Mutagenetix > Incidental Mutation

Incidental Mutation 'R4649:Tns1'

350544

Institutional Source

Beutler Lab

Gene Symbol

Tns1

Ensembl Gene

ENSMUSG00000055322

Gene Name

tensin 1

Synonyms

E030018G17Rik, 1110018I21Rik, E030037J05Rik, 1200014E20Rik, Tns

MMRRC Submission

041910-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.565) question?

Stock #

R4649 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

73949390-74163608 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to G at 73992930 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Serine to Proline at position 583 (S583P)

Ref Sequence

ENSEMBL: ENSMUSP00000148638 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000169786] [ENSMUST00000187584] [ENSMUST00000191104] [ENSMUST00000191367] [ENSMUST00000212888]

AlphaFold

E9Q0S6

Predicted Effect

probably damaging
Transcript: ENSMUST00000169786
AA Change: S583P

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000127715
Gene: ENSMUSG00000055322
AA Change: S583P

Domain	Start	End	E-Value	Type
low complexity region	15	33	N/A	INTRINSIC
C1	62	108	1.77e-2	SMART
low complexity region	154	167	N/A	INTRINSIC
SCOP:d1d5ra2	176	348	3e-32	SMART
PTEN_C2	350	477	1.12e-51	SMART
low complexity region	822	833	N/A	INTRINSIC
low complexity region	905	922	N/A	INTRINSIC
low complexity region	1227	1239	N/A	INTRINSIC
low complexity region	1284	1300	N/A	INTRINSIC
low complexity region	1459	1470	N/A	INTRINSIC
low complexity region	1518	1530	N/A	INTRINSIC
SH2	1614	1716	6.85e-17	SMART
PTB	1747	1888	1.69e-29	SMART

Predicted Effect

unknown
Transcript: ENSMUST00000185331
AA Change: S413P

Predicted Effect

unknown
Transcript: ENSMUST00000185702
AA Change: S413P

Predicted Effect

probably damaging
Transcript: ENSMUST00000187584
AA Change: S539P

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000140254
Gene: ENSMUSG00000055322
AA Change: S539P

Domain	Start	End	E-Value	Type
C1	21	67	8.6e-5	SMART
low complexity region	113	124	N/A	INTRINSIC
PTPc_DSPc	197	319	9.9e-6	SMART
PTEN_C2	306	433	5.6e-56	SMART
low complexity region	778	789	N/A	INTRINSIC
low complexity region	861	878	N/A	INTRINSIC
low complexity region	1162	1174	N/A	INTRINSIC
low complexity region	1219	1235	N/A	INTRINSIC
low complexity region	1394	1405	N/A	INTRINSIC
low complexity region	1453	1465	N/A	INTRINSIC
SH2	1549	1651	4.3e-19	SMART
PTB	1682	1823	9e-32	SMART

Predicted Effect

probably damaging
Transcript: ENSMUST00000191104
AA Change: S583P

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000140317
Gene: ENSMUSG00000055322
AA Change: S583P

Domain	Start	End	E-Value	Type
low complexity region	15	33	N/A	INTRINSIC
C1	62	108	8.6e-5	SMART
low complexity region	154	167	N/A	INTRINSIC
PTPc_DSPc	241	363	9.9e-6	SMART
PTEN_C2	350	477	5.6e-56	SMART
low complexity region	822	833	N/A	INTRINSIC
low complexity region	905	922	N/A	INTRINSIC
low complexity region	1206	1218	N/A	INTRINSIC
low complexity region	1263	1279	N/A	INTRINSIC
low complexity region	1438	1449	N/A	INTRINSIC
low complexity region	1497	1509	N/A	INTRINSIC
SH2	1593	1695	4.3e-19	SMART
PTB	1726	1867	9e-32	SMART

Predicted Effect

probably benign
Transcript: ENSMUST00000191367

Predicted Effect

probably damaging
Transcript: ENSMUST00000212888
AA Change: S583P

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

Coding Region Coverage

1x: 99.3%
3x: 98.6%
10x: 97.3%
20x: 95.4%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene localizes to focal adhesions, regions of the plasma membrane where the cell attaches to the extracellular matrix. This protein crosslinks actin filaments and contains a Src homology 2 (SH2) domain, which is often found in molecules involved in signal transduction. This protein is a substrate of calpain II. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Apr 2015]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit reduced female fertility, and develop kidney cysts and progressive kidney degeneration that may lead to death from renal failure. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 106 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
2700049A03Rik	G	T	12: 71,211,320 (GRCm39)	E685*	probably null	Het
2700049A03Rik	A	T	12: 71,211,321 (GRCm39)	E685V	possibly damaging	Het
4933409G03Rik	G	A	2: 68,436,559 (GRCm39)	E168K	unknown	Het
Abca4	G	T	3: 121,963,542 (GRCm39)	V841F	probably damaging	Het
Adcy10	G	A	1: 165,331,618 (GRCm39)	E84K	probably damaging	Het
Adgrg6	C	A	10: 14,344,571 (GRCm39)	M127I	probably damaging	Het
Agpat5	A	G	8: 18,929,668 (GRCm39)	I266V	possibly damaging	Het
Agtpbp1	A	T	13: 59,676,213 (GRCm39)	Y186N	possibly damaging	Het
Alx1	A	T	10: 102,845,193 (GRCm39)	N279K	probably damaging	Het
Arsi	G	A	18: 61,049,723 (GRCm39)	G202E	probably benign	Het
Arsi	A	G	18: 61,050,170 (GRCm39)	Y351C	probably damaging	Het
B4galnt3	T	A	6: 120,201,581 (GRCm39)	R155W	probably damaging	Het
BC028528	T	C	3: 95,795,577 (GRCm39)	E75G	probably damaging	Het
Bmp2k	C	T	5: 97,200,970 (GRCm39)	P297S	possibly damaging	Het
Btnl4	A	G	17: 34,691,602 (GRCm39)	S296P	probably benign	Het
Bzw2	A	T	12: 36,173,980 (GRCm39)	V98E	probably null	Het
Cacna1d	C	T	14: 29,817,365 (GRCm39)	M1232I	probably benign	Het
Cast	A	G	13: 74,894,133 (GRCm39)	S171P	probably benign	Het
Catsperb	G	A	12: 101,507,771 (GRCm39)	A513T	probably benign	Het
Cd19	A	G	7: 126,013,664 (GRCm39)	S42P	probably benign	Het
Chml	A	G	1: 175,514,962 (GRCm39)	S138P	probably benign	Het
Clic6	T	G	16: 92,327,827 (GRCm39)		probably null	Het
Col12a1	A	T	9: 79,547,076 (GRCm39)	V2252E	probably damaging	Het
Cplx2	G	A	13: 54,527,361 (GRCm39)	E82K	probably benign	Het
Csmd2	G	A	4: 128,439,866 (GRCm39)	V3107M	probably benign	Het
Cspg4	T	A	9: 56,794,149 (GRCm39)	V628D	possibly damaging	Het
Dcaf13	G	A	15: 39,001,637 (GRCm39)	R315Q	possibly damaging	Het
Deaf1	A	G	7: 140,877,486 (GRCm39)	V547A	possibly damaging	Het
Dmxl1	C	T	18: 50,011,698 (GRCm39)	T1285I	probably damaging	Het
Dnah3	C	A	7: 119,646,921 (GRCm39)	W1036L	probably damaging	Het
Dnai3	A	G	3: 145,753,922 (GRCm39)	S713P	probably damaging	Het
Dpy19l1	A	C	9: 24,393,350 (GRCm39)	S140A	possibly damaging	Het
Dsg2	T	A	18: 20,735,302 (GRCm39)	D1093E	possibly damaging	Het
Edaradd	T	A	13: 12,523,304 (GRCm39)	H12L	probably damaging	Het
Enam	T	C	5: 88,640,827 (GRCm39)	M163T	probably benign	Het
Fbxo22	T	A	9: 55,128,333 (GRCm39)	V218E	probably damaging	Het
Fbxo34	A	T	14: 47,767,085 (GRCm39)	K148N	probably damaging	Het
Foxi3	A	G	6: 70,933,960 (GRCm39)	D149G	probably damaging	Het
Gbp8	C	T	5: 105,189,807 (GRCm39)	G75D	probably damaging	Het
Gm10784	C	T	13: 50,099,251 (GRCm39)		noncoding transcript	Het
Gm7247	G	A	14: 51,807,051 (GRCm39)		probably null	Het
Grik3	T	A	4: 125,544,278 (GRCm39)	V333E	probably damaging	Het
Gsap	A	T	5: 21,431,309 (GRCm39)	D211V	probably damaging	Het
H2-T15	T	C	17: 36,368,768 (GRCm39)	Y104C	possibly damaging	Het
Ino80	T	C	2: 119,261,489 (GRCm39)	N725S	probably damaging	Het
Itgad	A	G	7: 127,788,703 (GRCm39)	I443V	probably benign	Het
Itsn1	T	A	16: 91,638,476 (GRCm39)	I52N	probably damaging	Het
Kmt2b	TCTCCTCCTCCTCCTCCTCCTCCTCC	TCTCCTCCTCCTCCTCCTCCTCC	7: 30,285,783 (GRCm39)		probably benign	Het
Lamc1	T	G	1: 153,104,523 (GRCm39)	S59R	probably damaging	Het
Lrrk1	T	C	7: 65,922,801 (GRCm39)	I1366V	probably benign	Het
Lyn	C	A	4: 3,738,850 (GRCm39)	Q41K	probably benign	Het
Mapk13	C	T	17: 28,997,461 (GRCm39)	R360*	probably null	Het
Mapk8ip3	T	A	17: 25,123,726 (GRCm39)	I599F	probably damaging	Het
Me1	T	C	9: 86,561,905 (GRCm39)	K60R	probably benign	Het
Mga	T	A	2: 119,771,974 (GRCm39)	D1532E	possibly damaging	Het
Miga1	G	A	3: 151,984,642 (GRCm39)	S427L	probably benign	Het
Mknk2	A	T	10: 80,505,173 (GRCm39)	V186E	probably damaging	Het
Myo1a	C	A	10: 127,546,086 (GRCm39)	N236K	probably benign	Het
Myt1	A	G	2: 181,439,207 (GRCm39)	D243G	probably benign	Het
Ncf4	T	C	15: 78,140,189 (GRCm39)	V196A	possibly damaging	Het
Nlrp5	G	T	7: 23,117,603 (GRCm39)	L442F	probably damaging	Het
Olfm4	G	A	14: 80,258,747 (GRCm39)	D332N	probably benign	Het
Or4a81	C	A	2: 89,619,637 (GRCm39)	V20F	probably benign	Het
Or4b1d	T	A	2: 89,969,432 (GRCm39)	D17V	probably damaging	Het
Osbpl11	T	A	16: 33,016,452 (GRCm39)	M69K	probably benign	Het
Oxnad1	T	A	14: 31,824,366 (GRCm39)	*312K	probably null	Het
Plekhg1	A	G	10: 3,906,985 (GRCm39)	Q634R	probably benign	Het
Plekhh2	T	C	17: 84,882,691 (GRCm39)	Y733H	probably damaging	Het
Ppp1r21	A	G	17: 88,856,941 (GRCm39)	H132R	probably benign	Het
Prkcq	T	C	2: 11,284,333 (GRCm39)	V501A	possibly damaging	Het
Prpf38b	G	A	3: 108,811,408 (GRCm39)		probably benign	Het
Prpf4b	A	T	13: 35,083,954 (GRCm39)	M908L	probably benign	Het
Prps2	T	C	X: 166,135,288 (GRCm39)	D183G	probably damaging	Het
Pudp	T	C	18: 50,701,259 (GRCm39)	D158G	probably damaging	Het
R3hdm1	T	C	1: 128,112,181 (GRCm39)	S422P	probably damaging	Het
Ranbp3	T	A	17: 57,003,640 (GRCm39)		probably null	Het
Ranbp6	A	G	19: 29,787,721 (GRCm39)	V877A	probably benign	Het
Rgsl1	A	T	1: 153,693,328 (GRCm39)	S618T	probably benign	Het
Rhox2a	G	C	X: 36,508,962 (GRCm39)	R43P	probably benign	Het
Rhox2a	A	T	X: 36,509,015 (GRCm39)	I61L	probably benign	Het
Rnf207	A	C	4: 152,396,612 (GRCm39)	D466E	probably benign	Het
Rnf7	A	G	9: 96,353,883 (GRCm39)	I80T	probably benign	Het
Ros1	T	A	10: 52,005,764 (GRCm39)	I878F	possibly damaging	Het
Rsbn1	T	A	3: 103,861,096 (GRCm39)		probably null	Het
Sbk1	T	C	7: 125,890,301 (GRCm39)	S105P	probably damaging	Het
Sdk1	T	C	5: 141,992,380 (GRCm39)	Y790H	probably damaging	Het
Sec62	T	A	3: 30,864,683 (GRCm39)	N182K	unknown	Het
Slc15a1	T	C	14: 121,715,504 (GRCm39)	Y345C	probably damaging	Het
Slc27a1	G	A	8: 72,023,408 (GRCm39)	A15T	probably benign	Het
Slc35d1	A	G	4: 103,070,426 (GRCm39)	F110L	probably damaging	Het
Slc39a5	T	A	10: 128,233,136 (GRCm39)	S333C	probably benign	Het
Tarbp1	A	G	8: 127,173,934 (GRCm39)	S927P	probably damaging	Het
Trim38	A	T	13: 23,966,952 (GRCm39)	D133V	probably damaging	Het
Trim40	T	C	17: 37,193,531 (GRCm39)		probably null	Het
Trim42	C	A	9: 97,244,998 (GRCm39)	V601L	probably benign	Het
Trpc7	G	A	13: 57,035,367 (GRCm39)	R189C	probably damaging	Het
Ttc29	A	T	8: 79,060,208 (GRCm39)	Y376F	probably benign	Het
Vmn2r63	A	G	7: 42,553,114 (GRCm39)	I714T	possibly damaging	Het
Vmn2r68	C	A	7: 84,870,743 (GRCm39)	A847S	probably benign	Het
Zbp1	G	A	2: 173,049,608 (GRCm39)	P385S	possibly damaging	Het
Zfat	A	G	15: 68,056,325 (GRCm39)	Y237H	probably damaging	Het
Zfp236	A	T	18: 82,615,784 (GRCm39)	W1840R	probably damaging	Het
Zfp426	G	T	9: 20,381,923 (GRCm39)	Q341K	possibly damaging	Het
Zfp462	T	A	4: 55,009,349 (GRCm39)	N438K	probably benign	Het
Zfp952	T	A	17: 33,221,899 (GRCm39)	V88E	probably damaging	Het
Znfx1	G	T	2: 166,898,276 (GRCm39)	A216D	probably benign	Het

Other mutations in Tns1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00954:Tns1	APN	1	73,964,128 (GRCm39)	missense	probably damaging	0.99
IGL01288:Tns1	APN	1	73,992,969 (GRCm39)	missense	probably damaging	1.00
IGL01536:Tns1	APN	1	73,958,807 (GRCm39)	splice site	probably benign
IGL01568:Tns1	APN	1	73,992,668 (GRCm39)	missense	probably damaging	1.00
IGL01683:Tns1	APN	1	73,992,428 (GRCm39)	missense	probably damaging	0.98
IGL02267:Tns1	APN	1	74,031,290 (GRCm39)	missense	possibly damaging	0.95
IGL02597:Tns1	APN	1	74,025,032 (GRCm39)	critical splice donor site	probably null
IGL02819:Tns1	APN	1	73,976,407 (GRCm39)	missense	probably damaging	0.99
IGL03370:Tns1	APN	1	74,025,053 (GRCm39)	missense	probably damaging	1.00
R0087:Tns1	UTSW	1	73,956,076 (GRCm39)	missense	possibly damaging	0.95
R0207:Tns1	UTSW	1	73,976,477 (GRCm39)	critical splice acceptor site	probably null
R0411:Tns1	UTSW	1	73,964,920 (GRCm39)	missense	probably damaging	0.96
R0543:Tns1	UTSW	1	73,991,856 (GRCm39)	missense	probably benign	0.01
R0552:Tns1	UTSW	1	73,959,722 (GRCm39)	missense	probably damaging	1.00
R0720:Tns1	UTSW	1	73,964,740 (GRCm39)	missense	probably benign	0.03
R0828:Tns1	UTSW	1	73,958,825 (GRCm39)	missense	probably damaging	1.00
R1034:Tns1	UTSW	1	73,981,128 (GRCm39)	missense	probably damaging	1.00
R1061:Tns1	UTSW	1	73,956,831 (GRCm39)	missense	probably damaging	1.00
R1819:Tns1	UTSW	1	73,955,635 (GRCm39)	splice site	probably benign
R1826:Tns1	UTSW	1	73,992,793 (GRCm39)	start codon destroyed	probably null	0.91
R2208:Tns1	UTSW	1	74,118,399 (GRCm39)	missense	probably damaging	1.00
R3723:Tns1	UTSW	1	73,964,099 (GRCm39)	missense	probably damaging	0.99
R4079:Tns1	UTSW	1	74,034,467 (GRCm39)	missense	probably damaging	1.00
R4111:Tns1	UTSW	1	73,981,091 (GRCm39)	missense	probably damaging	1.00
R4155:Tns1	UTSW	1	73,953,790 (GRCm39)	missense	probably damaging	1.00
R4156:Tns1	UTSW	1	73,953,790 (GRCm39)	missense	probably damaging	1.00
R4157:Tns1	UTSW	1	73,953,790 (GRCm39)	missense	probably damaging	1.00
R4274:Tns1	UTSW	1	73,967,257 (GRCm39)	missense	probably damaging	1.00
R4426:Tns1	UTSW	1	74,024,908 (GRCm39)	missense	probably damaging	0.97
R4742:Tns1	UTSW	1	74,163,449 (GRCm39)	critical splice donor site	probably null
R4869:Tns1	UTSW	1	73,991,774 (GRCm39)	missense	probably benign
R4961:Tns1	UTSW	1	73,975,074 (GRCm39)	missense	probably benign	0.35
R5025:Tns1	UTSW	1	73,964,641 (GRCm39)	missense	probably damaging	1.00
R5035:Tns1	UTSW	1	73,992,979 (GRCm39)	start gained	probably benign
R5062:Tns1	UTSW	1	73,992,023 (GRCm39)	missense	probably damaging	1.00
R5080:Tns1	UTSW	1	73,992,099 (GRCm39)	missense	probably damaging	1.00
R5213:Tns1	UTSW	1	73,992,771 (GRCm39)	missense	probably damaging	1.00
R5256:Tns1	UTSW	1	74,034,585 (GRCm39)	intron	probably benign
R5368:Tns1	UTSW	1	73,980,176 (GRCm39)	missense	probably benign	0.07
R5391:Tns1	UTSW	1	74,029,568 (GRCm39)	splice site	probably null
R5587:Tns1	UTSW	1	73,959,755 (GRCm39)	missense	possibly damaging	0.94
R5735:Tns1	UTSW	1	73,967,138 (GRCm39)	missense	probably benign	0.00
R5855:Tns1	UTSW	1	73,957,192 (GRCm39)	missense	possibly damaging	0.83
R5999:Tns1	UTSW	1	73,967,256 (GRCm39)	nonsense	probably null
R6122:Tns1	UTSW	1	73,991,578 (GRCm39)	critical splice donor site	probably null
R6148:Tns1	UTSW	1	73,992,612 (GRCm39)	missense	probably damaging	1.00
R6457:Tns1	UTSW	1	73,957,209 (GRCm39)	missense	probably damaging	0.99
R6525:Tns1	UTSW	1	73,992,629 (GRCm39)	missense	probably damaging	1.00
R6712:Tns1	UTSW	1	74,118,460 (GRCm39)	nonsense	probably null
R6773:Tns1	UTSW	1	73,958,866 (GRCm39)	missense	probably damaging	1.00
R6825:Tns1	UTSW	1	74,041,482 (GRCm39)	nonsense	probably null
R7085:Tns1	UTSW	1	73,964,621 (GRCm39)	missense	probably benign	0.00
R7128:Tns1	UTSW	1	74,034,463 (GRCm39)	missense
R7209:Tns1	UTSW	1	73,993,074 (GRCm39)	missense	possibly damaging	0.68
R7348:Tns1	UTSW	1	73,956,076 (GRCm39)	missense	possibly damaging	0.95
R7570:Tns1	UTSW	1	73,992,638 (GRCm39)	missense	probably damaging	1.00
R7670:Tns1	UTSW	1	73,991,636 (GRCm39)	missense	possibly damaging	0.93
R7769:Tns1	UTSW	1	73,992,530 (GRCm39)	missense	probably damaging	0.99
R7833:Tns1	UTSW	1	74,130,490 (GRCm39)	intron	probably benign
R8052:Tns1	UTSW	1	73,992,596 (GRCm39)	missense	probably damaging	1.00
R8225:Tns1	UTSW	1	74,025,046 (GRCm39)	missense	probably damaging	1.00
R8244:Tns1	UTSW	1	73,976,410 (GRCm39)	missense	probably damaging	1.00
R8321:Tns1	UTSW	1	74,024,939 (GRCm39)	critical splice acceptor site	probably null
R8344:Tns1	UTSW	1	74,024,201 (GRCm39)	missense	probably damaging	1.00
R8378:Tns1	UTSW	1	73,976,405 (GRCm39)	missense	probably damaging	1.00
R8434:Tns1	UTSW	1	73,964,765 (GRCm39)	missense	probably benign	0.00
R8773:Tns1	UTSW	1	73,976,407 (GRCm39)	missense	probably damaging	0.99
R9211:Tns1	UTSW	1	73,956,948 (GRCm39)	missense	possibly damaging	0.63
R9251:Tns1	UTSW	1	74,030,855 (GRCm39)	missense	probably damaging	1.00
R9315:Tns1	UTSW	1	73,980,141 (GRCm39)	missense
R9411:Tns1	UTSW	1	73,992,662 (GRCm39)	missense	probably damaging	1.00
R9592:Tns1	UTSW	1	74,029,553 (GRCm39)	missense	probably damaging	1.00
R9658:Tns1	UTSW	1	73,981,183 (GRCm39)	missense	probably benign	0.08
R9658:Tns1	UTSW	1	73,981,182 (GRCm39)	missense	probably benign	0.14
Z1177:Tns1	UTSW	1	74,041,466 (GRCm39)	missense	probably benign	0.12

Predicted Primers

PCR Primer
(F):5'- ACCATTGACGTGAACCTGGG -3'
(R):5'- TTGATGAGTGCACCTGGCTG -3'

Sequencing Primer
(F):5'- ACCTGGGCTGGGACAATGTG -3'
(R):5'- TTGCTGTCCCTGCAGAAG -3'

Posted On

2015-10-08