Incidental Mutation 'R4431:Lhfpl4'
ID 328613
Institutional Source Beutler Lab
Gene Symbol Lhfpl4
Ensembl Gene ENSMUSG00000042873
Gene Name lipoma HMGIC fusion partner-like protein 4
Synonyms 1190004M23Rik
MMRRC Submission 041146-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.075) question?
Stock # R4431 (G1)
Quality Score 158
Status Validated
Chromosome 6
Chromosomal Location 113145051-113172345 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 113170805 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Isoleucine to Threonine at position 127 (I127T)
Ref Sequence ENSEMBL: ENSMUSP00000124470 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000162280]
AlphaFold Q5U4E0
Predicted Effect possibly damaging
Transcript: ENSMUST00000162280
AA Change: I127T

PolyPhen 2 Score 0.564 (Sensitivity: 0.88; Specificity: 0.91)
SMART Domains Protein: ENSMUSP00000124470
Gene: ENSMUSG00000042873
AA Change: I127T

DomainStartEndE-ValueType
Pfam:L_HGMIC_fpl 22 200 2.9e-71 PFAM
Predicted Effect unknown
Transcript: ENSMUST00000203665
AA Change: I33T
Meta Mutation Damage Score 0.2784 question?
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.3%
  • 20x: 95.3%
Validation Efficiency 100% (52/52)
MGI Phenotype FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene is a member of the lipoma HMGIC fusion partner (LHFP) gene family, which is a subset of the superfamily of tetraspan transmembrane protein encoding genes. Mutations in one LHFP-like gene result in deafness in humans and mice, and a second LHFP-like gene is fused to a high-mobility group gene in a translocation-associated lipoma. [provided by RefSeq, Jul 2008]
PHENOTYPE: Homozygous knockout affects inhibitory postsynaptic currents in the hippocampus. [provided by MGI curators]
Allele List at MGI
Other mutations in this stock
Total: 50 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
0610040J01Rik G T 5: 64,056,182 (GRCm39) probably benign Het
2510039O18Rik T C 4: 148,026,022 (GRCm39) S181P probably benign Het
4930522L14Rik A T 5: 109,884,440 (GRCm39) C473S possibly damaging Het
4930523C07Rik A T 1: 159,872,149 (GRCm39) noncoding transcript Het
Aak1 A G 6: 86,963,300 (GRCm39) K910R unknown Het
Abca2 A G 2: 25,332,864 (GRCm39) D1521G probably benign Het
Adamts20 C A 15: 94,241,924 (GRCm39) D695Y probably damaging Het
Bag4 C T 8: 26,259,516 (GRCm39) A228T probably benign Het
Bltp3a A G 17: 28,104,905 (GRCm39) N533S probably damaging Het
Bspry T A 4: 62,400,904 (GRCm39) I132N possibly damaging Het
Cfap300 A G 9: 8,027,178 (GRCm39) V120A probably damaging Het
Cfh T C 1: 140,064,004 (GRCm39) Y424C probably damaging Het
Chd2 T C 7: 73,085,709 (GRCm39) R1642G possibly damaging Het
Chrm2 A G 6: 36,501,097 (GRCm39) D318G probably benign Het
Chrna4 A G 2: 180,670,413 (GRCm39) S448P probably damaging Het
Cldn8 A C 16: 88,359,619 (GRCm39) M102R probably damaging Het
Dock8 T C 19: 25,042,754 (GRCm39) V112A probably benign Het
Fbxo42 C A 4: 140,927,861 (GRCm39) R714S probably damaging Het
Fmo1 G A 1: 162,661,281 (GRCm39) A334V possibly damaging Het
Gpr68 A T 12: 100,865,650 (GRCm39) probably benign Het
Gramd4 A G 15: 86,014,361 (GRCm39) K345R probably damaging Het
Gtpbp1 T G 15: 79,600,398 (GRCm39) S444A probably damaging Het
Ints12 T C 3: 132,808,242 (GRCm39) Y207H probably damaging Het
Kat2b-ps A T 5: 93,540,443 (GRCm39) noncoding transcript Het
Klhl25 T A 7: 75,515,162 (GRCm39) F23I probably damaging Het
Lamc1 A G 1: 153,097,274 (GRCm39) I1590T probably damaging Het
Lrrc71 A G 3: 87,650,143 (GRCm39) S286P possibly damaging Het
Man1c1 A T 4: 134,430,329 (GRCm39) V151D probably damaging Het
Mipol1 G A 12: 57,350,310 (GRCm39) R36Q possibly damaging Het
Nuggc T A 14: 65,848,659 (GRCm39) W187R probably benign Het
Or4a71 A G 2: 89,357,987 (GRCm39) Y256H probably damaging Het
Pkhd1 G A 1: 20,593,538 (GRCm39) T1525I probably damaging Het
Pomp A G 5: 147,812,289 (GRCm39) E125G probably damaging Het
Ptar1 G T 19: 23,671,695 (GRCm39) G33C probably damaging Het
Ptpn3 A G 4: 57,235,355 (GRCm39) S335P probably damaging Het
Pus7 A G 5: 23,951,487 (GRCm39) Y521H probably benign Het
Shank1 C T 7: 43,969,076 (GRCm39) R324* probably null Het
Slc12a3 A T 8: 95,069,713 (GRCm39) I541F probably damaging Het
Slc12a9 G A 5: 137,319,775 (GRCm39) P580L probably benign Het
Spz1 A G 13: 92,711,837 (GRCm39) L213P probably damaging Het
Strn A G 17: 79,043,891 (GRCm39) V9A probably damaging Het
Sytl5 A T X: 9,826,262 (GRCm39) N412Y probably damaging Het
Tert T A 13: 73,775,594 (GRCm39) F115Y probably damaging Het
Tmem67 T A 4: 12,051,473 (GRCm39) N785I possibly damaging Het
Trf T C 9: 103,089,075 (GRCm39) N243S possibly damaging Het
Ttc3 T C 16: 94,211,817 (GRCm39) probably null Het
Vmn2r22 T C 6: 123,614,817 (GRCm39) T258A possibly damaging Het
Vps13b A C 15: 35,770,899 (GRCm39) Q2114P probably damaging Het
Wdfy1 T A 1: 79,691,583 (GRCm39) R275* probably null Het
Wnt2b A G 3: 104,860,256 (GRCm39) L217S probably damaging Het
Other mutations in Lhfpl4
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01106:Lhfpl4 APN 6 113,170,824 (GRCm39) missense probably benign 0.30
IGL01485:Lhfpl4 APN 6 113,171,082 (GRCm39) missense probably benign 0.25
R1610:Lhfpl4 UTSW 6 113,171,097 (GRCm39) missense possibly damaging 0.80
R1868:Lhfpl4 UTSW 6 113,153,394 (GRCm39) missense probably benign 0.00
R3821:Lhfpl4 UTSW 6 113,171,069 (GRCm39) missense probably benign 0.36
R7097:Lhfpl4 UTSW 6 113,153,632 (GRCm39) missense probably benign 0.01
R7102:Lhfpl4 UTSW 6 113,171,106 (GRCm39) missense possibly damaging 0.94
R7122:Lhfpl4 UTSW 6 113,153,632 (GRCm39) missense probably benign 0.01
R7401:Lhfpl4 UTSW 6 113,153,627 (GRCm39) missense possibly damaging 0.52
R8738:Lhfpl4 UTSW 6 113,171,034 (GRCm39) missense possibly damaging 0.57
R9650:Lhfpl4 UTSW 6 113,171,147 (GRCm39) missense probably benign 0.03
Predicted Primers PCR Primer
(F):5'- TTGAATGTTCTCCCCAGTAGC -3'
(R):5'- ACGTGGTGGTCTTCATCCAG -3'

Sequencing Primer
(F):5'- CAGTAGCTGCTGAGAGCTG -3'
(R):5'- AAGCCTGGCTACTTCGGC -3'
Posted On 2015-07-21