Incidental Mutation 'R1568:Spag6'
ID 175394
Institutional Source Beutler Lab
Gene Symbol Spag6
Ensembl Gene ENSMUSG00000037708
Gene Name sperm associated antigen 6
Synonyms BC061194, Spag6l
MMRRC Submission 039607-MU
Accession Numbers
Essential gene? Probably non essential (E-score: 0.063) question?
Stock # R1568 (G1)
Quality Score 225
Status Not validated
Chromosome 2
Chromosomal Location 18698808-18754561 bp(+) (GRCm39)
Type of Mutation missense
DNA Base Change (assembly) A to G at 18737925 bp (GRCm39)
Zygosity Heterozygous
Amino Acid Change Aspartic acid to Glycine at position 265 (D265G)
Ref Sequence ENSEMBL: ENSMUSP00000092751 (fasta)
Gene Model predicted gene model for transcript(s): [ENSMUST00000095132] [ENSMUST00000173763]
AlphaFold Q3V0U9
Predicted Effect probably benign
Transcript: ENSMUST00000095132
AA Change: D265G

PolyPhen 2 Score 0.000 (Sensitivity: 1.00; Specificity: 0.00)
SMART Domains Protein: ENSMUSP00000092751
Gene: ENSMUSG00000037708
AA Change: D265G

DomainStartEndE-ValueType
ARM 30 70 2.26e-3 SMART
ARM 114 154 1.67e-6 SMART
ARM 156 196 4.28e-4 SMART
ARM 198 238 5.43e-6 SMART
ARM 240 280 4.6e0 SMART
ARM 282 322 3.09e1 SMART
ARM 323 365 3.93e-3 SMART
Blast:ARM 367 409 7e-17 BLAST
Predicted Effect probably benign
Transcript: ENSMUST00000173763
SMART Domains Protein: ENSMUSP00000133383
Gene: ENSMUSG00000037708

DomainStartEndE-ValueType
ARM 8 48 2.26e-3 SMART
Blast:ARM 50 90 2e-14 BLAST
ARM 92 132 1.67e-6 SMART
ARM 134 166 5.76e1 SMART
Coding Region Coverage
  • 1x: 99.1%
  • 3x: 98.2%
  • 10x: 95.8%
  • 20x: 90.9%
Validation Efficiency
Allele List at MGI
Other mutations in this stock
Total: 61 list
GeneRefVarChr/LocMutationPredicted EffectZygosity
Adam18 T G 8: 25,137,799 (GRCm39) probably null Het
Adgb A T 10: 10,318,409 (GRCm39) Y138* probably null Het
Adra1d T C 2: 131,388,092 (GRCm39) R488G possibly damaging Het
Ahnak G A 19: 8,979,739 (GRCm39) G341E probably damaging Het
Ankmy1 T C 1: 92,808,838 (GRCm39) D690G probably damaging Het
Arhgef38 C T 3: 132,838,225 (GRCm39) E21K probably damaging Het
Atp8b2 T C 3: 89,857,155 (GRCm39) M402V probably damaging Het
Atp8b4 G T 2: 126,167,314 (GRCm39) H1062N probably benign Het
Bdnf A G 2: 109,554,139 (GRCm39) H131R probably damaging Het
Cblb C T 16: 51,956,192 (GRCm39) T265M probably damaging Het
Cenpe T A 3: 134,945,519 (GRCm39) M1011K probably benign Het
Clca3a2 A T 3: 144,781,410 (GRCm39) Y711* probably null Het
Clca4a A G 3: 144,658,690 (GRCm39) Y842H probably benign Het
Clspn T A 4: 126,475,310 (GRCm39) M1021K probably benign Het
Cpne8 G T 15: 90,503,845 (GRCm39) R107S probably damaging Het
D6Ertd527e C G 6: 87,088,506 (GRCm39) T223S unknown Het
Dna2 C T 10: 62,784,966 (GRCm39) R28W probably benign Het
Dnah5 T A 15: 28,409,323 (GRCm39) N3580K probably damaging Het
Dsp T C 13: 38,359,123 (GRCm39) I298T probably damaging Het
Dync2h1 T C 9: 7,157,553 (GRCm39) K858R probably null Het
Fasn A T 11: 120,704,075 (GRCm39) V1448E possibly damaging Het
Ghdc A G 11: 100,659,331 (GRCm39) I322T probably benign Het
Gins2 T C 8: 121,308,939 (GRCm39) D105G probably damaging Het
Insr A T 8: 3,215,576 (GRCm39) D975E probably benign Het
Klrc3 T C 6: 129,616,510 (GRCm39) D169G probably benign Het
Krt76 T A 15: 101,793,443 (GRCm39) S532C unknown Het
Lamp3 A T 16: 19,492,275 (GRCm39) M323K probably damaging Het
Lgmn T C 12: 102,360,868 (GRCm39) I423M possibly damaging Het
Lpgat1 A T 1: 191,508,538 (GRCm39) T359S possibly damaging Het
Lrguk T A 6: 34,063,373 (GRCm39) I466N probably damaging Het
Magi3 A C 3: 103,996,843 (GRCm39) M234R probably benign Het
Myh14 G A 7: 44,261,122 (GRCm39) R1042* probably null Het
Nfia T G 4: 97,999,461 (GRCm39) Y378D possibly damaging Het
Npffr1 T A 10: 61,462,012 (GRCm39) S383T possibly damaging Het
Or4f57 C A 2: 111,790,585 (GRCm39) V278F probably benign Het
Or52n4 T A 7: 104,293,977 (GRCm39) I199F probably benign Het
Or5b112 C A 19: 13,319,539 (GRCm39) P139Q probably benign Het
Or9s14 T C 1: 92,535,676 (GRCm39) L39P probably damaging Het
Osr1 G A 12: 9,629,798 (GRCm39) probably null Het
Pde4b A C 4: 102,454,896 (GRCm39) R375S probably damaging Het
Pde8a A G 7: 80,942,011 (GRCm39) E150G probably damaging Het
Pkhd1l1 A T 15: 44,408,897 (GRCm39) probably null Het
Ppp3ca A G 3: 136,634,305 (GRCm39) T422A probably benign Het
Proser1 T C 3: 53,385,180 (GRCm39) V354A possibly damaging Het
Rgs20 G T 1: 5,091,050 (GRCm39) R127S probably benign Het
Sanbr T C 11: 23,539,971 (GRCm39) K48E probably damaging Het
Sec22a T C 16: 35,167,998 (GRCm39) D171G probably benign Het
Secisbp2 A G 13: 51,827,143 (GRCm39) E417G possibly damaging Het
Serpinb6b T C 13: 33,158,895 (GRCm39) L32S probably damaging Het
Sf3b1 C G 1: 55,058,554 (GRCm39) E12Q possibly damaging Het
Slc39a10 A T 1: 46,865,375 (GRCm39) S487T probably benign Het
Slc6a1 G T 6: 114,284,731 (GRCm39) G263V probably damaging Het
Spata31e2 T C 1: 26,724,950 (GRCm39) T77A probably benign Het
Sybu G T 15: 44,582,228 (GRCm39) S132* probably null Het
Virma T C 4: 11,528,776 (GRCm39) S1288P probably damaging Het
Vmn1r229 T A 17: 21,035,067 (GRCm39) V104D probably damaging Het
Vmn1r238 T C 18: 3,123,358 (GRCm39) T19A probably benign Het
Vmn2r86 C T 10: 130,289,010 (GRCm39) V164I probably benign Het
Wfdc13 G T 2: 164,528,854 (GRCm39) A64S probably damaging Het
Zfp873 C A 10: 81,896,113 (GRCm39) H318Q probably damaging Het
Zyg11a A G 4: 108,040,843 (GRCm39) probably null Het
Other mutations in Spag6
AlleleSourceChrCoordTypePredicted EffectPPH Score
IGL00505:Spag6 APN 2 18,738,995 (GRCm39) missense probably benign 0.31
IGL01352:Spag6 APN 2 18,715,284 (GRCm39) missense possibly damaging 0.77
IGL02795:Spag6 APN 2 18,737,894 (GRCm39) missense probably benign
IGL03406:Spag6 APN 2 18,747,684 (GRCm39) splice site probably benign
R0362:Spag6 UTSW 2 18,715,302 (GRCm39) missense probably damaging 0.99
R0423:Spag6 UTSW 2 18,715,404 (GRCm39) missense probably benign 0.00
R1309:Spag6 UTSW 2 18,739,027 (GRCm39) missense probably damaging 1.00
R1386:Spag6 UTSW 2 18,739,057 (GRCm39) missense possibly damaging 0.49
R1716:Spag6 UTSW 2 18,750,420 (GRCm39) splice site probably null
R1771:Spag6 UTSW 2 18,738,928 (GRCm39) missense probably benign 0.22
R1911:Spag6 UTSW 2 18,720,616 (GRCm39) nonsense probably null
R1985:Spag6 UTSW 2 18,736,930 (GRCm39) missense probably benign 0.00
R2029:Spag6 UTSW 2 18,738,916 (GRCm39) unclassified probably benign
R2131:Spag6 UTSW 2 18,737,908 (GRCm39) nonsense probably null
R3705:Spag6 UTSW 2 18,715,368 (GRCm39) missense probably damaging 0.99
R4230:Spag6 UTSW 2 18,720,449 (GRCm39) splice site probably null
R4585:Spag6 UTSW 2 18,736,958 (GRCm39) critical splice donor site probably null
R4586:Spag6 UTSW 2 18,736,958 (GRCm39) critical splice donor site probably null
R4692:Spag6 UTSW 2 18,704,054 (GRCm39) missense probably benign 0.24
R4745:Spag6 UTSW 2 18,742,107 (GRCm39) missense possibly damaging 0.78
R4890:Spag6 UTSW 2 18,747,588 (GRCm39) missense probably benign 0.00
R4914:Spag6 UTSW 2 18,750,360 (GRCm39) missense probably benign 0.00
R4918:Spag6 UTSW 2 18,750,360 (GRCm39) missense probably benign 0.00
R5086:Spag6 UTSW 2 18,747,688 (GRCm39) splice site probably benign
R5264:Spag6 UTSW 2 18,750,324 (GRCm39) missense probably benign 0.00
R5729:Spag6 UTSW 2 18,720,525 (GRCm39) missense probably benign
R5754:Spag6 UTSW 2 18,703,613 (GRCm39) unclassified probably benign
R5781:Spag6 UTSW 2 18,736,804 (GRCm39) missense probably benign
R5954:Spag6 UTSW 2 18,715,417 (GRCm39) missense probably damaging 1.00
R6246:Spag6 UTSW 2 18,703,906 (GRCm39) critical splice donor site probably null
R7607:Spag6 UTSW 2 18,736,773 (GRCm39) missense possibly damaging 0.87
R8261:Spag6 UTSW 2 18,750,301 (GRCm39) missense probably benign 0.01
R8411:Spag6 UTSW 2 18,715,394 (GRCm39) missense probably damaging 1.00
R8865:Spag6 UTSW 2 18,738,928 (GRCm39) missense probably benign 0.22
R9275:Spag6 UTSW 2 18,703,985 (GRCm39) missense probably benign 0.28
R9278:Spag6 UTSW 2 18,703,985 (GRCm39) missense probably benign 0.28
R9413:Spag6 UTSW 2 18,739,029 (GRCm39) missense probably benign
R9451:Spag6 UTSW 2 18,715,369 (GRCm39) nonsense probably null
R9660:Spag6 UTSW 2 18,704,047 (GRCm39) missense probably benign 0.37
Predicted Primers PCR Primer
(F):5'- CAACAGCTCAGAAATCTTAGCTTGTGC -3'
(R):5'- GAGGCTTGGAGTCTTCCCACAATC -3'

Sequencing Primer
(F):5'- GCTTGTGCTAAATATCTATGTTGC -3'
(R):5'- tttcccacctacagtcacatc -3'
Posted On 2014-04-24