Incidental Mutation 'R2318:Slc10a4-ps'
ID 245550
Institutional Source Beutler Lab
Gene Symbol Slc10a4-ps
Ensembl Gene ENSMUSG00000060204
Gene Name solute carrier family 10 (sodium/bile acid cotransporter family), pseudogene
Synonyms Slc10a4l, Gm5868
Accession Numbers
Essential gene? Possibly non essential (E-score: 0.458) question?
Stock # R2318 (G1)
Quality Score 225
Status Not validated
Chromosome 5
Chromosomal Location 72738981-72744893 bp(-) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) T to C at 72743638 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Threonine to Alanine at position 27 (T27A)
Ref Sequence ENSEMBL: ENSMUSP00000031124 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000031124]
AlphaFold Q8BJG1
Predicted Effect probably benign
Transcript: ENSMUST00000031124
AA Change: T27A

PolyPhen 2 Score 0.001 (Sensitivity: 0.99; Specificity: 0.15)
SMART Domains Protein: ENSMUSP00000031124
Gene: ENSMUSG00000060204
AA Change: T27A

DomainStartEndE-ValueType
transmembrane domain 20 42 N/A INTRINSIC
transmembrane domain 54 76 N/A INTRINSIC
transmembrane domain 91 113 N/A INTRINSIC
Coding Region Coverage
  • 1x: 99.2%
  • 3x: 98.6%
  • 10x: 97.3%
  • 20x: 95.0%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 24 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Arhgef10 G A 8: 14,978,855 (GRCm39) A41T probably damaging Het
Car15 T C 16: 17,654,463 (GRCm39) M158V probably benign Het
Cinp C A 12: 110,840,443 (GRCm39) W113L probably damaging Het
Col4a3 T A 1: 82,626,290 (GRCm39) probably null Het
Csnk2b T C 17: 35,337,037 (GRCm39) Y101C possibly damaging Het
Ddb1 C T 19: 10,603,992 (GRCm39) R900C probably damaging Het
Eif4g2 A G 7: 110,673,065 (GRCm39) F876L possibly damaging Het
F11 A G 8: 45,701,675 (GRCm39) S353P probably damaging Het
H4c4 A G 13: 23,765,739 (GRCm39) Y52C probably damaging Het
Mast1 T C 8: 85,647,754 (GRCm39) D540G probably damaging Het
Mis18bp1 C T 12: 65,187,617 (GRCm39) V829M possibly damaging Het
Mtus2 C T 5: 148,043,892 (GRCm39) R827* probably null Het
Nlrp9a G A 7: 26,273,277 (GRCm39) V860M probably damaging Het
Plod3 G C 5: 137,017,000 (GRCm39) A50P probably benign Het
Prr14l T C 5: 32,987,422 (GRCm39) E691G probably benign Het
Rad1 A G 15: 10,490,495 (GRCm39) N154S probably benign Het
Sanbr A G 11: 23,538,701 (GRCm39) Y66H probably damaging Het
Smc2 T C 4: 52,446,030 (GRCm39) S133P probably damaging Het
Sstr1 T A 12: 58,259,562 (GRCm39) S62T possibly damaging Het
Thsd7a T C 6: 12,405,146 (GRCm39) Y766C probably damaging Het
Timm44 A G 8: 4,318,307 (GRCm39) V129A probably benign Het
Tinag T C 9: 76,952,693 (GRCm39) Y97C probably damaging Het
Tns2 C T 15: 102,017,369 (GRCm39) R281C probably damaging Het
Ubap2 A G 4: 41,251,542 (GRCm39) V30A probably damaging Het
Other mutations in Slc10a4-ps
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL01145:Slc10a4-ps APN 5 72,743,547 (GRCm39) critical splice donor site probably null
R4096:Slc10a4-ps UTSW 5 72,743,709 (GRCm39) missense probably damaging 1.00
R7002:Slc10a4-ps UTSW 5 72,743,763 (GRCm39) critical splice acceptor site probably null
Z1177:Slc10a4-ps UTSW 5 72,743,689 (GRCm39) missense probably benign 0.01
Predicted Primers PCR Primer
(F):5'- CTAAGTGTGTCCCTGAAAGGCC -3'
(R):5'- CGGGGCTTTGTAACAGGTAAG -3'

Sequencing Primer
(F):5'- GTGTCCCTGAAAGGCCTTTGTATC -3'
(R):5'- AAAGACATGGCTGACTGGCTC -3'
Posted On 2014-10-30