Incidental Mutation 'R0930:Caprin2'
ID 262380
Institutional Source Beutler Lab
Gene Symbol Caprin2
Ensembl Gene ENSMUSG00000030309
Gene Name caprin family member 2
Synonyms RNG140, C1qdc1, Eeg1
Accession Numbers
Essential gene? Non essential (E-score: 0.000) question?
Stock # R0930 (G1)
Quality Score 225
Status Not validated
Chromosome 6
Chromosomal Location 148743990-148797735 bp(-) (GRCm39)
Type of Mutation splice site
DNA Base Change (assembly) T to C at 148785009 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change
Ref Sequence ENSEMBL: ENSMUSP00000121685 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000072324] [ENSMUST00000111569] [ENSMUST00000139914]
AlphaFold Q05A80
Predicted Effect probably null
Transcript: ENSMUST00000072324
SMART Domains Protein: ENSMUSP00000072165
Gene: ENSMUSG00000030309

DomainStartEndE-ValueType
coiled coil region 48 125 N/A INTRINSIC
coiled coil region 239 264 N/A INTRINSIC
Pfam:Caprin-1_C 317 618 1.2e-32 PFAM
C1Q 676 812 1.27e-35 SMART
Predicted Effect probably null
Transcript: ENSMUST00000111569
SMART Domains Protein: ENSMUSP00000107195
Gene: ENSMUSG00000030309

DomainStartEndE-ValueType
coiled coil region 48 125 N/A INTRINSIC
coiled coil region 239 264 N/A INTRINSIC
low complexity region 330 344 N/A INTRINSIC
Pfam:Caprin-1_C 536 836 2.9e-106 PFAM
C1Q 895 1031 1.27e-35 SMART
Predicted Effect probably null
Transcript: ENSMUST00000139914
SMART Domains Protein: ENSMUSP00000121685
Gene: ENSMUSG00000030309

DomainStartEndE-ValueType
coiled coil region 48 94 N/A INTRINSIC
Predicted Effect noncoding transcript
Transcript: ENSMUST00000204564
Predicted Effect noncoding transcript
Transcript: ENSMUST00000204942
Coding Region Coverage
  • 1x: 99.4%
  • 3x: 98.8%
  • 10x: 97.5%
  • 20x: 95.5%
Validation Efficiency
MGI Phenotype FUNCTION: This gene encodes a member of the caprin family. The encoded protein may function as an RNA-binding protein that induces the formation of RNA granules and plays an important role in brain function. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Aug 2014]
Allele List at MGI
Other mutations in this stock
Total: 57 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Abcg8 G T 17: 84,990,705 (GRCm39) V16L probably benign Het
Adamts18 A T 8: 114,432,028 (GRCm39) probably null Het
Agpat4 A T 17: 12,417,723 (GRCm39) E88V probably damaging Het
Ahcyl2 A C 6: 29,870,627 (GRCm39) probably null Het
Ankrd2 T A 19: 42,032,292 (GRCm39) probably null Het
Anxa6 A T 11: 54,885,214 (GRCm39) probably null Het
Bpi A G 2: 158,103,346 (GRCm39) I114V possibly damaging Het
Cacna1c A T 6: 118,652,857 (GRCm39) I772N probably damaging Het
Cacna2d1 A G 5: 16,570,860 (GRCm39) N1045D possibly damaging Het
Cars1 T A 7: 143,124,307 (GRCm39) H373L probably damaging Het
Ccdc191 G T 16: 43,751,618 (GRCm39) G316V probably damaging Het
Cd244a T A 1: 171,404,801 (GRCm39) probably null Het
Ces1a C T 8: 93,749,044 (GRCm39) D456N probably benign Het
Cul3 A T 1: 80,267,835 (GRCm39) M102K probably damaging Het
Dact1 A G 12: 71,365,234 (GRCm39) R672G probably damaging Het
Dapk1 T C 13: 60,905,262 (GRCm39) F991L probably benign Het
Dlg5 G A 14: 24,185,645 (GRCm39) P1920L probably damaging Het
Eme2 G A 17: 25,111,892 (GRCm39) S263F probably damaging Het
Exosc4 A G 15: 76,211,734 (GRCm39) I14M probably benign Het
Ezr G A 17: 7,021,398 (GRCm39) R180* probably null Het
Fcgbpl1 A T 7: 27,839,555 (GRCm39) Y456F probably damaging Het
Fyb1 A T 15: 6,668,309 (GRCm39) I501F probably damaging Het
Hdac5 G T 11: 102,095,472 (GRCm39) P383Q probably benign Het
Hmx3 A T 7: 131,144,813 (GRCm39) H41L probably benign Het
Krt36 A G 11: 99,994,225 (GRCm39) F284S probably damaging Het
L1td1 A G 4: 98,625,862 (GRCm39) N686D probably damaging Het
Lsamp G A 16: 41,709,327 (GRCm39) G86S probably benign Het
Myh8 A G 11: 67,196,824 (GRCm39) E1819G possibly damaging Het
Myo7a A T 7: 97,747,463 (GRCm39) I129N probably damaging Het
Nckap1 A T 2: 80,384,593 (GRCm39) C114S probably benign Het
Nphp4 T G 4: 152,622,512 (GRCm39) L599R probably benign Het
Nrcam A G 12: 44,596,667 (GRCm39) I301V probably benign Het
Or6b2b A G 1: 92,419,127 (GRCm39) S117P possibly damaging Het
Os9 C T 10: 126,932,924 (GRCm39) R547Q probably damaging Het
Oxtr A T 6: 112,466,598 (GRCm39) probably null Het
Pgm2 A T 5: 64,269,490 (GRCm39) I526F possibly damaging Het
Plekho2 T C 9: 65,464,105 (GRCm39) D248G possibly damaging Het
Rab43 A T 6: 87,769,752 (GRCm39) Y151* probably null Het
Rbm19 A G 5: 120,264,269 (GRCm39) E343G probably benign Het
Rel A T 11: 23,692,439 (GRCm39) D531E probably benign Het
Rfx4 T A 10: 84,704,291 (GRCm39) V262E probably damaging Het
Ryr3 A G 2: 112,672,178 (GRCm39) L1431P probably damaging Het
Sdk2 A G 11: 113,729,271 (GRCm39) I1102T probably benign Het
Sema3d A C 5: 12,513,183 (GRCm39) D51A possibly damaging Het
Sh2d4a T A 8: 68,787,775 (GRCm39) F294I probably damaging Het
Slc3a1 A G 17: 85,367,171 (GRCm39) T453A probably benign Het
Sod1 A G 16: 90,022,071 (GRCm39) D93G probably benign Het
Sptan1 A G 2: 29,906,040 (GRCm39) N1662S probably damaging Het
Stxbp4 A C 11: 90,512,526 (GRCm39) M1R probably null Het
Tbc1d7 A T 13: 43,318,812 (GRCm39) Y108* probably null Het
Ticam1 A T 17: 56,577,226 (GRCm39) V623D unknown Het
Ticam1 A G 17: 56,578,687 (GRCm39) L136P probably damaging Het
Tjap1 A C 17: 46,569,455 (GRCm39) W512G possibly damaging Het
Unc80 A T 1: 66,549,800 (GRCm39) Q686L possibly damaging Het
Wdr45b A T 11: 121,221,040 (GRCm39) F213I probably damaging Het
Xdh A C 17: 74,230,077 (GRCm39) W285G probably benign Het
Zfp646 C T 7: 127,482,982 (GRCm39) Q1500* probably null Het
Other mutations in Caprin2
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00236:Caprin2 APN 6 148,744,569 (GRCm39) missense probably damaging 1.00
IGL01364:Caprin2 APN 6 148,774,526 (GRCm39) missense probably benign 0.00
IGL02738:Caprin2 APN 6 148,744,360 (GRCm39) missense probably damaging 1.00
IGL02819:Caprin2 APN 6 148,749,756 (GRCm39) missense probably damaging 0.99
IGL03117:Caprin2 APN 6 148,763,964 (GRCm39) missense possibly damaging 0.91
IGL03123:Caprin2 APN 6 148,796,505 (GRCm39) missense probably damaging 1.00
IGL03378:Caprin2 APN 6 148,779,352 (GRCm39) missense probably benign 0.23
R0242:Caprin2 UTSW 6 148,744,452 (GRCm39) missense probably damaging 1.00
R0242:Caprin2 UTSW 6 148,744,452 (GRCm39) missense probably damaging 1.00
R0621:Caprin2 UTSW 6 148,760,176 (GRCm39) missense possibly damaging 0.94
R1540:Caprin2 UTSW 6 148,777,969 (GRCm39) missense probably benign 0.01
R1591:Caprin2 UTSW 6 148,774,606 (GRCm39) missense possibly damaging 0.94
R1763:Caprin2 UTSW 6 148,744,619 (GRCm39) missense probably damaging 1.00
R1885:Caprin2 UTSW 6 148,779,383 (GRCm39) splice site probably null
R2027:Caprin2 UTSW 6 148,779,385 (GRCm39) missense probably damaging 0.98
R2867:Caprin2 UTSW 6 148,747,738 (GRCm39) synonymous silent
R4856:Caprin2 UTSW 6 148,774,509 (GRCm39) missense probably benign 0.19
R5580:Caprin2 UTSW 6 148,760,232 (GRCm39) missense possibly damaging 0.79
R5696:Caprin2 UTSW 6 148,779,316 (GRCm39) missense possibly damaging 0.49
R5765:Caprin2 UTSW 6 148,744,666 (GRCm39) missense probably damaging 1.00
R5778:Caprin2 UTSW 6 148,770,820 (GRCm39) missense probably benign
R5961:Caprin2 UTSW 6 148,765,038 (GRCm39) missense probably damaging 1.00
R6255:Caprin2 UTSW 6 148,779,390 (GRCm39) missense probably benign 0.28
R6440:Caprin2 UTSW 6 148,771,143 (GRCm39) missense probably damaging 1.00
R6997:Caprin2 UTSW 6 148,779,474 (GRCm39) missense probably damaging 1.00
R7034:Caprin2 UTSW 6 148,749,703 (GRCm39) missense possibly damaging 0.64
R7344:Caprin2 UTSW 6 148,774,565 (GRCm39) missense probably benign 0.02
R7632:Caprin2 UTSW 6 148,784,954 (GRCm39) missense probably damaging 1.00
R7808:Caprin2 UTSW 6 148,744,528 (GRCm39) missense probably damaging 1.00
R8075:Caprin2 UTSW 6 148,770,590 (GRCm39) missense probably benign 0.03
R8083:Caprin2 UTSW 6 148,744,346 (GRCm39) nonsense probably null
R8128:Caprin2 UTSW 6 148,784,940 (GRCm39) splice site probably null
R8393:Caprin2 UTSW 6 148,770,650 (GRCm39) missense probably benign 0.01
R8839:Caprin2 UTSW 6 148,774,525 (GRCm39) missense probably benign 0.00
R9041:Caprin2 UTSW 6 148,771,030 (GRCm39) missense probably benign 0.03
R9188:Caprin2 UTSW 6 148,767,422 (GRCm39) missense probably benign
R9234:Caprin2 UTSW 6 148,744,337 (GRCm39) nonsense probably null
R9587:Caprin2 UTSW 6 148,770,500 (GRCm39) missense probably benign
R9605:Caprin2 UTSW 6 148,744,332 (GRCm39) missense probably damaging 1.00
Predicted Primers
Posted On 2015-02-04