Mutagenetix > Incidental Mutation

Incidental Mutation 'R1568:Lpgat1'

175393

Institutional Source

Beutler Lab

Gene Symbol

Lpgat1

Ensembl Gene

ENSMUSG00000026623

Gene Name

lysophosphatidylglycerol acyltransferase 1

Synonyms

MMRRC Submission

039607-MU

Accession Numbers

Essential gene?

Possibly essential (E-score: 0.607) question?

Stock #

R1568 (G1)

Quality Score

225

Status

Not validated

Chromosome

Chromosomal Location

191449946-191516367 bp(+) (GRCm39)

Type of Mutation

missense

DNA Base Change (assembly)

A to T at 191508538 bp (GRCm39)

Zygosity

Heterozygous

Amino Acid Change

Threonine to Serine at position 359 (T359S)

Ref Sequence

ENSEMBL: ENSMUSP00000106480 (fasta)

Gene Model

predicted gene model for transcript(s): [ENSMUST00000110855] [ENSMUST00000110856]

AlphaFold

Q91YX5

Predicted Effect

noncoding transcript
Transcript: ENSMUST00000082911

Predicted Effect

possibly damaging
Transcript: ENSMUST00000110855
AA Change: T320S

PolyPhen 2 Score 0.790 (Sensitivity: 0.85; Specificity: 0.93)

SMART Domains

Protein: ENSMUSP00000106479
Gene: ENSMUSG00000026623
AA Change: T320S

Domain	Start	End	E-Value	Type
transmembrane domain	20	42	N/A	INTRINSIC
transmembrane domain	54	76	N/A	INTRINSIC
PlsC	95	219	2.16e-10	SMART
transmembrane domain	339	361	N/A	INTRINSIC

Predicted Effect

possibly damaging
Transcript: ENSMUST00000110856
AA Change: T359S

PolyPhen 2 Score 0.915 (Sensitivity: 0.81; Specificity: 0.94)

SMART Domains

Protein: ENSMUSP00000106480
Gene: ENSMUSG00000026623
AA Change: T359S

Domain	Start	End	E-Value	Type
low complexity region	2	18	N/A	INTRINSIC
transmembrane domain	59	81	N/A	INTRINSIC
transmembrane domain	93	115	N/A	INTRINSIC
PlsC	134	258	2.16e-10	SMART
Pfam:Acyltransf_C	310	384	1.5e-18	PFAM

Coding Region Coverage

1x: 99.1%
3x: 98.2%
10x: 95.8%
20x: 90.9%

Validation Efficiency

MGI Phenotype

FUNCTION: [Summary is not available for the mouse gene. This summary is for the human ortholog.] This gene encodes a member of the lysophospholipid acyltransferase family. The encoded protein catalyzes the reacylation of lysophosphatidylglycerol to phosphatidylglycerol, a membrane phospholipid that is an important precursor for the synthesis of cardiolipin. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Mar 2016]

Allele List at MGI

Other mutations in this stock

Total: 61 list
Gene	Ref	Var	Chr/Loc	Mutation	Predicted Effect	Zygosity
Adam18	T	G	8: 25,137,799 (GRCm39)		probably null	Het
Adgb	A	T	10: 10,318,409 (GRCm39)	Y138*	probably null	Het
Adra1d	T	C	2: 131,388,092 (GRCm39)	R488G	possibly damaging	Het
Ahnak	G	A	19: 8,979,739 (GRCm39)	G341E	probably damaging	Het
Ankmy1	T	C	1: 92,808,838 (GRCm39)	D690G	probably damaging	Het
Arhgef38	C	T	3: 132,838,225 (GRCm39)	E21K	probably damaging	Het
Atp8b2	T	C	3: 89,857,155 (GRCm39)	M402V	probably damaging	Het
Atp8b4	G	T	2: 126,167,314 (GRCm39)	H1062N	probably benign	Het
Bdnf	A	G	2: 109,554,139 (GRCm39)	H131R	probably damaging	Het
Cblb	C	T	16: 51,956,192 (GRCm39)	T265M	probably damaging	Het
Cenpe	T	A	3: 134,945,519 (GRCm39)	M1011K	probably benign	Het
Clca3a2	A	T	3: 144,781,410 (GRCm39)	Y711*	probably null	Het
Clca4a	A	G	3: 144,658,690 (GRCm39)	Y842H	probably benign	Het
Clspn	T	A	4: 126,475,310 (GRCm39)	M1021K	probably benign	Het
Cpne8	G	T	15: 90,503,845 (GRCm39)	R107S	probably damaging	Het
D6Ertd527e	C	G	6: 87,088,506 (GRCm39)	T223S	unknown	Het
Dna2	C	T	10: 62,784,966 (GRCm39)	R28W	probably benign	Het
Dnah5	T	A	15: 28,409,323 (GRCm39)	N3580K	probably damaging	Het
Dsp	T	C	13: 38,359,123 (GRCm39)	I298T	probably damaging	Het
Dync2h1	T	C	9: 7,157,553 (GRCm39)	K858R	probably null	Het
Fasn	A	T	11: 120,704,075 (GRCm39)	V1448E	possibly damaging	Het
Ghdc	A	G	11: 100,659,331 (GRCm39)	I322T	probably benign	Het
Gins2	T	C	8: 121,308,939 (GRCm39)	D105G	probably damaging	Het
Insr	A	T	8: 3,215,576 (GRCm39)	D975E	probably benign	Het
Klrc3	T	C	6: 129,616,510 (GRCm39)	D169G	probably benign	Het
Krt76	T	A	15: 101,793,443 (GRCm39)	S532C	unknown	Het
Lamp3	A	T	16: 19,492,275 (GRCm39)	M323K	probably damaging	Het
Lgmn	T	C	12: 102,360,868 (GRCm39)	I423M	possibly damaging	Het
Lrguk	T	A	6: 34,063,373 (GRCm39)	I466N	probably damaging	Het
Magi3	A	C	3: 103,996,843 (GRCm39)	M234R	probably benign	Het
Myh14	G	A	7: 44,261,122 (GRCm39)	R1042*	probably null	Het
Nfia	T	G	4: 97,999,461 (GRCm39)	Y378D	possibly damaging	Het
Npffr1	T	A	10: 61,462,012 (GRCm39)	S383T	possibly damaging	Het
Or4f57	C	A	2: 111,790,585 (GRCm39)	V278F	probably benign	Het
Or52n4	T	A	7: 104,293,977 (GRCm39)	I199F	probably benign	Het
Or5b112	C	A	19: 13,319,539 (GRCm39)	P139Q	probably benign	Het
Or9s14	T	C	1: 92,535,676 (GRCm39)	L39P	probably damaging	Het
Osr1	G	A	12: 9,629,798 (GRCm39)		probably null	Het
Pde4b	A	C	4: 102,454,896 (GRCm39)	R375S	probably damaging	Het
Pde8a	A	G	7: 80,942,011 (GRCm39)	E150G	probably damaging	Het
Pkhd1l1	A	T	15: 44,408,897 (GRCm39)		probably null	Het
Ppp3ca	A	G	3: 136,634,305 (GRCm39)	T422A	probably benign	Het
Proser1	T	C	3: 53,385,180 (GRCm39)	V354A	possibly damaging	Het
Rgs20	G	T	1: 5,091,050 (GRCm39)	R127S	probably benign	Het
Sanbr	T	C	11: 23,539,971 (GRCm39)	K48E	probably damaging	Het
Sec22a	T	C	16: 35,167,998 (GRCm39)	D171G	probably benign	Het
Secisbp2	A	G	13: 51,827,143 (GRCm39)	E417G	possibly damaging	Het
Serpinb6b	T	C	13: 33,158,895 (GRCm39)	L32S	probably damaging	Het
Sf3b1	C	G	1: 55,058,554 (GRCm39)	E12Q	possibly damaging	Het
Slc39a10	A	T	1: 46,865,375 (GRCm39)	S487T	probably benign	Het
Slc6a1	G	T	6: 114,284,731 (GRCm39)	G263V	probably damaging	Het
Spag6	A	G	2: 18,737,925 (GRCm39)	D265G	probably benign	Het
Spata31e2	T	C	1: 26,724,950 (GRCm39)	T77A	probably benign	Het
Sybu	G	T	15: 44,582,228 (GRCm39)	S132*	probably null	Het
Virma	T	C	4: 11,528,776 (GRCm39)	S1288P	probably damaging	Het
Vmn1r229	T	A	17: 21,035,067 (GRCm39)	V104D	probably damaging	Het
Vmn1r238	T	C	18: 3,123,358 (GRCm39)	T19A	probably benign	Het
Vmn2r86	C	T	10: 130,289,010 (GRCm39)	V164I	probably benign	Het
Wfdc13	G	T	2: 164,528,854 (GRCm39)	A64S	probably damaging	Het
Zfp873	C	A	10: 81,896,113 (GRCm39)	H318Q	probably damaging	Het
Zyg11a	A	G	4: 108,040,843 (GRCm39)		probably null	Het

Other mutations in Lpgat1

Allele	Source	Chr	Coord	Type	Predicted Effect	PPH Score
IGL00742:Lpgat1	APN	1	191,492,321 (GRCm39)	missense	probably benign	0.01
IGL01410:Lpgat1	APN	1	191,508,544 (GRCm39)	splice site	probably null
R0324:Lpgat1	UTSW	1	191,481,754 (GRCm39)	missense	probably damaging	1.00
R0386:Lpgat1	UTSW	1	191,451,460 (GRCm39)	splice site	probably benign
R1616:Lpgat1	UTSW	1	191,495,741 (GRCm39)	missense	possibly damaging	0.96
R2440:Lpgat1	UTSW	1	191,492,321 (GRCm39)	missense	probably benign	0.01
R4087:Lpgat1	UTSW	1	191,495,728 (GRCm39)	missense	possibly damaging	0.82
R4152:Lpgat1	UTSW	1	191,451,600 (GRCm39)	nonsense	probably null
R4720:Lpgat1	UTSW	1	191,495,779 (GRCm39)	missense	probably damaging	1.00
R4962:Lpgat1	UTSW	1	191,451,682 (GRCm39)	missense	probably damaging	1.00
R5828:Lpgat1	UTSW	1	191,508,494 (GRCm39)	missense	possibly damaging	0.53
R6343:Lpgat1	UTSW	1	191,508,684 (GRCm39)	splice site	probably null
R7326:Lpgat1	UTSW	1	191,451,565 (GRCm39)	missense	probably benign	0.03
R8926:Lpgat1	UTSW	1	191,492,120 (GRCm39)	missense	probably damaging	1.00
R9096:Lpgat1	UTSW	1	191,451,569 (GRCm39)	missense	possibly damaging	0.50
R9339:Lpgat1	UTSW	1	191,451,488 (GRCm39)	missense	probably benign	0.00
R9750:Lpgat1	UTSW	1	191,510,587 (GRCm39)	missense	probably benign	0.05
RF014:Lpgat1	UTSW	1	191,450,665 (GRCm39)	small insertion	probably benign
Z1176:Lpgat1	UTSW	1	191,510,587 (GRCm39)	missense	probably benign	0.28

Predicted Primers

PCR Primer
(F):5'- TCATAAAGCAGCATGGCTAAGGGAC -3'
(R):5'- TCACACAGGATGAGCAACGGTG -3'

Sequencing Primer
(F):5'- AGGGACATTTTTTGCCTAGCAC -3'
(R):5'- ccatctctatctccatcacaacc -3'

Posted On

2014-04-24