Mutagenetix > Incidental Mutation

Incidental Mutation 'R1978:Trim38'

222054

Institutional Source

Beutler Lab

Gene Symbol

Trim38

Ensembl Gene

ENSMUSG00000064140

Gene Name

tripartite motif-containing 38

Synonyms

LOC214158

MMRRC Submission

039991-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.050) question?

Stock #

R1978 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

23962483-23975721 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 23975081 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Valine to Alanine at position 340 (V340A)

Ref Sequence

ENSEMBL: ENSMUSP00000153240 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000074067] [ENSMUST00000223911] [ENSMUST00000226039]

AlphaFold

Q5SZ99

Predicted Effect

probably damaging
Transcript: ENSMUST00000074067
AA Change: V340A

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

SMART Domains

Protein: ENSMUSP00000073709
Gene: ENSMUSG00000064140
AA Change: V340A

Domain	Start	End	E-Value	Type
RING	16	61	8.95e-7	SMART
BBOX	90	131	4.34e-5	SMART
coiled coil region	202	249	N/A	INTRINSIC
PRY	293	347	2.31e-9	SMART
SPRY	348	469	6.71e-21	SMART

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000144770

Predicted Effect

probably benign
Transcript: ENSMUST00000223911

Predicted Effect

probably damaging
Transcript: ENSMUST00000226039
AA Change: V340A

PolyPhen 2 Score 0.999 (Sensitivity: 0.14; Specificity: 0.99)

Coding Region Coverage

1x: 99.1%
3x: 98.4%
10x: 96.7%
20x: 93.9%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the tripartite motif (TRIM) family. The encoded protein contains a RING-type zinc finger, B box-type zinc finger and SPRY domain. The function of this protein has not been identified. A pseudogene of this gene is located on the long arm of chromosome 4. [provided by RefSeq, Jul 2012]
PHENOTYPE: Mice homozygous for a knock-out allele exhibit increased poly(I:C) and LPS-induced IFN-beta, TNFalpha and IL6 with increased induced mortality induced by poly(I:C), LPS or S. typhimurium infection, [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 74 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
0610040J01Rik	T	A	5: 64,055,880 (GRCm39)	C205*	probably null	Het
4921539E11Rik	T	A	4: 103,127,961 (GRCm39)	T55S	possibly damaging	Het
Akap12	A	G	10: 4,263,855 (GRCm39)	D88G	probably benign	Het
Ankrd53	C	A	6: 83,740,185 (GRCm39)	F84L	probably damaging	Het
Apol7b	A	C	15: 77,307,539 (GRCm39)	F319V	probably damaging	Het
Bsn	A	G	9: 107,991,748 (GRCm39)	S1335P	probably benign	Het
Cep192	T	C	18: 67,936,228 (GRCm39)		probably null	Het
Cfap57	A	G	4: 118,450,329 (GRCm39)	S598P	probably benign	Het
Commd8	T	C	5: 72,322,842 (GRCm39)	H25R	probably damaging	Het
Crisp4	T	C	1: 18,198,889 (GRCm39)	I143V	probably benign	Het
Cyp4a12b	A	T	4: 115,295,342 (GRCm39)	T483S	probably benign	Het
Dbx2	C	T	15: 95,530,234 (GRCm39)	M244I	probably damaging	Het
Dnah6	T	G	6: 73,098,953 (GRCm39)	H1982P	possibly damaging	Het
Fam220a	C	A	5: 143,548,882 (GRCm39)	P98Q	probably damaging	Het
Ggnbp1	A	G	17: 27,248,517 (GRCm39)	K29E	possibly damaging	Het
Gm14569	A	C	X: 35,695,781 (GRCm39)	M976R	probably benign	Het
Hck	G	T	2: 152,971,776 (GRCm39)	W112C	probably damaging	Het
Heatr5a	A	T	12: 51,986,441 (GRCm39)	S591T	possibly damaging	Het
Hhat	A	G	1: 192,399,415 (GRCm39)	S242P	probably benign	Het
Hnrnpll	A	G	17: 80,351,947 (GRCm39)	S333P	probably benign	Het
Hoxc6	T	C	15: 102,918,439 (GRCm39)		probably null	Het
Inpp5j	G	A	11: 3,452,150 (GRCm39)	P367S	probably damaging	Het
Lamc2	A	G	1: 153,009,343 (GRCm39)		probably null	Het
Loxhd1	T	A	18: 77,409,338 (GRCm39)	I194N	possibly damaging	Het
Miga1	CCAGGGCAG	CCAG	3: 152,040,941 (GRCm39)		probably null	Het
Mkln1	C	T	6: 31,467,465 (GRCm39)	Q60*	probably null	Het
Muc21	T	A	17: 35,933,857 (GRCm39)		probably benign	Het
Mybph	C	A	1: 134,124,734 (GRCm39)	H185N	probably benign	Het
Myo1g	T	C	11: 6,470,829 (GRCm39)	D9G	possibly damaging	Het
Myo6	A	T	9: 80,136,207 (GRCm39)	D110V	probably damaging	Het
Ncoa7	A	G	10: 30,567,295 (GRCm39)	V412A	probably benign	Het
Neb	T	C	2: 52,177,357 (GRCm39)	K1328R	probably damaging	Het
Olfm5	T	A	7: 103,813,948 (GRCm39)	Q22L	unknown	Het
Or10ak7	A	T	4: 118,791,381 (GRCm39)	Y221*	probably null	Het
Or4d11	T	C	19: 12,013,705 (GRCm39)	T134A	probably benign	Het
Or5j1	C	T	2: 86,879,179 (GRCm39)	V134M	possibly damaging	Het
Or6b3	C	A	1: 92,439,499 (GRCm39)	G84C	probably damaging	Het
Or6p1	T	A	1: 174,258,657 (GRCm39)	I221N	probably damaging	Het
Or7a39	A	G	10: 78,715,114 (GRCm39)	Y36C	probably damaging	Het
P3h1	A	T	4: 119,105,173 (GRCm39)	Q717L	probably null	Het
Pclo	T	C	5: 14,763,809 (GRCm39)	I4094T	unknown	Het
Pfdn6	G	A	17: 34,158,051 (GRCm39)	R73W	probably benign	Het
Phyhipl	A	C	10: 70,395,591 (GRCm39)	M205R	possibly damaging	Het
Pitpnm1	C	T	19: 4,157,973 (GRCm39)		probably null	Het
Plcg1	A	G	2: 160,594,498 (GRCm39)		probably null	Het
Pnldc1	A	G	17: 13,125,392 (GRCm39)	S81P	possibly damaging	Het
Pno1	T	C	11: 17,154,519 (GRCm39)	I221V	possibly damaging	Het
Porcn	A	G	X: 8,070,540 (GRCm39)	V75A	probably damaging	Het
Prkcg	T	A	7: 3,353,862 (GRCm39)	C69S	probably damaging	Het
Rbbp6	G	T	7: 122,598,711 (GRCm39)		probably benign	Het
Resf1	T	A	6: 149,227,930 (GRCm39)	N325K	probably benign	Het
Rif1	GCCACCA	GCCA	2: 52,000,336 (GRCm39)		probably benign	Het
Scly	A	G	1: 91,247,891 (GRCm39)	D413G	probably damaging	Het
Scn11a	G	A	9: 119,609,861 (GRCm39)	R996*	probably null	Het
Skic3	T	C	13: 76,282,934 (GRCm39)	V752A	probably benign	Het
Slc6a13	A	T	6: 121,309,332 (GRCm39)	D281V	probably damaging	Het
Slfn5	T	C	11: 82,847,442 (GRCm39)	V109A	probably benign	Het
Smyd1	A	T	6: 71,289,703 (GRCm39)		probably null	Het
Snx29	T	A	16: 11,185,588 (GRCm39)	M57K	probably benign	Het
Stag1	T	G	9: 100,770,139 (GRCm39)	I603S	probably benign	Het
Svep1	C	A	4: 58,097,292 (GRCm39)	C1417F	possibly damaging	Het
Tbc1d23	T	C	16: 57,009,714 (GRCm39)	I392V	probably benign	Het
Tchh	T	C	3: 93,354,106 (GRCm39)	L1182P	unknown	Het
Tle3	T	A	9: 61,301,915 (GRCm39)	V108E	probably damaging	Het
Tmem144	T	C	3: 79,732,707 (GRCm39)		probably null	Het
Tpr	T	G	1: 150,295,658 (GRCm39)	L894V	possibly damaging	Het
Trappc9	A	T	15: 72,871,874 (GRCm39)	V472E	probably damaging	Het
Ttn	A	T	2: 76,641,587 (GRCm39)	L5176Q	possibly damaging	Het
Vmn1r12	T	A	6: 57,136,494 (GRCm39)	I197N	possibly damaging	Het
Vmn1r26	T	C	6: 57,986,111 (GRCm39)	Y26C	possibly damaging	Het
Vwa3a	A	G	7: 120,358,177 (GRCm39)	I83V	probably null	Het
Xirp1	C	T	9: 119,847,657 (GRCm39)	E409K	probably benign	Het
Zc3h14	T	G	12: 98,730,181 (GRCm39)	I46R	probably damaging	Het
Zfp976	A	G	7: 42,263,265 (GRCm39)	C191R	probably damaging	Het

Other mutations in Trim38

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00915:Trim38	APN	13	23,975,015 (GRCm39)	missense	possibly damaging	0.91
IGL01592:Trim38	APN	13	23,975,410 (GRCm39)	missense	possibly damaging	0.85
IGL02339:Trim38	APN	13	23,972,213 (GRCm39)	missense	probably damaging	1.00
IGL03062:Trim38	APN	13	23,966,946 (GRCm39)	missense	probably damaging	1.00
IGL03278:Trim38	APN	13	23,974,979 (GRCm39)	missense	possibly damaging	0.65
R0630:Trim38	UTSW	13	23,975,115 (GRCm39)	nonsense	probably null
R1263:Trim38	UTSW	13	23,975,117 (GRCm39)	missense	probably damaging	1.00
R1560:Trim38	UTSW	13	23,966,685 (GRCm39)	missense	probably benign	0.02
R4407:Trim38	UTSW	13	23,975,474 (GRCm39)	missense	probably benign	0.04
R4462:Trim38	UTSW	13	23,975,435 (GRCm39)	missense	probably null	1.00
R4649:Trim38	UTSW	13	23,966,952 (GRCm39)	missense	probably damaging	1.00
R4651:Trim38	UTSW	13	23,966,952 (GRCm39)	missense	probably damaging	1.00
R4653:Trim38	UTSW	13	23,966,952 (GRCm39)	missense	probably damaging	1.00
R4816:Trim38	UTSW	13	23,972,264 (GRCm39)	missense	probably damaging	1.00
R4970:Trim38	UTSW	13	23,975,312 (GRCm39)	missense	probably damaging	0.98
R5946:Trim38	UTSW	13	23,966,717 (GRCm39)	missense	probably benign	0.04
R6538:Trim38	UTSW	13	23,969,932 (GRCm39)	missense	probably damaging	0.97
R6974:Trim38	UTSW	13	23,973,502 (GRCm39)	missense	probably benign	0.05
R7227:Trim38	UTSW	13	23,969,946 (GRCm39)	missense	possibly damaging	0.88
R7319:Trim38	UTSW	13	23,975,384 (GRCm39)	missense	probably damaging	1.00
R7425:Trim38	UTSW	13	23,972,365 (GRCm39)	missense	probably benign	0.02
R8243:Trim38	UTSW	13	23,975,378 (GRCm39)	missense	probably damaging	1.00
R8965:Trim38	UTSW	13	23,975,006 (GRCm39)	missense	possibly damaging	0.65
R9354:Trim38	UTSW	13	23,969,875 (GRCm39)	missense	probably benign	0.09
R9573:Trim38	UTSW	13	23,966,688 (GRCm39)	missense	probably benign	0.01

Predicted Primers

PCR Primer
(F):5'- GTTTGCACAGACTTACATGCTTAAG -3'
(R):5'- TTCAAGGCCGTCCTCTTCAG -3'

Sequencing Primer
(F):5'- ACGTTTGTAACTCTTAAAAGACTGG -3'
(R):5'- GACATCTTGATGGTCCAGAATCCAG -3'

Posted On

2014-08-25