Mutagenetix > Incidental Mutation

Incidental Mutation 'R2102:Cdk19'

230592

Institutional Source

Beutler Lab

Gene Symbol

Cdk19

Ensembl Gene

ENSMUSG00000038481

Gene Name

cyclin dependent kinase 19

Synonyms

Cdc2l6, 2700084L06Rik

MMRRC Submission

040106-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R2102 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

40225283-40359814 bp(+) (GRCm39)

Type of Mutation

utr 3 prime

DNA Base Change (assembly)

A to T at 40355726 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Ref Sequence

ENSEMBL: ENSMUSP00000150085 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000044672] [ENSMUST00000095743] [ENSMUST00000214659] [ENSMUST00000215000]

AlphaFold

Q8BWD8

Predicted Effect

unknown
Transcript: ENSMUST00000044672
AA Change: Q478L

SMART Domains

Protein: ENSMUSP00000040936
Gene: ENSMUSG00000038481
AA Change: Q478L

Domain	Start	End	E-Value	Type
S_TKc	21	335	9.96e-83	SMART
low complexity region	371	405	N/A	INTRINSIC
low complexity region	407	422	N/A	INTRINSIC
low complexity region	467	499	N/A	INTRINSIC

Predicted Effect

unknown
Transcript: ENSMUST00000095743
AA Change: Q434L

SMART Domains

Protein: ENSMUSP00000093414
Gene: ENSMUSG00000038481
AA Change: Q434L

Domain	Start	End	E-Value	Type
Pfam:Pkinase_Tyr	22	172	7.2e-17	PFAM
Pfam:Pkinase	23	166	2.5e-29	PFAM
Pfam:Pkinase	164	291	1.2e-11	PFAM
low complexity region	327	361	N/A	INTRINSIC
low complexity region	363	378	N/A	INTRINSIC
low complexity region	423	455	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000214659

Predicted Effect

probably benign
Transcript: ENSMUST00000215000

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000216736

Coding Region Coverage

1x: 99.2%
3x: 98.6%
10x: 97.3%
20x: 95.1%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a protein that is one of the components of the Mediator co-activator complex. The Mediator complex is a multi-protein complex required for transcriptional activation by DNA binding transcription factors of genes transcribed by RNA polymerase II. The protein encoded by this gene is similar to cyclin-dependent kinase 8 which can also be a component of the Mediator complex. Alternative splicing results in multiple transcript variants encoding distinct isoforms. [provided by RefSeq, Jul 2014]

Allele List at MGI

Other mutations in this stock

Total: 85 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
1110002E22Rik	T	C	3: 137,770,934 (GRCm39)	L41P	probably damaging	Het
Abca8a	G	T	11: 109,958,878 (GRCm39)	P749T	probably damaging	Het
Acad8	A	T	9: 26,896,861 (GRCm39)	Y199*	probably null	Het
Acot12	A	T	13: 91,908,096 (GRCm39)	I93L	probably benign	Het
Acsbg3	T	A	17: 57,191,949 (GRCm39)	Y542*	probably null	Het
Actn1	C	A	12: 80,230,291 (GRCm39)	R321L	probably benign	Het
Ap3s1	A	G	18: 46,887,469 (GRCm39)	E34G	possibly damaging	Het
Armh4	A	G	14: 50,011,459 (GRCm39)	Y83H	probably damaging	Het
Atp5f1a	T	C	18: 77,870,017 (GRCm39)	S533P	probably damaging	Het
Bcorl1	T	C	X: 47,458,081 (GRCm39)	V538A	probably benign	Het
Cdhr4	A	G	9: 107,875,206 (GRCm39)	T689A	probably damaging	Het
Cobll1	G	T	2: 64,928,554 (GRCm39)	P923Q	probably damaging	Het
Cpt1a	T	C	19: 3,421,585 (GRCm39)	S456P	probably benign	Het
Cst11	T	C	2: 148,613,160 (GRCm39)	Y55C	probably damaging	Het
Ctif	T	G	18: 75,654,452 (GRCm39)	D358A	probably benign	Het
Cyp2d34	T	G	15: 82,500,974 (GRCm39)	E386A	probably benign	Het
Dcxr	A	G	11: 120,617,133 (GRCm39)	F104L	probably benign	Het
Dmbt1	G	T	7: 130,703,762 (GRCm39)	W1107C	probably damaging	Het
Dsg1a	A	T	18: 20,466,830 (GRCm39)	I567F	probably damaging	Het
Ednrb	T	A	14: 104,058,350 (GRCm39)	R318*	probably null	Het
Exd2	T	C	12: 80,527,377 (GRCm39)	I36T	possibly damaging	Het
Fam83b	A	T	9: 76,399,987 (GRCm39)	I372N	probably damaging	Het
Fbh1	A	G	2: 11,763,100 (GRCm39)	V518A	probably benign	Het
Fkbp5	T	C	17: 28,625,162 (GRCm39)	E308G	possibly damaging	Het
Foxl2	A	C	9: 98,838,282 (GRCm39)	Y190S	probably damaging	Het
Gab3	TTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC	TTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC	X: 74,043,585 (GRCm39)		probably benign	Het
Galnt17	C	T	5: 131,114,831 (GRCm39)	R223Q	probably damaging	Het
Gm14496	G	A	2: 181,633,127 (GRCm39)	D37N	possibly damaging	Het
Gpr82	T	C	X: 13,532,274 (GRCm39)	V274A	probably benign	Het
Hsp90aa1	T	C	12: 110,660,566 (GRCm39)	N292S	probably damaging	Het
Ints1	C	T	5: 139,741,754 (GRCm39)	V1826M	possibly damaging	Het
Itgb4	A	G	11: 115,896,561 (GRCm39)	D1440G	probably benign	Het
Kdm3b	A	G	18: 34,963,200 (GRCm39)	D1552G	probably damaging	Het
Kel	G	A	6: 41,663,418 (GRCm39)	T702I	possibly damaging	Het
Klf3	T	C	5: 64,979,266 (GRCm39)	V36A	probably damaging	Het
Klhl23	A	T	2: 69,659,228 (GRCm39)	I418F	probably damaging	Het
Kndc1	A	T	7: 139,510,674 (GRCm39)	I1329L	probably benign	Het
Krtap2-4	T	C	11: 99,505,606 (GRCm39)		probably benign	Het
Krtap9-5	T	A	11: 99,840,270 (GRCm39)	C324S	unknown	Het
Lepr	T	C	4: 101,630,178 (GRCm39)	V631A	possibly damaging	Het
Lifr	T	C	15: 7,216,404 (GRCm39)	I793T	probably damaging	Het
Mcoln1	G	A	8: 3,561,731 (GRCm39)	R427H	probably damaging	Het
Mgat5b	G	A	11: 116,810,255 (GRCm39)		probably benign	Het
Mmp12	G	A	9: 7,349,802 (GRCm39)	V78M	probably damaging	Het
Mrgprb8	T	A	7: 48,038,634 (GRCm39)	L102M	possibly damaging	Het
Mybphl	A	G	3: 108,282,949 (GRCm39)	T246A	possibly damaging	Het
Myo7b	A	T	18: 32,133,031 (GRCm39)	F439L	probably damaging	Het
Myom1	A	T	17: 71,408,024 (GRCm39)	D1088V	probably damaging	Het
Nrcam	T	C	12: 44,623,471 (GRCm39)	F1004S	probably benign	Het
Palld	A	T	8: 61,986,467 (GRCm39)	M788K	possibly damaging	Het
Pappa	T	A	4: 65,234,465 (GRCm39)	Y1423*	probably null	Het
Pfkm	A	G	15: 98,027,171 (GRCm39)	K615E	probably damaging	Het
Pkd1l2	G	T	8: 117,808,208 (GRCm39)	D105E	probably damaging	Het
Plekha5	G	A	6: 140,518,603 (GRCm39)	A297T	probably damaging	Het
Plxnb1	T	A	9: 108,944,810 (GRCm39)	M2051K	probably damaging	Het
Ppp6r2	A	G	15: 89,162,949 (GRCm39)	T524A	probably damaging	Het
Psg26	T	C	7: 18,209,067 (GRCm39)	E447G	probably damaging	Het
Rab3gap2	A	G	1: 185,014,586 (GRCm39)	D1225G	probably benign	Het
Rep15	A	G	6: 146,934,403 (GRCm39)		probably null	Het
Rgl2	G	A	17: 34,152,314 (GRCm39)		probably null	Het
Rpl7a	T	G	2: 26,801,473 (GRCm39)	V55G	possibly damaging	Het
Rtp1	A	T	16: 23,250,108 (GRCm39)	I158F	probably benign	Het
Scaper	A	T	9: 55,819,334 (GRCm39)	V127E	probably benign	Het
Sele	T	A	1: 163,881,395 (GRCm39)	C501S	probably damaging	Het
Serpina11	C	T	12: 103,949,104 (GRCm39)	V358I	probably benign	Het
Slc16a4	A	G	3: 107,211,819 (GRCm39)		probably null	Het
Slco6c1	T	C	1: 97,055,656 (GRCm39)	I82V	probably benign	Het
Smarca5	T	C	8: 81,431,304 (GRCm39)	E971G	probably damaging	Het
Smr2	T	C	5: 88,256,595 (GRCm39)	L91P	probably damaging	Het
Spata31f3	T	A	4: 42,868,558 (GRCm39)	H355L	probably benign	Het
Spopfm2	A	T	3: 94,082,973 (GRCm39)	C279*	probably null	Het
Srrm2	A	G	17: 24,036,722 (GRCm39)		probably benign	Het
Sting1	A	T	18: 35,868,290 (GRCm39)	M270K	probably damaging	Het
Syne1	A	G	10: 5,006,514 (GRCm39)	W7980R	probably damaging	Het
Syne2	A	G	12: 76,074,853 (GRCm39)	T4598A	probably benign	Het
Tmem171	A	T	13: 98,828,851 (GRCm39)	F100I	probably damaging	Het
Tnfrsf10b	A	G	14: 70,013,546 (GRCm39)	T159A	probably benign	Het
Tph1	A	T	7: 46,309,834 (GRCm39)		probably null	Het
Trim46	A	T	3: 89,142,504 (GRCm39)	I638N	probably damaging	Het
Ubl7	G	A	9: 57,827,825 (GRCm39)	D171N	probably damaging	Het
Utp20	A	G	10: 88,608,779 (GRCm39)	Y1514H	probably damaging	Het
Vmn2r81	A	G	10: 79,129,334 (GRCm39)	I742V	probably damaging	Het
Xrcc2	A	T	5: 25,897,505 (GRCm39)	V148E	probably damaging	Het
Zbed3	A	G	13: 95,472,615 (GRCm39)	D13G	possibly damaging	Het
Zdhhc25	T	A	15: 88,484,962 (GRCm39)	L99Q	probably benign	Het

Other mutations in Cdk19

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00164:Cdk19	APN	10	40,312,161 (GRCm39)	missense	probably benign	0.14
IGL00482:Cdk19	APN	10	40,345,644 (GRCm39)	missense	possibly damaging	0.61
IGL03380:Cdk19	APN	10	40,352,908 (GRCm39)	missense	probably benign	0.42
R0217:Cdk19	UTSW	10	40,352,254 (GRCm39)	splice site	probably benign
R1639:Cdk19	UTSW	10	40,352,965 (GRCm39)	critical splice donor site	probably null
R1899:Cdk19	UTSW	10	40,355,776 (GRCm39)	utr 3 prime	probably benign
R3828:Cdk19	UTSW	10	40,351,609 (GRCm39)	missense	probably damaging	0.96
R4124:Cdk19	UTSW	10	40,270,391 (GRCm39)	missense	probably benign	0.09
R4125:Cdk19	UTSW	10	40,270,391 (GRCm39)	missense	probably benign	0.09
R4128:Cdk19	UTSW	10	40,270,391 (GRCm39)	missense	probably benign	0.09
R4474:Cdk19	UTSW	10	40,345,952 (GRCm39)	critical splice donor site	probably null
R4668:Cdk19	UTSW	10	40,342,706 (GRCm39)	missense	probably damaging	0.98
R4750:Cdk19	UTSW	10	40,352,195 (GRCm39)	missense	probably damaging	1.00
R4871:Cdk19	UTSW	10	40,352,232 (GRCm39)	missense	probably benign	0.03
R4993:Cdk19	UTSW	10	40,352,214 (GRCm39)	missense	possibly damaging	0.79
R5078:Cdk19	UTSW	10	40,312,150 (GRCm39)	missense	probably damaging	1.00
R7130:Cdk19	UTSW	10	40,355,761 (GRCm39)	missense	unknown
R7570:Cdk19	UTSW	10	40,353,954 (GRCm39)	missense	possibly damaging	0.80
R8179:Cdk19	UTSW	10	40,270,368 (GRCm39)	missense	possibly damaging	0.89
R9027:Cdk19	UTSW	10	40,355,728 (GRCm39)	missense	unknown
R9438:Cdk19	UTSW	10	40,352,176 (GRCm39)	missense	probably damaging	1.00
R9684:Cdk19	UTSW	10	40,351,594 (GRCm39)	missense	probably damaging	1.00

Predicted Primers

PCR Primer
(F):5'- TAGCCAAAGTCAGTGCCAAC -3'
(R):5'- TCAAGGGTCTGCACTTTGC -3'

Sequencing Primer
(F):5'- GGTCTCACAGGCTACAGTTTCAG -3'
(R):5'- CACTTTGCATGGTGTCAGTC -3'

Posted On

2014-09-18