Mutagenetix > Incidental Mutation

Incidental Mutation 'R1809:Tut4'

203669

Institutional Source

Beutler Lab

Gene Symbol

Tut4

Ensembl Gene

ENSMUSG00000034610

Gene Name

terminal uridylyl transferase 4

Synonyms

9230115F04Rik, Tent3a, 6030404K05Rik, Zcchc11

MMRRC Submission

039838-MU

Accession Numbers

Essential gene?

Non essential (E-score: 0.000) question?

Stock #

R1809 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

108316623-108416618 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to A at 108406552 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Histidine to Glutamine at position 1373 (H1373Q)

Ref Sequence

ENSEMBL: ENSMUSP00000095538 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000043368] [ENSMUST00000097925]

AlphaFold

B2RX14

Predicted Effect

probably damaging
Transcript: ENSMUST00000043368
AA Change: H1368Q

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000044836
Gene: ENSMUSG00000034610
AA Change: H1368Q

Domain	Start	End	E-Value	Type
low complexity region	260	275	N/A	INTRINSIC
SCOP:d1f5aa2	363	569	2e-23	SMART
Pfam:PAP_assoc	648	701	1.2e-13	PFAM
low complexity region	743	758	N/A	INTRINSIC
low complexity region	815	828	N/A	INTRINSIC
ZnF_C2HC	931	947	7.79e-3	SMART
Pfam:NTP_transf_2	995	1085	4.2e-10	PFAM
Pfam:PAP_assoc	1201	1254	4.7e-19	PFAM
ZnF_C2HC	1311	1327	3.83e-3	SMART
ZnF_C2HC	1359	1375	3.44e-4	SMART
low complexity region	1398	1412	N/A	INTRINSIC
low complexity region	1418	1473	N/A	INTRINSIC
low complexity region	1628	1639	N/A	INTRINSIC

Predicted Effect

probably damaging
Transcript: ENSMUST00000097925
AA Change: H1373Q

PolyPhen 2 Score 1.000 (Sensitivity: 0.00; Specificity: 1.00)

SMART Domains

Protein: ENSMUSP00000095538
Gene: ENSMUSG00000034610
AA Change: H1373Q

Domain	Start	End	E-Value	Type
low complexity region	260	275	N/A	INTRINSIC
SCOP:d1f5aa2	363	569	2e-23	SMART
Pfam:PAP_assoc	648	701	8e-14	PFAM
low complexity region	743	758	N/A	INTRINSIC
low complexity region	815	828	N/A	INTRINSIC
ZnF_C2HC	931	947	7.79e-3	SMART
Pfam:NTP_transf_2	994	1082	6.3e-11	PFAM
Pfam:PAP_assoc	1201	1254	5.2e-19	PFAM
ZnF_C2HC	1311	1327	3.83e-3	SMART
ZnF_C2HC	1364	1380	3.44e-4	SMART
low complexity region	1403	1417	N/A	INTRINSIC
low complexity region	1423	1478	N/A	INTRINSIC
low complexity region	1632	1643	N/A	INTRINSIC

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000127602

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000151349

Meta Mutation Damage Score

0.8378

Coding Region Coverage

1x: 97.5%
3x: 96.8%
10x: 94.9%
20x: 91.2%

Validation Efficiency

96% (107/111)

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] ZCCHC11 is an RNA uridyltransferase (EC 2.7.7.52) that uses UTP to add uridines to the 3-prime end of substrate RNA molecules (Jones et al., 2009 [PubMed 19701194]).[supplied by OMIM, Jan 2011]
PHENOTYPE: Mice homozygous for a gene trap allele exhibit partial postnatal lethality associated with postnatal growth retardation and reduced circulating insulin-like growth factor I levels. [provided by MGI curators]

Allele List at MGI

Other mutations in this stock

Total: 104 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Ablim2	A	G	5: 36,000,614 (GRCm39)		probably benign	Het
Adamts20	C	T	15: 94,238,968 (GRCm39)	S750N	probably damaging	Het
Adh6a	G	A	3: 138,036,722 (GRCm39)	R370H	possibly damaging	Het
Akr1b7	A	G	6: 34,396,046 (GRCm39)	N183D	probably damaging	Het
Aktip	A	T	8: 91,856,348 (GRCm39)	I43N	probably damaging	Het
Ankrd26	A	T	6: 118,502,883 (GRCm39)		probably benign	Het
Ano9	G	A	7: 140,688,717 (GRCm39)	T144I	possibly damaging	Het
Anpep	G	T	7: 79,491,571 (GRCm39)	D143E	probably benign	Het
Aox1	C	A	1: 58,333,484 (GRCm39)	Q234K	probably benign	Het
Ap1g1	C	G	8: 110,559,814 (GRCm39)		probably benign	Het
Arhgef4	G	A	1: 34,849,636 (GRCm39)		probably null	Het
Arsj	A	G	3: 126,231,944 (GRCm39)	Y230C	possibly damaging	Het
Asmt	C	T	X: 169,109,480 (GRCm39)		probably benign	Het
Astl	A	T	2: 127,187,405 (GRCm39)	K72N	probably damaging	Het
Atp2b2	G	A	6: 113,780,704 (GRCm39)		probably benign	Het
Baiap2l1	A	C	5: 144,261,365 (GRCm39)		probably null	Het
C7	A	T	15: 5,063,821 (GRCm39)	N193K	probably damaging	Het
Cacna2d4	G	T	6: 119,247,785 (GRCm39)	R362L	probably damaging	Het
Cct4	T	A	11: 22,947,615 (GRCm39)	D189E	probably benign	Het
Cd300lg	G	A	11: 101,933,938 (GRCm39)	G62S	probably benign	Het
Cdk14	T	A	5: 5,060,901 (GRCm39)	M307L	probably damaging	Het
Cfi	G	A	3: 129,666,768 (GRCm39)		probably null	Het
Clec2g	G	T	6: 128,957,273 (GRCm39)		probably null	Het
Cntnap2	T	C	6: 46,965,609 (GRCm39)	S807P	probably damaging	Het
Col6a3	T	A	1: 90,755,671 (GRCm39)	H206L	probably damaging	Het
Ct55	A	G	X: 52,735,716 (GRCm39)	E99G	probably benign	Het
Cyp2c23	A	T	19: 44,009,997 (GRCm39)		probably benign	Het
Degs1l	T	C	1: 180,887,252 (GRCm39)	I279T	probably damaging	Het
Dlec1	T	C	9: 118,965,767 (GRCm39)	V1058A	probably benign	Het
Dpp9	A	G	17: 56,506,038 (GRCm39)	Y454H	probably damaging	Het
Drosha	G	A	15: 12,890,198 (GRCm39)	G920R	probably null	Het
Duox2	A	G	2: 122,114,378 (GRCm39)	S1142P	possibly damaging	Het
Fam13a	C	T	6: 58,942,045 (GRCm39)		probably null	Het
Filip1l	A	G	16: 57,327,023 (GRCm39)	R18G	probably benign	Het
Foxa1	A	G	12: 57,589,527 (GRCm39)	V231A	probably damaging	Het
Gm4787	A	T	12: 81,425,303 (GRCm39)	M285K	possibly damaging	Het
Gm5084	T	A	13: 60,360,320 (GRCm39)		noncoding transcript	Het
Gm6788	G	A	19: 28,740,586 (GRCm39)		noncoding transcript	Het
Gm9922	G	T	14: 101,966,841 (GRCm39)		probably benign	Het
Gtf3c4	A	T	2: 28,723,988 (GRCm39)	Y440*	probably null	Het
Helq	A	G	5: 100,921,820 (GRCm39)	S795P	probably damaging	Het
Helz	T	A	11: 107,489,997 (GRCm39)	S151T	possibly damaging	Het
Irgm1	T	C	11: 48,757,440 (GRCm39)	T124A	probably benign	Het
Itgam	C	T	7: 127,670,109 (GRCm39)	P134S	possibly damaging	Het
Kdm6a	T	C	X: 18,102,923 (GRCm39)	Y217H	probably benign	Het
Kif6	T	C	17: 50,208,812 (GRCm39)	L744P	probably benign	Het
Kmt2c	C	T	5: 25,489,190 (GRCm39)	R1203H	probably damaging	Het
Ksr2	A	G	5: 117,693,535 (GRCm39)	T328A	probably damaging	Het
Lig1	T	C	7: 13,034,281 (GRCm39)		probably benign	Het
Lpar3	G	A	3: 145,946,303 (GRCm39)		probably benign	Het
Lrrk2	T	C	15: 91,584,095 (GRCm39)	F285S	possibly damaging	Het
Marchf7	A	G	2: 60,062,637 (GRCm39)	D148G	probably benign	Het
Mcee	T	C	7: 64,050,049 (GRCm39)	L60S	probably damaging	Het
Mob2	A	G	7: 141,570,111 (GRCm39)	I81T	probably damaging	Het
Mphosph8	T	A	14: 56,909,909 (GRCm39)	D87E	probably damaging	Het
Msantd5f9	A	G	4: 73,835,754 (GRCm39)	F237L	probably benign	Het
Myo1g	T	C	11: 6,462,283 (GRCm39)	T560A	probably benign	Het
Nagk	C	T	6: 83,774,169 (GRCm39)	T42I	probably benign	Het
Naip1	G	T	13: 100,562,747 (GRCm39)	T806K	probably benign	Het
Ncor2	A	G	5: 125,195,857 (GRCm39)		probably benign	Het
Ocln	G	T	13: 100,647,967 (GRCm39)	Y401*	probably null	Het
Odad2	T	A	18: 7,211,630 (GRCm39)	Y748F	probably benign	Het
Oma1	T	A	4: 103,182,374 (GRCm39)	N292K	probably damaging	Het
Or8b55	G	A	9: 38,727,443 (GRCm39)	V215I	probably benign	Het
Ovch2	T	A	7: 107,389,412 (GRCm39)		probably null	Het
Pcdhb16	T	C	18: 37,611,441 (GRCm39)	F134L	probably damaging	Het
Pipox	A	T	11: 77,772,360 (GRCm39)	Y337N	probably benign	Het
Polr3b	A	G	10: 84,528,865 (GRCm39)	D763G	probably damaging	Het
Pygo1	T	A	9: 72,852,078 (GRCm39)	N88K	probably damaging	Het
Rab3gap1	T	C	1: 127,862,251 (GRCm39)	M674T	probably damaging	Het
Rbm25	T	C	12: 83,719,501 (GRCm39)		probably benign	Het
Rbm26	C	T	14: 105,354,542 (GRCm39)		probably benign	Het
Rbms2	G	A	10: 127,974,055 (GRCm39)	T187I	possibly damaging	Het
Rnase11	T	A	14: 51,287,184 (GRCm39)	R123S	probably benign	Het
Rngtt	A	G	4: 33,443,614 (GRCm39)	N485D	probably benign	Het
Rp1l1	A	T	14: 64,265,415 (GRCm39)	M334L	probably benign	Het
Rps9	T	A	7: 3,707,726 (GRCm39)	L56Q	probably damaging	Het
Saysd1	C	A	14: 20,133,170 (GRCm39)		probably benign	Het
Sema4d	C	T	13: 51,867,727 (GRCm39)		probably null	Het
Shisa5	A	T	9: 108,869,998 (GRCm39)	D34V	probably damaging	Het
Skil	A	G	3: 31,171,655 (GRCm39)	D547G	probably damaging	Het
Slc2a5	T	A	4: 150,227,514 (GRCm39)	F444L	probably damaging	Het
Slc9b2	T	G	3: 135,022,892 (GRCm39)	C10G	possibly damaging	Het
Sorcs2	G	T	5: 36,386,564 (GRCm39)		probably benign	Het
Stk17b	T	G	1: 53,805,140 (GRCm39)	K140N	possibly damaging	Het
Stradb	T	A	1: 59,033,549 (GRCm39)	L404Q	possibly damaging	Het
Synj2	T	C	17: 6,076,826 (GRCm39)	M432T	possibly damaging	Het
Tanc1	G	T	2: 59,630,441 (GRCm39)	R800L	probably damaging	Het
Tenm4	A	G	7: 96,522,987 (GRCm39)	M1473V	probably benign	Het
Tesc	A	G	5: 118,199,667 (GRCm39)	I190V	probably benign	Het
Tex15	T	C	8: 34,064,262 (GRCm39)	F1231L	probably benign	Het
Thrsp	T	C	7: 97,066,332 (GRCm39)	I127V	probably benign	Het
Tlr6	A	T	5: 65,111,055 (GRCm39)	C617*	probably null	Het
Trank1	A	T	9: 111,221,893 (GRCm39)	I2877F	probably benign	Het
Ucp1	T	C	8: 84,024,496 (GRCm39)	S274P	probably damaging	Het
Ucp2	T	A	7: 100,147,606 (GRCm39)	V195E	probably damaging	Het
Vars2	T	C	17: 35,973,108 (GRCm39)	T394A	probably damaging	Het
Vmn1r1	A	G	1: 181,985,371 (GRCm39)	V98A	possibly damaging	Het
Vmn1r225	A	G	17: 20,722,918 (GRCm39)	I120V	probably benign	Het
Vmn2r102	A	T	17: 19,897,881 (GRCm39)	M299L	probably benign	Het
Vmn2r25	A	G	6: 123,802,337 (GRCm39)	V522A	probably benign	Het
Vmn2r70	T	C	7: 85,215,130 (GRCm39)	I135V	probably benign	Het
Vwf	T	C	6: 125,567,138 (GRCm39)		probably benign	Het
Zfp446	T	C	7: 12,713,048 (GRCm39)	F29L	probably damaging	Het

Other mutations in Tut4

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00504:Tut4	APN	4	108,407,925 (GRCm39)	missense	probably damaging	1.00
IGL00684:Tut4	APN	4	108,336,663 (GRCm39)	missense	possibly damaging	0.80
IGL01598:Tut4	APN	4	108,408,017 (GRCm39)	unclassified	probably benign
IGL01599:Tut4	APN	4	108,370,596 (GRCm39)	missense	possibly damaging	0.85
IGL02088:Tut4	APN	4	108,369,415 (GRCm39)	splice site	probably benign
IGL02451:Tut4	APN	4	108,386,473 (GRCm39)	nonsense	probably null
IGL02667:Tut4	APN	4	108,415,905 (GRCm39)	splice site	probably benign
IGL03080:Tut4	APN	4	108,363,021 (GRCm39)	missense	probably damaging	1.00
IGL03374:Tut4	APN	4	108,415,974 (GRCm39)	missense	probably damaging	1.00
Flatter	UTSW	4	108,399,908 (GRCm39)	critical splice donor site	probably null
Ingratiate	UTSW	4	108,369,392 (GRCm39)	missense	probably damaging	1.00
oedipus	UTSW	4	108,406,552 (GRCm39)	missense	probably damaging	1.00
Please	UTSW	4	108,370,083 (GRCm39)	nonsense	probably null
H8786:Tut4	UTSW	4	108,408,012 (GRCm39)	critical splice donor site	probably null
IGL02799:Tut4	UTSW	4	108,370,725 (GRCm39)	missense	probably benign
R0013:Tut4	UTSW	4	108,388,152 (GRCm39)	splice site	probably benign
R0013:Tut4	UTSW	4	108,388,152 (GRCm39)	splice site	probably benign
R0051:Tut4	UTSW	4	108,384,201 (GRCm39)	missense	probably damaging	1.00
R0051:Tut4	UTSW	4	108,384,201 (GRCm39)	missense	probably damaging	1.00
R0410:Tut4	UTSW	4	108,343,752 (GRCm39)	missense	probably benign	0.27
R0698:Tut4	UTSW	4	108,412,730 (GRCm39)	missense	probably benign	0.22
R0745:Tut4	UTSW	4	108,360,152 (GRCm39)	splice site	probably benign
R1080:Tut4	UTSW	4	108,336,696 (GRCm39)	missense	possibly damaging	0.82
R1774:Tut4	UTSW	4	108,365,152 (GRCm39)	missense	probably damaging	1.00
R1869:Tut4	UTSW	4	108,386,497 (GRCm39)	missense	probably damaging	1.00
R1874:Tut4	UTSW	4	108,407,922 (GRCm39)	missense	probably damaging	1.00
R1958:Tut4	UTSW	4	108,412,903 (GRCm39)	missense	probably damaging	1.00
R1976:Tut4	UTSW	4	108,336,720 (GRCm39)	missense	probably benign	0.01
R2034:Tut4	UTSW	4	108,369,392 (GRCm39)	missense	probably damaging	1.00
R2164:Tut4	UTSW	4	108,360,226 (GRCm39)	missense	possibly damaging	0.73
R2251:Tut4	UTSW	4	108,377,405 (GRCm39)	missense	probably damaging	1.00
R3001:Tut4	UTSW	4	108,370,125 (GRCm39)	missense	probably damaging	1.00
R3002:Tut4	UTSW	4	108,370,125 (GRCm39)	missense	probably damaging	1.00
R3003:Tut4	UTSW	4	108,370,125 (GRCm39)	missense	probably damaging	1.00
R4170:Tut4	UTSW	4	108,405,256 (GRCm39)	missense	probably damaging	1.00
R4667:Tut4	UTSW	4	108,352,356 (GRCm39)	missense	probably damaging	1.00
R4868:Tut4	UTSW	4	108,406,417 (GRCm39)	splice site	probably benign
R4989:Tut4	UTSW	4	108,384,042 (GRCm39)	unclassified	probably benign
R5014:Tut4	UTSW	4	108,384,043 (GRCm39)	unclassified	probably benign
R5118:Tut4	UTSW	4	108,377,489 (GRCm39)	missense	possibly damaging	0.92
R5431:Tut4	UTSW	4	108,348,609 (GRCm39)	missense	probably damaging	1.00
R5645:Tut4	UTSW	4	108,414,570 (GRCm39)	missense	probably damaging	1.00
R5661:Tut4	UTSW	4	108,370,384 (GRCm39)	missense	probably benign	0.05
R5877:Tut4	UTSW	4	108,370,120 (GRCm39)	missense	probably damaging	0.99
R6307:Tut4	UTSW	4	108,412,817 (GRCm39)	missense	probably damaging	1.00
R6326:Tut4	UTSW	4	108,336,177 (GRCm39)	missense	probably benign	0.02
R6407:Tut4	UTSW	4	108,415,979 (GRCm39)	missense	probably damaging	1.00
R6493:Tut4	UTSW	4	108,384,002 (GRCm39)	missense	probably damaging	1.00
R6587:Tut4	UTSW	4	108,336,646 (GRCm39)	missense	probably benign
R7215:Tut4	UTSW	4	108,384,205 (GRCm39)	missense	probably damaging	1.00
R7413:Tut4	UTSW	4	108,406,533 (GRCm39)	missense	possibly damaging	0.69
R7584:Tut4	UTSW	4	108,336,543 (GRCm39)	missense	probably benign	0.00
R7872:Tut4	UTSW	4	108,374,715 (GRCm39)	missense	probably damaging	1.00
R7970:Tut4	UTSW	4	108,343,651 (GRCm39)	missense	probably benign	0.00
R8214:Tut4	UTSW	4	108,369,347 (GRCm39)	missense	probably benign	0.00
R8297:Tut4	UTSW	4	108,336,905 (GRCm39)	missense	possibly damaging	0.86
R8504:Tut4	UTSW	4	108,388,139 (GRCm39)	missense	probably damaging	1.00
R8514:Tut4	UTSW	4	108,414,554 (GRCm39)	missense	possibly damaging	0.65
R8557:Tut4	UTSW	4	108,399,908 (GRCm39)	critical splice donor site	probably null
R8750:Tut4	UTSW	4	108,407,940 (GRCm39)	missense	probably damaging	1.00
R8805:Tut4	UTSW	4	108,406,575 (GRCm39)	missense	possibly damaging	0.83
R8903:Tut4	UTSW	4	108,336,408 (GRCm39)	missense	probably damaging	1.00
R9003:Tut4	UTSW	4	108,400,029 (GRCm39)	missense	probably damaging	0.98
R9218:Tut4	UTSW	4	108,370,083 (GRCm39)	nonsense	probably null
R9412:Tut4	UTSW	4	108,414,561 (GRCm39)	missense
R9546:Tut4	UTSW	4	108,370,429 (GRCm39)	missense	probably benign	0.05
R9547:Tut4	UTSW	4	108,370,429 (GRCm39)	missense	probably benign	0.05
R9721:Tut4	UTSW	4	108,412,778 (GRCm39)	missense	probably benign	0.22

Predicted Primers

PCR Primer
(F):5'- TCATCAATTTGTAAGTTCCTGGCTC -3'
(R):5'- TTGAACTAAATCCCTAGCCCAG -3'

Sequencing Primer
(F):5'- GGCTCCACATTATTGGTATCAGCAG -3'
(R):5'- CTGTAATTCCAGGGAAGCTAATGC -3'

Posted On

2014-06-23