCm39)	splice site	probably benign
R3952:1700017N19Rik	UTSW	10	100,451,158 (GRCm39)	splice site	probably benign
R4423:1700017N19Rik	UTSW	10	100,441,495 (GRCm39)	missense	probably damaging	0.99
R5507:1700017N19Rik	UTSW	10	100,445,095 (GRCm39)	missense	probably benign	0.02
R5898:1700017N19Rik	UTSW	10	100,451,070 (GRCm39)	missense	probably benign	0.20
R5898:1700017N19Rik	UTSW	10	100,448,762 (GRCm39)	missense	possibly damaging	0.56
R5977:1700017N19Rik	UTSW	10	100,451,106 (GRCm39)	missense	probably damaging	0.99
R7034:1700017N19Rik	UTSW	10	100,445,118 (GRCm39)	critical splice donor site	probably null
R7036:1700017N19Rik	UTSW	10	100,445,118 (GRCm39)	critical splice donor site	probably null
R7394:1700017N19Rik	UTSW	10	100,445,038 (GRCm39)	missense	probably benign	0.01
R7412:1700017N19Rik	UTSW	10	100,448,691 (GRCm39)	nonsense	probably null
R7870:1700017N19Rik	UTSW	10	100,441,505 (GRCm39)	missense	probably benign
R7914:1700017N19Rik	UTSW	10	100,428,538 (GRCm39)	missense	probably benign
R8466:1700017N19Rik	UTSW	10	100,437,873 (GRCm39)	missense	probably benign	0.00
R8558:1700017N19Rik	UTSW	10	100,430,497 (GRCm39)	missense	probably benign	0.23
R9004:1700017N19Rik	UTSW	10	100,454,197 (GRCm39)	unclassified	probably benign
R9105:1700017N19Rik	UTSW	10	100,439,407 (GRCm39)	nonsense	probably null
R9641:1700017N19Rik	UTSW	10	100,430,498 (GRCm39)	missense	possibly damaging	0.91
Z1088:1700017N19Rik	UTSW	10	100,441,501 (GRCm39)	missense	probably damaging	1.00
Z1176:1700017N19Rik	UTSW	10	100,448,291 (GRCm39)	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- AGCTTGGATCATCTTCTGTCTTGATAC -3'
(R):5'- GCTGGTCCAGGAAAAGCAAC -3'

Sequencing Primer
(F):5'- GATACCCCATGCTTCACGTTCAG -3'
(R):5'- TCCTGAGTCAAAGTGCAGTC -3'

Posted On

2016-04-15