Incidental Mutation 'R2367:Vmn1r11'
ID |
246371 |
Institutional Source |
Beutler Lab
|
Gene Symbol |
Vmn1r11
|
Ensembl Gene |
ENSMUSG00000115236 |
Gene Name |
vomeronasal 1 receptor 11 |
Synonyms |
V1rc3 |
MMRRC Submission |
040348-MU
|
Accession Numbers |
|
Essential gene? |
Probably non essential
(E-score: 0.104)
|
Stock # |
R2367 (G1)
|
Quality Score |
225 |
Status
|
Not validated
|
Chromosome |
6 |
Chromosomal Location |
57114338-57115237 bp(+) (GRCm39) |
Type of Mutation |
missense |
DNA Base Change (assembly) |
A to G
at 57114416 bp (GRCm39)
|
Zygosity |
Heterozygous |
Amino Acid Change |
Isoleucine to Valine
at position 27
(I27V)
|
Ref Sequence |
ENSEMBL: ENSMUSP00000154588
(fasta)
|
Gene Model |
predicted gene model for transcript(s):
[ENSMUST00000071304]
[ENSMUST00000176954]
[ENSMUST00000226968]
[ENSMUST00000228235]
|
AlphaFold |
Q3SXA2 |
Predicted Effect |
probably benign
Transcript: ENSMUST00000071304
AA Change: I27V
PolyPhen 2
Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)
|
SMART Domains |
Protein: ENSMUSP00000071272 Gene: ENSMUSG00000115236 AA Change: I27V
Domain | Start | End | E-Value | Type |
Pfam:V1R
|
28 |
293 |
4.5e-56 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000176954
AA Change: I27V
PolyPhen 2
Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)
|
SMART Domains |
Protein: ENSMUSP00000135192 Gene: ENSMUSG00000093635 AA Change: I27V
Domain | Start | End | E-Value | Type |
Pfam:V1R
|
28 |
293 |
9.7e-59 |
PFAM |
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000226968
AA Change: I27V
PolyPhen 2
Score 0.003 (Sensitivity: 0.98; Specificity: 0.44)
|
Predicted Effect |
probably benign
Transcript: ENSMUST00000228235
|
Coding Region Coverage |
- 1x: 99.3%
- 3x: 98.7%
- 10x: 97.3%
- 20x: 95.2%
|
Validation Efficiency |
|
Allele List at MGI |
|
Other mutations in this stock |
Total: 33 list
Gene | Ref | Var | Chr/Loc | Mutation | Predicted Effect | Zygosity |
Adipoq |
T |
C |
16: 22,974,069 (GRCm39) |
V32A |
probably benign |
Het |
Ceacam3 |
T |
C |
7: 16,885,813 (GRCm39) |
|
probably null |
Het |
Cep250 |
G |
A |
2: 155,834,552 (GRCm39) |
R2159K |
probably damaging |
Het |
Cfap46 |
C |
A |
7: 139,233,414 (GRCm39) |
V296F |
probably damaging |
Het |
Ctdspl2 |
T |
C |
2: 121,817,499 (GRCm39) |
V182A |
probably benign |
Het |
Cyp2c69 |
T |
C |
19: 39,866,038 (GRCm39) |
N185S |
probably benign |
Het |
Daxx |
C |
T |
17: 34,130,821 (GRCm39) |
R279W |
probably benign |
Het |
Dnajc28 |
G |
A |
16: 91,413,755 (GRCm39) |
T187M |
probably damaging |
Het |
Fat3 |
G |
A |
9: 15,909,567 (GRCm39) |
S2145F |
probably damaging |
Het |
Galnt13 |
A |
T |
2: 55,002,956 (GRCm39) |
M552L |
probably benign |
Het |
Gstt2 |
C |
T |
10: 75,668,524 (GRCm39) |
G108S |
probably benign |
Het |
Heatr1 |
T |
A |
13: 12,448,605 (GRCm39) |
L422Q |
probably damaging |
Het |
Kntc1 |
C |
T |
5: 123,919,255 (GRCm39) |
L845F |
probably damaging |
Het |
Krtap26-1 |
C |
A |
16: 88,444,213 (GRCm39) |
R136L |
probably benign |
Het |
Mrgprb5 |
C |
T |
7: 47,818,347 (GRCm39) |
W129* |
probably null |
Het |
Ms4a3 |
G |
A |
19: 11,607,108 (GRCm39) |
P186S |
probably benign |
Het |
Myo15a |
T |
A |
11: 60,408,064 (GRCm39) |
M3184K |
probably damaging |
Het |
Olig2 |
G |
A |
16: 91,023,454 (GRCm39) |
R56Q |
possibly damaging |
Het |
Or8u9 |
T |
C |
2: 86,001,981 (GRCm39) |
Y60C |
probably damaging |
Het |
Pgap3 |
C |
T |
11: 98,281,985 (GRCm39) |
|
probably null |
Het |
Phgdh |
C |
G |
3: 98,221,612 (GRCm39) |
G440A |
probably benign |
Het |
Scn1a |
T |
C |
2: 66,158,023 (GRCm39) |
Q450R |
probably damaging |
Het |
Sema4d |
CGGGG |
CGGGGGGG |
13: 51,857,176 (GRCm39) |
|
probably benign |
Het |
Sik1 |
C |
T |
17: 32,065,271 (GRCm39) |
V776I |
possibly damaging |
Het |
Slc25a39 |
T |
A |
11: 102,294,477 (GRCm39) |
T316S |
possibly damaging |
Het |
Slc38a10 |
C |
T |
11: 120,001,087 (GRCm39) |
E578K |
probably benign |
Het |
Slc44a5 |
T |
A |
3: 153,953,446 (GRCm39) |
I276K |
possibly damaging |
Het |
Smarcc2 |
A |
G |
10: 128,318,036 (GRCm39) |
T610A |
possibly damaging |
Het |
Spag9 |
G |
A |
11: 94,007,583 (GRCm39) |
S1090N |
probably damaging |
Het |
Tpr |
T |
C |
1: 150,309,479 (GRCm39) |
V277A |
probably damaging |
Het |
Traf3ip1 |
T |
G |
1: 91,435,242 (GRCm39) |
S314A |
possibly damaging |
Het |
Tril |
T |
A |
6: 53,796,151 (GRCm39) |
D357V |
probably damaging |
Het |
Tube1 |
T |
C |
10: 39,020,915 (GRCm39) |
L267P |
probably damaging |
Het |
|
Other mutations in Vmn1r11 |
Allele | Source | Chr | Coord | Type | Predicted Effect | PPH Score |
IGL02134:Vmn1r11
|
APN |
6 |
57,115,022 (GRCm39) |
missense |
possibly damaging |
0.66 |
IGL02141:Vmn1r11
|
APN |
6 |
57,114,364 (GRCm39) |
nonsense |
probably null |
|
IGL03147:Vmn1r11
|
UTSW |
6 |
57,114,650 (GRCm39) |
missense |
probably damaging |
0.98 |
R0908:Vmn1r11
|
UTSW |
6 |
57,115,049 (GRCm39) |
missense |
probably damaging |
1.00 |
R1185:Vmn1r11
|
UTSW |
6 |
57,114,492 (GRCm39) |
missense |
possibly damaging |
0.89 |
R1185:Vmn1r11
|
UTSW |
6 |
57,114,492 (GRCm39) |
missense |
possibly damaging |
0.89 |
R1185:Vmn1r11
|
UTSW |
6 |
57,114,492 (GRCm39) |
missense |
possibly damaging |
0.89 |
R1347:Vmn1r11
|
UTSW |
6 |
57,114,963 (GRCm39) |
missense |
probably benign |
0.23 |
R1347:Vmn1r11
|
UTSW |
6 |
57,114,963 (GRCm39) |
missense |
probably benign |
0.23 |
R1348:Vmn1r11
|
UTSW |
6 |
57,114,963 (GRCm39) |
missense |
probably benign |
0.23 |
R1349:Vmn1r11
|
UTSW |
6 |
57,114,963 (GRCm39) |
missense |
probably benign |
0.23 |
R1373:Vmn1r11
|
UTSW |
6 |
57,114,963 (GRCm39) |
missense |
probably benign |
0.23 |
R1497:Vmn1r11
|
UTSW |
6 |
57,114,394 (GRCm39) |
missense |
probably damaging |
1.00 |
R2147:Vmn1r11
|
UTSW |
6 |
57,114,583 (GRCm39) |
missense |
probably benign |
0.29 |
R3087:Vmn1r11
|
UTSW |
6 |
57,114,691 (GRCm39) |
missense |
possibly damaging |
0.94 |
R4445:Vmn1r11
|
UTSW |
6 |
57,114,515 (GRCm39) |
missense |
probably benign |
0.31 |
R4667:Vmn1r11
|
UTSW |
6 |
57,114,483 (GRCm39) |
missense |
probably damaging |
1.00 |
R4769:Vmn1r11
|
UTSW |
6 |
57,114,597 (GRCm39) |
missense |
probably damaging |
1.00 |
R5513:Vmn1r11
|
UTSW |
6 |
57,114,617 (GRCm39) |
missense |
probably damaging |
0.97 |
R5841:Vmn1r11
|
UTSW |
6 |
57,114,787 (GRCm39) |
missense |
probably damaging |
1.00 |
R6089:Vmn1r11
|
UTSW |
6 |
57,114,645 (GRCm39) |
missense |
possibly damaging |
0.95 |
R7155:Vmn1r11
|
UTSW |
6 |
57,115,147 (GRCm39) |
missense |
probably benign |
0.07 |
R7359:Vmn1r11
|
UTSW |
6 |
57,115,184 (GRCm39) |
missense |
probably damaging |
1.00 |
R8846:Vmn1r11
|
UTSW |
6 |
57,114,807 (GRCm39) |
missense |
probably benign |
0.19 |
R9222:Vmn1r11
|
UTSW |
6 |
57,114,992 (GRCm39) |
missense |
possibly damaging |
0.94 |
R9300:Vmn1r11
|
UTSW |
6 |
57,114,872 (GRCm39) |
missense |
probably benign |
0.00 |
R9517:Vmn1r11
|
UTSW |
6 |
57,114,555 (GRCm39) |
missense |
possibly damaging |
0.88 |
|
Predicted Primers |
PCR Primer
(F):5'- CATACTGTTCAGTGAATCACAAGAC -3'
(R):5'- TGACAGCCTGGAACACACTC -3'
Sequencing Primer
(F):5'- GTGAATCACAAGACTGATGTGTACTC -3'
(R):5'- GCCTGGAACACACTCAGGAG -3'
|
Posted On |
2014-10-30 |