Mutagenetix > Incidental Mutation

Incidental Mutation 'R3618:Larp7'

268508

Institutional Source

Beutler Lab

Gene Symbol

Larp7

Ensembl Gene

ENSMUSG00000027968

Gene Name

La ribonucleoprotein 7, transcriptional regulator

Synonyms

D3Wsu161e, C330027G06Rik

MMRRC Submission

040675-MU

Accession Numbers

Essential gene?

Essential (E-score: 1.000) question?

Stock #

R3618 (G1)

Quality Score

215

Status

Not validated

Chromosome

Chromosomal Location

127330363-127346998 bp(-) (GRCm39)

Type of Mutation

nonsense

DNA Base Change (assembly)

C to A at 127330614 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Glutamic Acid to Stop codon at position 568 (E568*)

Ref Sequence

ENSEMBL: ENSMUSP00000029588 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000029588]

AlphaFold

Q05CL8

Predicted Effect

probably null
Transcript: ENSMUST00000029588
AA Change: E568*

SMART Domains

Protein: ENSMUSP00000029588
Gene: ENSMUSG00000027968
AA Change: E568*

Domain	Start	End	E-Value	Type
LA	26	106	1.29e-30	SMART
RRM	120	196	5.37e-15	SMART
low complexity region	210	226	N/A	INTRINSIC
low complexity region	257	273	N/A	INTRINSIC
low complexity region	302	311	N/A	INTRINSIC
low complexity region	350	364	N/A	INTRINSIC
Pfam:RRM_3	442	540	1.3e-31	PFAM

Coding Region Coverage

1x: 99.1%
3x: 98.5%
10x: 97.1%
20x: 94.6%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein which is found in the 7SK snRNP (small nuclear ribonucleoprotein). This snRNP complex inhibits a cyclin-dependent kinase, positive transcription elongation factor b, which is required for paused RNA polymerase II at a promoter to begin transcription elongation. A pseudogene of this gene is located on chromosome 3. Alternative splicing results in multiple transcript variants. [provided by RefSeq, May 2012]
PHENOTYPE: Mice homozygous for a null mutation display complete perinatal lethality and a decrease in primordial germ cell number and proliferation. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 38 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1110002E22Rik	A	G	3: 137,774,168 (GRCm39)	E1119G	probably damaging	Het
Ahnak2	A	G	12: 112,749,842 (GRCm39)	I132T	probably damaging	Het
Arhgap29	G	A	3: 121,782,176 (GRCm39)	D63N	possibly damaging	Het
Bsn	T	A	9: 107,994,760 (GRCm39)		probably null	Het
Cfap161	A	C	7: 83,429,390 (GRCm39)	Y209*	probably null	Het
Drp2	A	C	X: 133,340,717 (GRCm39)	D458A	probably benign	Het
Efcab6	T	C	15: 83,834,270 (GRCm39)	H446R	probably benign	Het
Enpep	G	C	3: 129,077,807 (GRCm39)	S603R	possibly damaging	Het
F13a1	G	A	13: 37,127,967 (GRCm39)	T337I	probably damaging	Het
Fhod3	TGAGGAGGAGGAGGAGGA	TGAGGAGGAGGAGGA	18: 25,153,722 (GRCm39)		probably benign	Het
Hcfc1	A	T	X: 72,993,694 (GRCm39)	V1157D	probably benign	Het
Inava	A	C	1: 136,142,110 (GRCm39)	V663G	probably benign	Het
Ino80	T	C	2: 119,277,353 (GRCm39)	D374G	probably null	Het
Kif1a	T	C	1: 93,004,765 (GRCm39)	E143G	probably null	Het
Larp1	A	T	11: 57,948,172 (GRCm39)	E990D	probably benign	Het
Ltn1	A	T	16: 87,217,787 (GRCm39)	S298R	probably damaging	Het
Mcm10	A	G	2: 5,001,913 (GRCm39)		probably null	Het
Mef2a	G	A	7: 66,918,075 (GRCm39)	S111L	probably benign	Het
Mroh1	A	G	15: 76,336,546 (GRCm39)	T1590A	possibly damaging	Het
Ncoa6	A	T	2: 155,249,709 (GRCm39)	H1198Q	possibly damaging	Het
Ogg1	A	G	6: 113,305,334 (GRCm39)	E49G	probably damaging	Het
Palm3	T	A	8: 84,755,973 (GRCm39)	V495E	probably benign	Het
Pam	A	G	1: 97,762,157 (GRCm39)	F809L	probably damaging	Het
Parp3	T	C	9: 106,352,262 (GRCm39)	E88G	possibly damaging	Het
Ptprs	A	G	17: 56,735,965 (GRCm39)	I156T	probably benign	Het
Pus7l	T	A	15: 94,425,788 (GRCm39)	I538F	probably damaging	Het
Rgs8	A	G	1: 153,566,742 (GRCm39)	T98A	probably null	Het
Ryr2	C	T	13: 11,787,466 (GRCm39)		probably null	Het
Slc8a2	A	G	7: 15,886,824 (GRCm39)	N656D	possibly damaging	Het
Stard9	C	T	2: 120,529,500 (GRCm39)	T1919I	possibly damaging	Het
Tbcel	T	C	9: 42,372,591 (GRCm39)		probably benign	Het
Trpv3	A	T	11: 73,186,281 (GRCm39)	I691F	probably damaging	Het
Uba2	A	G	7: 33,853,907 (GRCm39)		probably null	Het
Usp53	A	C	3: 122,728,061 (GRCm39)	S840R	probably benign	Het
Vmn2r100	A	T	17: 19,743,692 (GRCm39)	I452F	probably benign	Het
Zbtb48	A	T	4: 152,110,484 (GRCm39)		probably null	Het
Zfp385b	G	A	2: 77,246,233 (GRCm39)	P177S	probably benign	Het
Zfp42	T	C	8: 43,748,938 (GRCm39)	R188G	possibly damaging	Het

Other mutations in Larp7

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL02942:Larp7	APN	3	127,337,844 (GRCm39)	missense	possibly damaging	0.94
R0358:Larp7	UTSW	3	127,340,737 (GRCm39)	critical splice donor site	probably null
R0601:Larp7	UTSW	3	127,337,858 (GRCm39)	missense	probably damaging	1.00
R0714:Larp7	UTSW	3	127,340,833 (GRCm39)	missense	probably damaging	0.99
R0765:Larp7	UTSW	3	127,339,814 (GRCm39)	missense	probably damaging	1.00
R0865:Larp7	UTSW	3	127,337,884 (GRCm39)	missense	probably damaging	0.99
R1902:Larp7	UTSW	3	127,334,227 (GRCm39)	missense	probably damaging	1.00
R2125:Larp7	UTSW	3	127,336,779 (GRCm39)	missense	probably benign
R3721:Larp7	UTSW	3	127,340,460 (GRCm39)	missense	probably damaging	1.00
R4008:Larp7	UTSW	3	127,334,519 (GRCm39)	missense	probably benign	0.40
R4165:Larp7	UTSW	3	127,330,611 (GRCm39)	missense	probably benign	0.02
R4210:Larp7	UTSW	3	127,340,603 (GRCm39)	missense	probably benign	0.02
R4211:Larp7	UTSW	3	127,340,603 (GRCm39)	missense	probably benign	0.02
R4738:Larp7	UTSW	3	127,339,694 (GRCm39)	critical splice donor site	probably null
R5149:Larp7	UTSW	3	127,334,460 (GRCm39)	missense	probably damaging	0.99
R6703:Larp7	UTSW	3	127,337,873 (GRCm39)	missense	probably damaging	0.99
R6803:Larp7	UTSW	3	127,330,685 (GRCm39)	critical splice acceptor site	probably null
R7832:Larp7	UTSW	3	127,337,916 (GRCm39)	missense	possibly damaging	0.49
R9286:Larp7	UTSW	3	127,340,008 (GRCm39)	unclassified	probably benign
R9647:Larp7	UTSW	3	127,334,211 (GRCm39)	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- GAAATCTGAAGTTGCATTTGCG -3'
(R):5'- CAGCTTTTAAGTTCCTCAGCCTGATAG -3'

Sequencing Primer
(F):5'- GCGTAAATTCAAAAGTAAGGGTGTTC -3'
(R):5'- CCTCAGCCTGATAGTGGTAAG -3'

Posted On

2015-02-19