Incidental Mutation 'R4467:Brat1'
| ID |
329234 |
| Institutional Source |
Beutler Lab
|
| Gene Symbol |
Brat1
|
| Ensembl Gene |
ENSMUSG00000000148 |
| Gene Name |
BRCA1-associated ATM activator 1 |
| Synonyms |
Baat1 |
| MMRRC Submission |
041724-MU
|
| Accession Numbers |
|
| Essential gene? |
Possibly non essential
(E-score: 0.365)
|
| Stock # |
R4467 (G1)
|
| Quality Score |
225 |
|
Status
|
Validated
|
| Chromosome |
5 |
| Chromosomal Location |
140690766-140705134 bp(+) (GRCm39) |
| Type of Mutation |
utr 5 prime |
| DNA Base Change (assembly) |
T to C
at 140690826 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000114216
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000041588]
[ENSMUST00000041783]
[ENSMUST00000077890]
[ENSMUST00000100505]
[ENSMUST00000110806]
[ENSMUST00000142081]
[ENSMUST00000135028]
[ENSMUST00000153440]
|
| AlphaFold |
Q8C3R1 |
| Predicted Effect |
probably benign
Transcript: ENSMUST00000041588
|
| SMART Domains |
Protein: ENSMUSP00000036016
Gene: ENSMUSG00000000148
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
90 |
105 |
N/A |
INTRINSIC |
|
low complexity region
|
402 |
413 |
N/A |
INTRINSIC |
|
low complexity region
|
443 |
454 |
N/A |
INTRINSIC |
|
low complexity region
|
486 |
498 |
N/A |
INTRINSIC |
|
Pfam:HEAT
|
501 |
531 |
3e-6 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000041783
|
| SMART Domains |
Protein: ENSMUSP00000045913
Gene: ENSMUSG00000036555
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
33 |
53 |
N/A |
INTRINSIC |
|
low complexity region
|
128 |
139 |
N/A |
INTRINSIC |
|
coiled coil region
|
157 |
190 |
N/A |
INTRINSIC |
|
coiled coil region
|
212 |
266 |
N/A |
INTRINSIC |
|
coiled coil region
|
287 |
323 |
N/A |
INTRINSIC |
|
low complexity region
|
345 |
362 |
N/A |
INTRINSIC |
|
coiled coil region
|
398 |
491 |
N/A |
INTRINSIC |
|
IQ
|
552 |
574 |
1.36e-3 |
SMART |
|
low complexity region
|
579 |
598 |
N/A |
INTRINSIC |
|
IQ
|
614 |
636 |
1.63e-1 |
SMART |
|
low complexity region
|
734 |
753 |
N/A |
INTRINSIC |
|
low complexity region
|
754 |
766 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000077890
|
| SMART Domains |
Protein: ENSMUSP00000077050
Gene: ENSMUSG00000036555
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
33 |
53 |
N/A |
INTRINSIC |
|
coiled coil region
|
112 |
145 |
N/A |
INTRINSIC |
|
coiled coil region
|
167 |
221 |
N/A |
INTRINSIC |
|
coiled coil region
|
242 |
278 |
N/A |
INTRINSIC |
|
low complexity region
|
300 |
317 |
N/A |
INTRINSIC |
|
coiled coil region
|
353 |
446 |
N/A |
INTRINSIC |
|
IQ
|
507 |
529 |
1.36e-3 |
SMART |
|
low complexity region
|
534 |
553 |
N/A |
INTRINSIC |
|
IQ
|
569 |
591 |
1.63e-1 |
SMART |
|
low complexity region
|
628 |
647 |
N/A |
INTRINSIC |
|
low complexity region
|
717 |
736 |
N/A |
INTRINSIC |
|
low complexity region
|
737 |
749 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000100505
|
| SMART Domains |
Protein: ENSMUSP00000098074
Gene: ENSMUSG00000000148
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
21 |
33 |
N/A |
INTRINSIC |
|
low complexity region
|
135 |
150 |
N/A |
INTRINSIC |
|
low complexity region
|
447 |
458 |
N/A |
INTRINSIC |
|
low complexity region
|
488 |
499 |
N/A |
INTRINSIC |
|
low complexity region
|
531 |
543 |
N/A |
INTRINSIC |
|
Pfam:HEAT
|
546 |
576 |
4.4e-6 |
PFAM |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000110806
|
| SMART Domains |
Protein: ENSMUSP00000106429
Gene: ENSMUSG00000000148
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
90 |
105 |
N/A |
INTRINSIC |
|
low complexity region
|
402 |
413 |
N/A |
INTRINSIC |
|
low complexity region
|
443 |
454 |
N/A |
INTRINSIC |
|
low complexity region
|
486 |
498 |
N/A |
INTRINSIC |
|
Pfam:HEAT
|
501 |
531 |
4.2e-6 |
PFAM |
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000123683
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000124892
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000131905
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000139382
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000149674
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000136385
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000142081
|
| SMART Domains |
Protein: ENSMUSP00000120637
Gene: ENSMUSG00000036555
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
33 |
53 |
N/A |
INTRINSIC |
|
low complexity region
|
128 |
139 |
N/A |
INTRINSIC |
|
coiled coil region
|
157 |
185 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000135028
|
| SMART Domains |
Protein: ENSMUSP00000143397
Gene: ENSMUSG00000036555
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
33 |
53 |
N/A |
INTRINSIC |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000153440
|
| SMART Domains |
Protein: ENSMUSP00000114216
Gene: ENSMUSG00000000148
| Domain | Start | End | E-Value | Type |
|---|
|
SCOP:d1gw5a_
|
2 |
172 |
2e-3 |
SMART |
|
| Meta Mutation Damage Score |
0.0898 |
| Coding Region Coverage |
- 1x: 99.2%
- 3x: 98.5%
- 10x: 97.1%
- 20x: 95.0%
|
| Validation Efficiency |
98% (52/53) |
| MGI Phenotype |
FUNCTION: A similar gene in human encodes a Breast Cancer 1 (BRCA1) interacting protein that is involved in cell cycle checkpoint signaling. The similar human protein is localized to DNA double strand breaks caused by ionizing radiation, and regulates cellular DNA damage response through interactions with Ataxia Telangiectasia Mutated (ATM) and DNA-dependent Protein Kinase. A pseudogene of this gene is located on chromosome 3. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Jan 2013]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 47 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| 0610040J01Rik |
G |
T |
5: 64,056,182 (GRCm39) |
|
probably benign |
Het |
| Atg4a-ps |
A |
G |
3: 103,553,171 (GRCm39) |
Y57H |
probably damaging |
Het |
| Bag4 |
C |
T |
8: 26,259,516 (GRCm39) |
A228T |
probably benign |
Het |
| Bms1 |
G |
A |
6: 118,360,808 (GRCm39) |
T1220I |
probably damaging |
Het |
| Cds2 |
T |
A |
2: 132,136,366 (GRCm39) |
Y39* |
probably null |
Het |
| Chrnd |
T |
A |
1: 87,125,099 (GRCm39) |
L384Q |
probably damaging |
Het |
| Cpa3 |
A |
T |
3: 20,282,981 (GRCm39) |
Y155* |
probably null |
Het |
| Crlf1 |
G |
A |
8: 70,953,606 (GRCm39) |
W260* |
probably null |
Het |
| Cux1 |
C |
G |
5: 136,341,576 (GRCm39) |
E605D |
probably damaging |
Het |
| Cylc2 |
C |
G |
4: 51,229,651 (GRCm39) |
T331R |
unknown |
Het |
| Dmtf1 |
T |
C |
5: 9,186,085 (GRCm39) |
N167S |
probably damaging |
Het |
| Dnaaf9 |
A |
G |
2: 130,609,567 (GRCm39) |
I372T |
probably damaging |
Het |
| Dnai7 |
A |
T |
6: 145,128,944 (GRCm39) |
|
probably null |
Het |
| Dtx2 |
T |
A |
5: 136,040,930 (GRCm39) |
W112R |
probably damaging |
Het |
| Elf3 |
A |
G |
1: 135,184,582 (GRCm39) |
I138T |
probably damaging |
Het |
| F11 |
T |
A |
8: 45,694,511 (GRCm39) |
I617F |
probably damaging |
Het |
| Fdps |
A |
T |
3: 89,008,093 (GRCm39) |
D8E |
possibly damaging |
Het |
| Fzd10 |
C |
A |
5: 128,678,340 (GRCm39) |
T20K |
probably benign |
Het |
| Gm9978 |
T |
A |
10: 78,322,750 (GRCm39) |
|
noncoding transcript |
Het |
| Gpr158 |
T |
A |
2: 21,831,810 (GRCm39) |
M970K |
probably damaging |
Het |
| Has1 |
C |
T |
17: 18,064,257 (GRCm39) |
V461M |
probably benign |
Het |
| Hdac3 |
C |
T |
18: 38,085,566 (GRCm39) |
G80D |
probably benign |
Het |
| Klk12 |
A |
T |
7: 43,422,807 (GRCm39) |
R245W |
probably damaging |
Het |
| Lamp5 |
A |
G |
2: 135,900,940 (GRCm39) |
I47V |
probably damaging |
Het |
| Or6c1b |
T |
C |
10: 129,272,933 (GRCm39) |
I84T |
probably benign |
Het |
| Ovgp1 |
A |
G |
3: 105,885,027 (GRCm39) |
D122G |
probably benign |
Het |
| Piezo1 |
T |
C |
8: 123,213,135 (GRCm39) |
E1875G |
probably benign |
Het |
| Pih1d1 |
A |
G |
7: 44,807,921 (GRCm39) |
M132V |
possibly damaging |
Het |
| Pon2 |
C |
T |
6: 5,267,021 (GRCm39) |
A241T |
probably benign |
Het |
| Prkce |
A |
G |
17: 86,927,339 (GRCm39) |
I538V |
possibly damaging |
Het |
| Rab36 |
C |
T |
10: 74,887,875 (GRCm39) |
R249* |
probably null |
Het |
| Rps6kl1 |
C |
T |
12: 85,194,582 (GRCm39) |
A110T |
probably damaging |
Het |
| Rsad1 |
T |
C |
11: 94,435,356 (GRCm39) |
T244A |
probably benign |
Het |
| Slc22a7 |
T |
C |
17: 46,743,436 (GRCm39) |
I532V |
probably benign |
Het |
| Slc2a7 |
T |
C |
4: 150,247,731 (GRCm39) |
V377A |
possibly damaging |
Het |
| Slx4 |
A |
G |
16: 3,806,919 (GRCm39) |
V508A |
possibly damaging |
Het |
| Stag2 |
A |
G |
X: 41,322,749 (GRCm39) |
S400G |
probably benign |
Het |
| Stat6 |
T |
G |
10: 127,487,097 (GRCm39) |
I201M |
probably damaging |
Het |
| Stim2 |
T |
C |
5: 54,273,536 (GRCm39) |
|
probably null |
Het |
| Tbc1d9 |
A |
G |
8: 83,937,107 (GRCm39) |
Y63C |
probably damaging |
Het |
| Tctn2 |
T |
C |
5: 124,758,252 (GRCm39) |
|
noncoding transcript |
Het |
| Tmem181a |
T |
A |
17: 6,346,061 (GRCm39) |
L185H |
probably damaging |
Het |
| Ubr5 |
T |
A |
15: 38,004,580 (GRCm39) |
T1282S |
probably damaging |
Het |
| Ufl1 |
A |
T |
4: 25,254,806 (GRCm39) |
I550N |
probably damaging |
Het |
| Uty |
A |
G |
Y: 1,158,372 (GRCm39) |
V557A |
possibly damaging |
Het |
| Vmn1r54 |
T |
C |
6: 90,246,253 (GRCm39) |
S56P |
probably damaging |
Het |
| Zfp980 |
G |
A |
4: 145,428,653 (GRCm39) |
G461S |
probably benign |
Het |
|
| Other mutations in Brat1 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL01107:Brat1
|
APN |
5 |
140,702,932 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01327:Brat1
|
APN |
5 |
140,703,963 (GRCm39) |
nonsense |
probably null |
|
|
IGL01897:Brat1
|
APN |
5 |
140,703,670 (GRCm39) |
missense |
probably benign |
0.00 |
|
IGL01965:Brat1
|
APN |
5 |
140,703,811 (GRCm39) |
missense |
probably benign |
0.01 |
|
IGL02437:Brat1
|
APN |
5 |
140,698,563 (GRCm39) |
missense |
possibly damaging |
0.91 |
|
IGL03350:Brat1
|
APN |
5 |
140,691,750 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0394:Brat1
|
UTSW |
5 |
140,704,141 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1256:Brat1
|
UTSW |
5 |
140,695,962 (GRCm39) |
missense |
possibly damaging |
0.87 |
|
R1426:Brat1
|
UTSW |
5 |
140,703,768 (GRCm39) |
missense |
probably benign |
0.00 |
|
R1474:Brat1
|
UTSW |
5 |
140,698,382 (GRCm39) |
missense |
probably benign |
|
|
R1848:Brat1
|
UTSW |
5 |
140,704,264 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R2205:Brat1
|
UTSW |
5 |
140,690,888 (GRCm39) |
intron |
probably benign |
|
|
R3901:Brat1
|
UTSW |
5 |
140,703,751 (GRCm39) |
missense |
possibly damaging |
0.77 |
|
R3902:Brat1
|
UTSW |
5 |
140,703,751 (GRCm39) |
missense |
possibly damaging |
0.77 |
|
R4751:Brat1
|
UTSW |
5 |
140,704,051 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5795:Brat1
|
UTSW |
5 |
140,698,827 (GRCm39) |
missense |
probably benign |
0.01 |
|
R6151:Brat1
|
UTSW |
5 |
140,691,716 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7162:Brat1
|
UTSW |
5 |
140,696,004 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8247:Brat1
|
UTSW |
5 |
140,698,893 (GRCm39) |
missense |
possibly damaging |
0.88 |
|
R8901:Brat1
|
UTSW |
5 |
140,698,608 (GRCm39) |
missense |
probably benign |
0.17 |
|
R8934:Brat1
|
UTSW |
5 |
140,696,004 (GRCm39) |
missense |
probably benign |
0.00 |
|
R9742:Brat1
|
UTSW |
5 |
140,703,912 (GRCm39) |
missense |
probably benign |
0.00 |
|
R9797:Brat1
|
UTSW |
5 |
140,704,273 (GRCm39) |
missense |
probably damaging |
1.00 |
|
X0026:Brat1
|
UTSW |
5 |
140,700,693 (GRCm39) |
missense |
probably benign |
0.00 |
|
| Predicted Primers |
PCR Primer
(F):5'- GAGTGAGACTTGAAGCTGGC -3'
(R):5'- TGACATGCATCGTCCGTAC -3'
Sequencing Primer
(F):5'- AGGTGGAGCCAATTCCCG -3'
(R):5'- GTCCGTACCTCCCAAATCCGG -3'
|
| Posted On |
2015-07-21 |
Incidental Mutation