Incidental Mutation 'IGL02267:Tns1'
| ID |
286953 |
| Institutional Source |
Australian Phenomics Network
(link to record)
|
| Gene Symbol |
Tns1
|
| Ensembl Gene |
ENSMUSG00000055322 |
| Gene Name |
tensin 1 |
| Synonyms |
E030018G17Rik, 1110018I21Rik, E030037J05Rik, 1200014E20Rik, Tns |
| Accession Numbers |
|
| Essential gene? |
Possibly essential
(E-score: 0.528)
|
| Stock # |
IGL02267
|
| Quality Score |
|
|
Status
|
|
| Chromosome |
1 |
| Chromosomal Location |
73949390-74163608 bp(-) (GRCm39) |
| Type of Mutation |
missense |
| DNA Base Change (assembly) |
T to C
at 74031290 bp (GRCm39)
|
| Zygosity |
Heterozygous |
| Amino Acid Change |
Aspartic acid to Glycine
at position 275
(D275G)
|
| Ref Sequence |
ENSEMBL: ENSMUSP00000140317
(fasta)
|
| Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000169786]
[ENSMUST00000187584]
[ENSMUST00000188208]
[ENSMUST00000191104]
[ENSMUST00000212888]
[ENSMUST00000190389]
|
| AlphaFold |
E9Q0S6 |
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000169786
AA Change: D275G
PolyPhen 2
Score 0.880 (Sensitivity: 0.82; Specificity: 0.94)
|
| SMART Domains |
Protein: ENSMUSP00000127715
Gene: ENSMUSG00000055322
AA Change: D275G
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
15 |
33 |
N/A |
INTRINSIC |
|
C1
|
62 |
108 |
1.77e-2 |
SMART |
|
low complexity region
|
154 |
167 |
N/A |
INTRINSIC |
|
SCOP:d1d5ra2
|
176 |
348 |
3e-32 |
SMART |
|
PTEN_C2
|
350 |
477 |
1.12e-51 |
SMART |
|
low complexity region
|
822 |
833 |
N/A |
INTRINSIC |
|
low complexity region
|
905 |
922 |
N/A |
INTRINSIC |
|
low complexity region
|
1227 |
1239 |
N/A |
INTRINSIC |
|
low complexity region
|
1284 |
1300 |
N/A |
INTRINSIC |
|
low complexity region
|
1459 |
1470 |
N/A |
INTRINSIC |
|
low complexity region
|
1518 |
1530 |
N/A |
INTRINSIC |
|
SH2
|
1614 |
1716 |
6.85e-17 |
SMART |
|
PTB
|
1747 |
1888 |
1.69e-29 |
SMART |
|
| Predicted Effect |
unknown
Transcript: ENSMUST00000185331
AA Change: D105G
|
| Predicted Effect |
unknown
Transcript: ENSMUST00000185702
AA Change: D105G
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000186381
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000187281
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000187584
AA Change: D231G
PolyPhen 2
Score 0.918 (Sensitivity: 0.81; Specificity: 0.94)
|
| SMART Domains |
Protein: ENSMUSP00000140254
Gene: ENSMUSG00000055322
AA Change: D231G
| Domain | Start | End | E-Value | Type |
|---|
|
C1
|
21 |
67 |
8.6e-5 |
SMART |
|
low complexity region
|
113 |
124 |
N/A |
INTRINSIC |
|
PTPc_DSPc
|
197 |
319 |
9.9e-6 |
SMART |
|
PTEN_C2
|
306 |
433 |
5.6e-56 |
SMART |
|
low complexity region
|
778 |
789 |
N/A |
INTRINSIC |
|
low complexity region
|
861 |
878 |
N/A |
INTRINSIC |
|
low complexity region
|
1162 |
1174 |
N/A |
INTRINSIC |
|
low complexity region
|
1219 |
1235 |
N/A |
INTRINSIC |
|
low complexity region
|
1394 |
1405 |
N/A |
INTRINSIC |
|
low complexity region
|
1453 |
1465 |
N/A |
INTRINSIC |
|
SH2
|
1549 |
1651 |
4.3e-19 |
SMART |
|
PTB
|
1682 |
1823 |
9e-32 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000188208
|
| SMART Domains |
Protein: ENSMUSP00000140837
Gene: ENSMUSG00000055322
| Domain | Start | End | E-Value | Type |
|---|
|
C1
|
16 |
62 |
8.6e-5 |
SMART |
|
low complexity region
|
108 |
119 |
N/A |
INTRINSIC |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000191104
AA Change: D275G
PolyPhen 2
Score 0.954 (Sensitivity: 0.79; Specificity: 0.95)
|
| SMART Domains |
Protein: ENSMUSP00000140317
Gene: ENSMUSG00000055322
AA Change: D275G
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
15 |
33 |
N/A |
INTRINSIC |
|
C1
|
62 |
108 |
8.6e-5 |
SMART |
|
low complexity region
|
154 |
167 |
N/A |
INTRINSIC |
|
PTPc_DSPc
|
241 |
363 |
9.9e-6 |
SMART |
|
PTEN_C2
|
350 |
477 |
5.6e-56 |
SMART |
|
low complexity region
|
822 |
833 |
N/A |
INTRINSIC |
|
low complexity region
|
905 |
922 |
N/A |
INTRINSIC |
|
low complexity region
|
1206 |
1218 |
N/A |
INTRINSIC |
|
low complexity region
|
1263 |
1279 |
N/A |
INTRINSIC |
|
low complexity region
|
1438 |
1449 |
N/A |
INTRINSIC |
|
low complexity region
|
1497 |
1509 |
N/A |
INTRINSIC |
|
SH2
|
1593 |
1695 |
4.3e-19 |
SMART |
|
PTB
|
1726 |
1867 |
9e-32 |
SMART |
|
| Predicted Effect |
possibly damaging
Transcript: ENSMUST00000212888
AA Change: D275G
PolyPhen 2
Score 0.877 (Sensitivity: 0.83; Specificity: 0.94)
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000189571
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000191264
|
| Predicted Effect |
noncoding transcript
Transcript: ENSMUST00000188436
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000190389
|
| SMART Domains |
Protein: ENSMUSP00000140448
Gene: ENSMUSG00000055322
| Domain | Start | End | E-Value | Type |
|---|
|
low complexity region
|
46 |
59 |
N/A |
INTRINSIC |
|
PDB:3AWF|C
|
68 |
137 |
8e-10 |
PDB |
|
SCOP:d1d5ra2
|
68 |
142 |
5e-8 |
SMART |
|
| Predicted Effect |
probably benign
Transcript: ENSMUST00000191204
|
| Coding Region Coverage |
|
| Validation Efficiency |
|
| MGI Phenotype |
FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] The protein encoded by this gene localizes to focal adhesions, regions of the plasma membrane where the cell attaches to the extracellular matrix. This protein crosslinks actin filaments and contains a Src homology 2 (SH2) domain, which is often found in molecules involved in signal transduction. This protein is a substrate of calpain II. Alternative splicing results in multiple transcript variants encoding different isoforms. [provided by RefSeq, Apr 2015]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit reduced female fertility, and develop kidney cysts and progressive kidney degeneration that may lead to death from renal failure. [provided by MGI curators]
|
| Allele List at MGI |
|
| Other mutations in this stock |
Total: 51 list
| Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
|---|
| Adamts2 |
A |
G |
11: 50,683,505 (GRCm39) |
Q929R |
probably benign |
Het |
| Aplf |
A |
T |
6: 87,635,946 (GRCm39) |
D122E |
probably damaging |
Het |
| Atp2a3 |
T |
A |
11: 72,878,810 (GRCm39) |
L874Q |
probably damaging |
Het |
| Atp2b2 |
A |
T |
6: 113,770,691 (GRCm39) |
L406Q |
probably damaging |
Het |
| Atp6v1b1 |
A |
G |
6: 83,733,891 (GRCm39) |
D374G |
probably benign |
Het |
| Bcas1 |
T |
A |
2: 170,220,708 (GRCm39) |
R239* |
probably null |
Het |
| Bhmt2 |
A |
G |
13: 93,805,854 (GRCm39) |
V56A |
probably damaging |
Het |
| Cage1 |
T |
C |
13: 38,207,233 (GRCm39) |
E204G |
probably damaging |
Het |
| Ccdc157 |
G |
A |
11: 4,094,035 (GRCm39) |
A532V |
probably benign |
Het |
| Cd300lb |
G |
A |
11: 114,819,303 (GRCm39) |
R109* |
probably null |
Het |
| Clca4c-ps |
T |
C |
3: 144,585,516 (GRCm39) |
|
noncoding transcript |
Het |
| Ctnna3 |
G |
T |
10: 64,781,777 (GRCm39) |
V747F |
probably benign |
Het |
| Cyp2c29 |
A |
T |
19: 39,318,866 (GRCm39) |
I488F |
probably benign |
Het |
| Cyp3a25 |
T |
C |
5: 145,935,362 (GRCm39) |
M85V |
possibly damaging |
Het |
| Dnah7b |
T |
A |
1: 46,266,090 (GRCm39) |
Y2220N |
probably damaging |
Het |
| Espl1 |
A |
G |
15: 102,224,099 (GRCm39) |
I1217V |
probably benign |
Het |
| Exoc2 |
A |
G |
13: 30,999,304 (GRCm39) |
S918P |
probably benign |
Het |
| Fer1l4 |
T |
A |
2: 155,873,172 (GRCm39) |
I1303F |
possibly damaging |
Het |
| Gm28047 |
A |
T |
15: 102,455,662 (GRCm39) |
I234K |
probably damaging |
Het |
| Gpcpd1 |
A |
G |
2: 132,410,630 (GRCm39) |
V19A |
probably damaging |
Het |
| Gprin3 |
A |
G |
6: 59,331,458 (GRCm39) |
V283A |
probably benign |
Het |
| Grb14 |
A |
G |
2: 64,783,960 (GRCm39) |
Y56H |
probably damaging |
Het |
| Greb1 |
A |
G |
12: 16,767,209 (GRCm39) |
F331S |
probably benign |
Het |
| Iigp1c |
T |
G |
18: 60,379,470 (GRCm39) |
V335G |
probably damaging |
Het |
| Jkamp |
A |
G |
12: 72,141,591 (GRCm39) |
Y198C |
probably damaging |
Het |
| Klk1b11 |
G |
T |
7: 43,649,165 (GRCm39) |
C234F |
probably damaging |
Het |
| Nacad |
T |
C |
11: 6,552,649 (GRCm39) |
T181A |
probably benign |
Het |
| Or1e23 |
A |
G |
11: 73,407,375 (GRCm39) |
S217P |
probably benign |
Het |
| Or2m13 |
A |
T |
16: 19,225,914 (GRCm39) |
L285Q |
possibly damaging |
Het |
| Or5ak4 |
T |
A |
2: 85,161,465 (GRCm39) |
Y259F |
probably damaging |
Het |
| Pitpnm3 |
A |
T |
11: 71,962,274 (GRCm39) |
I227N |
probably benign |
Het |
| Pnn |
A |
G |
12: 59,116,995 (GRCm39) |
E189G |
probably damaging |
Het |
| Pnpla2 |
C |
A |
7: 141,038,122 (GRCm39) |
P197T |
probably damaging |
Het |
| Pnpla6 |
A |
G |
8: 3,567,327 (GRCm39) |
T62A |
probably benign |
Het |
| Ptprq |
G |
T |
10: 107,482,419 (GRCm39) |
D1051E |
probably damaging |
Het |
| Rag2 |
C |
T |
2: 101,460,376 (GRCm39) |
R229C |
probably damaging |
Het |
| Serinc1 |
A |
T |
10: 57,399,204 (GRCm39) |
I196N |
probably damaging |
Het |
| Slc26a4 |
C |
T |
12: 31,578,853 (GRCm39) |
|
probably benign |
Het |
| Slc26a9 |
T |
C |
1: 131,680,583 (GRCm39) |
C43R |
probably damaging |
Het |
| Slc2a3 |
A |
T |
6: 122,716,931 (GRCm39) |
Y44N |
probably benign |
Het |
| Smad5 |
T |
G |
13: 56,883,603 (GRCm39) |
|
probably benign |
Het |
| Sugct |
C |
A |
13: 17,819,450 (GRCm39) |
V132F |
possibly damaging |
Het |
| Supt6 |
T |
C |
11: 78,117,030 (GRCm39) |
E568G |
possibly damaging |
Het |
| Tfpt |
T |
C |
7: 3,631,982 (GRCm39) |
T43A |
probably damaging |
Het |
| Timp4 |
A |
T |
6: 115,224,240 (GRCm39) |
V143E |
possibly damaging |
Het |
| Trib1 |
A |
G |
15: 59,523,449 (GRCm39) |
E161G |
probably damaging |
Het |
| Trpc7 |
A |
T |
13: 57,008,743 (GRCm39) |
L308Q |
probably damaging |
Het |
| Ush1c |
A |
T |
7: 45,858,722 (GRCm39) |
V522E |
possibly damaging |
Het |
| Usp28 |
T |
C |
9: 48,935,265 (GRCm39) |
V449A |
probably damaging |
Het |
| Vmn1r82 |
A |
G |
7: 12,039,273 (GRCm39) |
Y64C |
probably damaging |
Het |
| Wwox |
G |
A |
8: 115,438,805 (GRCm39) |
M290I |
probably benign |
Het |
|
| Other mutations in Tns1 |
| Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
|---|
|
IGL00954:Tns1
|
APN |
1 |
73,964,128 (GRCm39) |
missense |
probably damaging |
0.99 |
|
IGL01288:Tns1
|
APN |
1 |
73,992,969 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01536:Tns1
|
APN |
1 |
73,958,807 (GRCm39) |
splice site |
probably benign |
|
|
IGL01568:Tns1
|
APN |
1 |
73,992,668 (GRCm39) |
missense |
probably damaging |
1.00 |
|
IGL01683:Tns1
|
APN |
1 |
73,992,428 (GRCm39) |
missense |
probably damaging |
0.98 |
|
IGL02597:Tns1
|
APN |
1 |
74,025,032 (GRCm39) |
critical splice donor site |
probably null |
|
|
IGL02819:Tns1
|
APN |
1 |
73,976,407 (GRCm39) |
missense |
probably damaging |
0.99 |
|
IGL03370:Tns1
|
APN |
1 |
74,025,053 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0087:Tns1
|
UTSW |
1 |
73,956,076 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R0207:Tns1
|
UTSW |
1 |
73,976,477 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
R0411:Tns1
|
UTSW |
1 |
73,964,920 (GRCm39) |
missense |
probably damaging |
0.96 |
|
R0543:Tns1
|
UTSW |
1 |
73,991,856 (GRCm39) |
missense |
probably benign |
0.01 |
|
R0552:Tns1
|
UTSW |
1 |
73,959,722 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R0720:Tns1
|
UTSW |
1 |
73,964,740 (GRCm39) |
missense |
probably benign |
0.03 |
|
R0828:Tns1
|
UTSW |
1 |
73,958,825 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1034:Tns1
|
UTSW |
1 |
73,981,128 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1061:Tns1
|
UTSW |
1 |
73,956,831 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R1819:Tns1
|
UTSW |
1 |
73,955,635 (GRCm39) |
splice site |
probably benign |
|
|
R1826:Tns1
|
UTSW |
1 |
73,992,793 (GRCm39) |
start codon destroyed |
probably null |
0.91 |
|
R2208:Tns1
|
UTSW |
1 |
74,118,399 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R3723:Tns1
|
UTSW |
1 |
73,964,099 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R4079:Tns1
|
UTSW |
1 |
74,034,467 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4111:Tns1
|
UTSW |
1 |
73,981,091 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4155:Tns1
|
UTSW |
1 |
73,953,790 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4156:Tns1
|
UTSW |
1 |
73,953,790 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4157:Tns1
|
UTSW |
1 |
73,953,790 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4274:Tns1
|
UTSW |
1 |
73,967,257 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4426:Tns1
|
UTSW |
1 |
74,024,908 (GRCm39) |
missense |
probably damaging |
0.97 |
|
R4649:Tns1
|
UTSW |
1 |
73,992,930 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R4742:Tns1
|
UTSW |
1 |
74,163,449 (GRCm39) |
critical splice donor site |
probably null |
|
|
R4869:Tns1
|
UTSW |
1 |
73,991,774 (GRCm39) |
missense |
probably benign |
|
|
R4961:Tns1
|
UTSW |
1 |
73,975,074 (GRCm39) |
missense |
probably benign |
0.35 |
|
R5025:Tns1
|
UTSW |
1 |
73,964,641 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5035:Tns1
|
UTSW |
1 |
73,992,979 (GRCm39) |
start gained |
probably benign |
|
|
R5062:Tns1
|
UTSW |
1 |
73,992,023 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5080:Tns1
|
UTSW |
1 |
73,992,099 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5213:Tns1
|
UTSW |
1 |
73,992,771 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R5256:Tns1
|
UTSW |
1 |
74,034,585 (GRCm39) |
intron |
probably benign |
|
|
R5368:Tns1
|
UTSW |
1 |
73,980,176 (GRCm39) |
missense |
probably benign |
0.07 |
|
R5391:Tns1
|
UTSW |
1 |
74,029,568 (GRCm39) |
splice site |
probably null |
|
|
R5587:Tns1
|
UTSW |
1 |
73,959,755 (GRCm39) |
missense |
possibly damaging |
0.94 |
|
R5735:Tns1
|
UTSW |
1 |
73,967,138 (GRCm39) |
missense |
probably benign |
0.00 |
|
R5855:Tns1
|
UTSW |
1 |
73,957,192 (GRCm39) |
missense |
possibly damaging |
0.83 |
|
R5999:Tns1
|
UTSW |
1 |
73,967,256 (GRCm39) |
nonsense |
probably null |
|
|
R6122:Tns1
|
UTSW |
1 |
73,991,578 (GRCm39) |
critical splice donor site |
probably null |
|
|
R6148:Tns1
|
UTSW |
1 |
73,992,612 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6457:Tns1
|
UTSW |
1 |
73,957,209 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R6525:Tns1
|
UTSW |
1 |
73,992,629 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6712:Tns1
|
UTSW |
1 |
74,118,460 (GRCm39) |
nonsense |
probably null |
|
|
R6773:Tns1
|
UTSW |
1 |
73,958,866 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R6825:Tns1
|
UTSW |
1 |
74,041,482 (GRCm39) |
nonsense |
probably null |
|
|
R7085:Tns1
|
UTSW |
1 |
73,964,621 (GRCm39) |
missense |
probably benign |
0.00 |
|
R7128:Tns1
|
UTSW |
1 |
74,034,463 (GRCm39) |
missense |
|
|
|
R7209:Tns1
|
UTSW |
1 |
73,993,074 (GRCm39) |
missense |
possibly damaging |
0.68 |
|
R7348:Tns1
|
UTSW |
1 |
73,956,076 (GRCm39) |
missense |
possibly damaging |
0.95 |
|
R7570:Tns1
|
UTSW |
1 |
73,992,638 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R7670:Tns1
|
UTSW |
1 |
73,991,636 (GRCm39) |
missense |
possibly damaging |
0.93 |
|
R7769:Tns1
|
UTSW |
1 |
73,992,530 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R7833:Tns1
|
UTSW |
1 |
74,130,490 (GRCm39) |
intron |
probably benign |
|
|
R8052:Tns1
|
UTSW |
1 |
73,992,596 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8225:Tns1
|
UTSW |
1 |
74,025,046 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8244:Tns1
|
UTSW |
1 |
73,976,410 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8321:Tns1
|
UTSW |
1 |
74,024,939 (GRCm39) |
critical splice acceptor site |
probably null |
|
|
R8344:Tns1
|
UTSW |
1 |
74,024,201 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8378:Tns1
|
UTSW |
1 |
73,976,405 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R8434:Tns1
|
UTSW |
1 |
73,964,765 (GRCm39) |
missense |
probably benign |
0.00 |
|
R8773:Tns1
|
UTSW |
1 |
73,976,407 (GRCm39) |
missense |
probably damaging |
0.99 |
|
R9211:Tns1
|
UTSW |
1 |
73,956,948 (GRCm39) |
missense |
possibly damaging |
0.63 |
|
R9251:Tns1
|
UTSW |
1 |
74,030,855 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9315:Tns1
|
UTSW |
1 |
73,980,141 (GRCm39) |
missense |
|
|
|
R9411:Tns1
|
UTSW |
1 |
73,992,662 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9592:Tns1
|
UTSW |
1 |
74,029,553 (GRCm39) |
missense |
probably damaging |
1.00 |
|
R9658:Tns1
|
UTSW |
1 |
73,981,183 (GRCm39) |
missense |
probably benign |
0.08 |
|
R9658:Tns1
|
UTSW |
1 |
73,981,182 (GRCm39) |
missense |
probably benign |
0.14 |
|
Z1177:Tns1
|
UTSW |
1 |
74,041,466 (GRCm39) |
missense |
probably benign |
0.12 |
|
| Posted On |
2015-04-16 |
Incidental Mutation