Mutagenetix > Incidental Mutation

Incidental Mutation 'R1791:Garnl3'

201695

Institutional Source

Beutler Lab

Gene Symbol

Garnl3

Ensembl Gene

ENSMUSG00000038860

Gene Name

GTPase activating RANGAP domain-like 3

Synonyms

MMRRC Submission

039821-MU

Accession Numbers

Essential gene?

Probably non essential (E-score: 0.111) question?

Stock #

R1791 (G1)

Quality Score

225

Status

Validated

Chromosome

Chromosomal Location

32876236-33021666 bp(-) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

T to C at 32924139 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Isoleucine to Valine at position 248 (I248V)

Ref Sequence

ENSEMBL: ENSMUSP00000122576 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000049618] [ENSMUST00000102810] [ENSMUST00000137381]

AlphaFold

Q3V0G7

Predicted Effect

probably benign
Transcript: ENSMUST00000049618
AA Change: I207V

PolyPhen 2 Score 0.014 (Sensitivity: 0.96; Specificity: 0.79)

SMART Domains

Protein: ENSMUSP00000057582
Gene: ENSMUSG00000038860
AA Change: I207V

Domain	Start	End	E-Value	Type
Pfam:Rap_GAP	202	383	3.4e-73	PFAM
Pfam:CNH	475	780	3.5e-67	PFAM
low complexity region	793	804	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000102810
AA Change: I203V

PolyPhen 2 Score 0.011 (Sensitivity: 0.96; Specificity: 0.78)

SMART Domains

Protein: ENSMUSP00000099874
Gene: ENSMUSG00000038860
AA Change: I203V

Domain	Start	End	E-Value	Type
Pfam:Rap_GAP	198	385	4.6e-67	PFAM
Pfam:CNH	471	776	1.8e-68	PFAM
low complexity region	789	800	N/A	INTRINSIC

Predicted Effect

probably benign
Transcript: ENSMUST00000137381
AA Change: I248V

PolyPhen 2 Score 0.024 (Sensitivity: 0.95; Specificity: 0.81)

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000139778

Predicted Effect

unknown
Transcript: ENSMUST00000193171
AA Change: I26V

Meta Mutation Damage Score

0.1397

Coding Region Coverage

1x: 97.4%
3x: 96.8%
10x: 95.0%
20x: 91.6%

Validation Efficiency

95% (104/110)

Allele List at MGI

Other mutations in this stock

Total: 104 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
A2m	C	A	6: 121,631,571 (GRCm39)	L623M	probably benign	Het
Adrm1b	T	A	3: 92,335,538 (GRCm39)	D388V	probably damaging	Het
Akap13	T	G	7: 75,260,783 (GRCm39)	C333G	probably benign	Het
Akap6	T	C	12: 53,115,908 (GRCm39)	S1004P	probably damaging	Het
Akap7	T	C	10: 25,115,583 (GRCm39)	T181A	probably benign	Het
Ap3b1	A	G	13: 94,545,305 (GRCm39)	E186G	possibly damaging	Het
Arhgap17	T	C	7: 122,885,925 (GRCm39)	T736A	probably benign	Het
Bltp3a	T	A	17: 28,113,720 (GRCm39)	D1297E	probably damaging	Het
Bmp8a	G	T	4: 123,218,378 (GRCm39)	R214S	possibly damaging	Het
Cacna1f	T	C	X: 7,486,678 (GRCm39)	S890P	probably damaging	Het
Cd96	A	T	16: 45,938,362 (GRCm39)	Y34*	probably null	Het
Cdc42ep4	A	G	11: 113,620,163 (GRCm39)	L76P	probably damaging	Het
Cdh23	A	G	10: 60,227,505 (GRCm39)	V1195A	possibly damaging	Het
Cfap57	G	A	4: 118,428,921 (GRCm39)	T1015M	possibly damaging	Het
Chrm3	C	A	13: 9,927,452 (GRCm39)	G528V	probably damaging	Het
Cimap1c	A	T	9: 56,759,027 (GRCm39)	F43I	possibly damaging	Het
Clip4	T	C	17: 72,108,937 (GRCm39)		probably benign	Het
Col9a1	A	T	1: 24,224,386 (GRCm39)	R189S	unknown	Het
Cul4b	A	T	X: 37,636,728 (GRCm39)	I481N	probably damaging	Het
Cyp26b1	A	G	6: 84,561,441 (GRCm39)	S74P	probably benign	Het
Cyp3a57	A	G	5: 145,307,820 (GRCm39)	N192S	probably benign	Het
Dcbld1	A	G	10: 52,195,572 (GRCm39)	D260G	probably damaging	Het
Dhrs7	T	C	12: 72,699,939 (GRCm39)	N231S	probably benign	Het
Disp3	G	A	4: 148,325,975 (GRCm39)	P1261L	probably damaging	Het
Dnaaf4	T	C	9: 72,867,966 (GRCm39)	Y76H	possibly damaging	Het
Eml5	C	A	12: 98,853,315 (GRCm39)	V95F	probably benign	Het
Emsy	A	G	7: 98,297,087 (GRCm39)	I32T	probably damaging	Het
Esr1	A	G	10: 4,733,913 (GRCm39)	R238G	probably damaging	Het
Exosc1	T	C	19: 41,916,524 (GRCm39)	K84R	probably benign	Het
F830016B08Rik	T	A	18: 60,433,589 (GRCm39)	V224E	probably benign	Het
Fam228a	T	A	12: 4,782,748 (GRCm39)	N115I	probably damaging	Het
Farp1	T	C	14: 121,494,157 (GRCm39)	I546T	probably damaging	Het
Fbxo30	T	A	10: 11,165,531 (GRCm39)	C84*	probably null	Het
Fbxw17	A	G	13: 50,579,810 (GRCm39)		probably benign	Het
Foxo4	G	C	X: 100,302,069 (GRCm39)	R192P	probably benign	Het
Galnt7	G	T	8: 57,995,564 (GRCm39)	T377K	probably benign	Het
Glod4	A	G	11: 76,128,534 (GRCm39)	Y104H	probably damaging	Het
Glrb	T	C	3: 80,767,482 (GRCm39)	Y246C	probably damaging	Het
Gm5292	A	G	5: 44,101,752 (GRCm39)		noncoding transcript	Het
Gm5424	C	A	10: 61,908,086 (GRCm39)		noncoding transcript	Het
Gm7276	C	T	18: 77,273,431 (GRCm39)		probably benign	Het
Golga5	A	G	12: 102,458,390 (GRCm39)	N611S	possibly damaging	Het
Gucy2c	A	C	6: 136,721,025 (GRCm39)	Y391D	probably damaging	Het
H6pd	A	G	4: 150,066,130 (GRCm39)	I760T	probably damaging	Het
Hapln2	T	A	3: 87,931,712 (GRCm39)	I5F	possibly damaging	Het
Hdac11	G	T	6: 91,145,806 (GRCm39)	V169L	probably benign	Het
Hectd2	T	C	19: 36,586,816 (GRCm39)	V557A	possibly damaging	Het
Huwe1	T	A	X: 150,647,749 (GRCm39)	N747K	probably benign	Het
Ints1	A	G	5: 139,760,277 (GRCm39)	S66P	probably benign	Het
Ipo7	A	G	7: 109,626,339 (GRCm39)	D49G	probably damaging	Het
Itgb4	G	A	11: 115,879,346 (GRCm39)	C575Y	probably damaging	Het
Klhl3	A	G	13: 58,181,044 (GRCm39)	V250A	possibly damaging	Het
Klk1b24	A	G	7: 43,839,852 (GRCm39)		probably null	Het
Map3k11	T	A	19: 5,745,600 (GRCm39)	Y333*	probably null	Het
Mbp	A	G	18: 82,572,474 (GRCm39)	T57A	probably benign	Het
Myh9	A	G	15: 77,657,464 (GRCm39)		probably benign	Het
Mypn	C	T	10: 62,961,472 (GRCm39)	R1040Q	probably damaging	Het
Ncdn	A	G	4: 126,645,732 (GRCm39)		probably null	Het
Ndn	C	T	7: 61,998,256 (GRCm39)	P34L	probably benign	Het
Or10ab5	T	A	7: 108,245,571 (GRCm39)	T71S	probably benign	Het
Or11h4	AGGGATTGGG	AGGGATTGGGATTGGG	14: 50,974,144 (GRCm39)		probably benign	Het
Or4k15c	A	G	14: 50,321,499 (GRCm39)	F213S	probably benign	Het
Or51b6b	T	C	7: 103,310,005 (GRCm39)		probably null	Het
Or51f1	G	A	7: 102,505,569 (GRCm39)	Q307*	probably null	Het
Or8d2	T	A	9: 38,759,901 (GRCm39)	S164T	possibly damaging	Het
Pbx3	T	C	2: 34,114,464 (GRCm39)	T82A	possibly damaging	Het
Pi15	T	C	1: 17,672,945 (GRCm39)	F48S	probably benign	Het
Pkhd1	A	G	1: 20,655,376 (GRCm39)		probably benign	Het
Ppard	C	G	17: 28,505,348 (GRCm39)	R12G	unknown	Het
Prrc2c	G	T	1: 162,532,551 (GRCm39)		probably benign	Het
Prune1	A	G	3: 95,175,553 (GRCm39)	Y41H	possibly damaging	Het
Rcsd1	T	C	1: 165,483,541 (GRCm39)	D150G	probably damaging	Het
Rgs12	A	T	5: 35,123,456 (GRCm39)	Q413L	possibly damaging	Het
Rhox2h	A	G	X: 36,850,848 (GRCm39)	Y185H	probably damaging	Het
Rnf17	T	A	14: 56,741,464 (GRCm39)	C1306*	probably null	Het
Ros1	T	A	10: 51,976,183 (GRCm39)	M1499L	probably benign	Het
Rubcnl	T	C	14: 75,284,989 (GRCm39)	S503P	probably damaging	Het
Sap18b	A	T	8: 96,552,342 (GRCm39)	R117S	probably benign	Het
Shank2	A	G	7: 143,964,336 (GRCm39)	E858G	probably damaging	Het
Shtn1	T	C	19: 59,020,632 (GRCm39)	R197G	probably damaging	Het
Slamf8	G	A	1: 172,412,087 (GRCm39)	R163*	probably null	Het
Slc6a3	T	C	13: 73,714,411 (GRCm39)	I392T	possibly damaging	Het
Sp140	C	T	1: 85,547,772 (GRCm39)		probably benign	Het
Sp8	T	C	12: 118,812,751 (GRCm39)	V202A	possibly damaging	Het
Spata13	T	C	14: 60,946,908 (GRCm39)	V652A	probably damaging	Het
Stpg2	A	T	3: 139,023,162 (GRCm39)	T393S	probably benign	Het
Tagap	T	C	17: 8,150,299 (GRCm39)	M228T	probably damaging	Het
Tagap	A	G	17: 8,152,377 (GRCm39)	T521A	probably benign	Het
Tas2r123	T	G	6: 132,824,528 (GRCm39)	S142A	probably damaging	Het
Tat	T	A	8: 110,718,261 (GRCm39)	S49T	probably benign	Het
Tfap4	G	T	16: 4,369,933 (GRCm39)	Q41K	possibly damaging	Het
Thbs2	T	C	17: 14,906,075 (GRCm39)	N275S	probably benign	Het
Tnfsf14	T	A	17: 57,497,867 (GRCm39)	R122W	probably damaging	Het
Tnrc6a	T	C	7: 122,792,140 (GRCm39)	V1886A	possibly damaging	Het
Trim56	G	A	5: 137,143,252 (GRCm39)	A88V	probably damaging	Het
Trio	A	G	15: 27,841,842 (GRCm39)	Y1081H	probably damaging	Het
Tspear	T	A	10: 77,706,253 (GRCm39)	L341H	possibly damaging	Het
Ube2o	G	A	11: 116,432,320 (GRCm39)	T882I	probably benign	Het
Upk3a	A	G	15: 84,904,815 (GRCm39)	T188A	possibly damaging	Het
Vmn1r79	A	C	7: 11,910,358 (GRCm39)	D80A	probably damaging	Het
Wls	C	A	3: 159,617,450 (GRCm39)	T375K	probably benign	Het
Wnt5a	T	C	14: 28,233,835 (GRCm39)	M1T	probably null	Het
Zcchc4	A	G	5: 52,953,932 (GRCm39)	E204G	probably damaging	Het
Zfp513	G	A	5: 31,357,678 (GRCm39)	P232S	possibly damaging	Het

Other mutations in Garnl3

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL01102:Garnl3	APN	2	32,896,828 (GRCm39)	missense	probably damaging	1.00
IGL01601:Garnl3	APN	2	32,887,701 (GRCm39)	nonsense	probably null
IGL01981:Garnl3	APN	2	32,887,741 (GRCm39)	missense	probably damaging	0.98
IGL02209:Garnl3	APN	2	32,975,942 (GRCm39)	missense	probably damaging	0.99
IGL02434:Garnl3	APN	2	32,944,217 (GRCm39)	missense	probably damaging	1.00
IGL02512:Garnl3	APN	2	32,921,150 (GRCm39)	missense	probably damaging	1.00
IGL02947:Garnl3	APN	2	32,936,606 (GRCm39)	missense	probably damaging	1.00
PIT4403001:Garnl3	UTSW	2	32,880,770 (GRCm39)	missense	probably damaging	1.00
R0123:Garnl3	UTSW	2	32,896,816 (GRCm39)	missense	possibly damaging	0.92
R0134:Garnl3	UTSW	2	32,896,816 (GRCm39)	missense	possibly damaging	0.92
R0225:Garnl3	UTSW	2	32,896,816 (GRCm39)	missense	possibly damaging	0.92
R0551:Garnl3	UTSW	2	32,906,750 (GRCm39)	missense	probably damaging	1.00
R0691:Garnl3	UTSW	2	32,975,919 (GRCm39)	missense	probably damaging	1.00
R0693:Garnl3	UTSW	2	32,975,919 (GRCm39)	missense	probably damaging	1.00
R0737:Garnl3	UTSW	2	32,880,654 (GRCm39)	missense	probably damaging	0.98
R1350:Garnl3	UTSW	2	32,942,226 (GRCm39)	missense	probably damaging	1.00
R1691:Garnl3	UTSW	2	32,887,675 (GRCm39)	nonsense	probably null
R1938:Garnl3	UTSW	2	32,895,212 (GRCm39)	missense	probably damaging	0.99
R2100:Garnl3	UTSW	2	32,936,657 (GRCm39)	missense	probably benign	0.35
R2316:Garnl3	UTSW	2	32,895,164 (GRCm39)	missense	probably damaging	1.00
R2353:Garnl3	UTSW	2	32,954,046 (GRCm39)	missense	probably damaging	1.00
R3161:Garnl3	UTSW	2	32,924,723 (GRCm39)	missense	probably damaging	1.00
R3839:Garnl3	UTSW	2	32,879,558 (GRCm39)	missense	probably benign	0.00
R3847:Garnl3	UTSW	2	32,882,240 (GRCm39)	missense	probably benign
R4871:Garnl3	UTSW	2	32,977,100 (GRCm39)	start codon destroyed	probably null	0.77
R5682:Garnl3	UTSW	2	32,944,185 (GRCm39)	missense	probably damaging	1.00
R5811:Garnl3	UTSW	2	32,896,911 (GRCm39)	missense	probably damaging	0.99
R6267:Garnl3	UTSW	2	32,994,892 (GRCm39)	missense	probably benign	0.20
R6502:Garnl3	UTSW	2	32,896,833 (GRCm39)	missense	possibly damaging	0.67
R6532:Garnl3	UTSW	2	32,921,131 (GRCm39)	missense	possibly damaging	0.87
R6639:Garnl3	UTSW	2	32,879,537 (GRCm39)	missense	possibly damaging	0.75
R6763:Garnl3	UTSW	2	32,944,208 (GRCm39)	missense	probably damaging	1.00
R6866:Garnl3	UTSW	2	32,892,785 (GRCm39)	splice site	probably null
R6913:Garnl3	UTSW	2	32,876,841 (GRCm39)	missense	possibly damaging	0.91
R7002:Garnl3	UTSW	2	32,944,205 (GRCm39)	missense	possibly damaging	0.65
R7168:Garnl3	UTSW	2	32,885,090 (GRCm39)	missense	probably damaging	1.00
R7341:Garnl3	UTSW	2	32,924,141 (GRCm39)	missense	probably damaging	1.00
R7746:Garnl3	UTSW	2	32,882,269 (GRCm39)	missense	probably damaging	1.00
R7919:Garnl3	UTSW	2	32,936,611 (GRCm39)	missense	probably benign	0.38
R8079:Garnl3	UTSW	2	32,908,511 (GRCm39)	critical splice donor site	probably null
R8087:Garnl3	UTSW	2	32,935,548 (GRCm39)	missense	probably benign	0.01
R8123:Garnl3	UTSW	2	32,994,950 (GRCm39)	missense	probably damaging	0.97
R8170:Garnl3	UTSW	2	32,905,235 (GRCm39)	missense	possibly damaging	0.88
R8347:Garnl3	UTSW	2	32,975,903 (GRCm39)	missense	probably damaging	1.00
R8418:Garnl3	UTSW	2	32,942,158 (GRCm39)	missense	possibly damaging	0.73
R8679:Garnl3	UTSW	2	32,916,106 (GRCm39)	missense	probably damaging	1.00
R8940:Garnl3	UTSW	2	32,895,241 (GRCm39)	critical splice acceptor site	probably null
R9081:Garnl3	UTSW	2	32,896,920 (GRCm39)	missense	possibly damaging	0.90
R9183:Garnl3	UTSW	2	32,895,080 (GRCm39)	missense	probably damaging	1.00
R9213:Garnl3	UTSW	2	32,895,080 (GRCm39)	missense	probably damaging	1.00
R9219:Garnl3	UTSW	2	32,975,898 (GRCm39)	missense	probably damaging	1.00
R9453:Garnl3	UTSW	2	32,893,881 (GRCm39)	missense	probably damaging	1.00
X0022:Garnl3	UTSW	2	32,912,680 (GRCm39)	missense	probably damaging	1.00
X0023:Garnl3	UTSW	2	32,916,161 (GRCm39)	missense	probably damaging	1.00
X0024:Garnl3	UTSW	2	32,895,191 (GRCm39)	missense	probably damaging	0.98

Predicted Primers

PCR Primer
(F):5'- GGATAATCCTCAGGCTCTCCAG -3'
(R):5'- AAGGTCTGGTTCACCTGTCTG -3'

Sequencing Primer
(F):5'- ATAATCCTCAGGCTCTCCAGTTTCTG -3'
(R):5'- GTCTGGTTCACCTGTCTGTTTGC -3'

Posted On

2014-06-23